data_4DJJ
#
_model_server_result.job_id            eTZbOIi4oBWSd_rbzQZndA 
_model_server_result.datetime_utc      '2024-11-15 11:47:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4djj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":201}' 
#
_entry.id    4DJJ 
#
_exptl.entry_id    4DJJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              160.168 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PIMELIC ACID' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4DJJ 
_cell.length_a            65.024 
_cell.length_b            65.024 
_cell.length_c            160.163 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4DJJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        169 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C7 H12 O4' 
_chem_comp.formula_weight    160.168 
_chem_comp.id                PML 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PIMELIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O11 PML doub 247 n n 
C1 O12 PML sing 248 n n 
C1 C2 PML sing 249 n n 
O12 H12 PML sing 250 n n 
C2 C3 PML sing 251 n n 
C2 HC21 PML sing 252 n n 
C2 HC22 PML sing 253 n n 
C3 C4 PML sing 254 n n 
C3 HC31 PML sing 255 n n 
C3 HC32 PML sing 256 n n 
C4 C5 PML sing 257 n n 
C4 HC41 PML sing 258 n n 
C4 HC42 PML sing 259 n n 
C5 C6 PML sing 260 n n 
C5 HC51 PML sing 261 n n 
C5 HC52 PML sing 262 n n 
C6 C7 PML sing 263 n n 
C6 HC61 PML sing 264 n n 
C6 HC62 PML sing 265 n n 
C7 O71 PML doub 266 n n 
C7 O72 PML sing 267 n n 
O72 H72 PML sing 268 n n 
#
_atom_sites.entry_id                     4DJJ 
_atom_sites.fract_transf_matrix[1][1]    0.015379 
_atom_sites.fract_transf_matrix[1][2]    0.008879 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017758 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006244 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PML A 1 201 6231 PML PML . 
D 2 PML B 1 201 6232 PML PML . 
E 3 HOH A 1 301 1 HOH HOH . 
E 3 HOH A 2 302 3 HOH HOH . 
E 3 HOH A 3 303 4 HOH HOH . 
E 3 HOH A 4 304 6 HOH HOH . 
E 3 HOH A 5 305 7 HOH HOH . 
E 3 HOH A 6 306 10 HOH HOH . 
E 3 HOH A 7 307 11 HOH HOH . 
E 3 HOH A 8 308 12 HOH HOH . 
E 3 HOH A 9 309 17 HOH HOH . 
E 3 HOH A 10 310 18 HOH HOH . 
E 3 HOH A 11 311 19 HOH HOH . 
E 3 HOH A 12 312 22 HOH HOH . 
E 3 HOH A 13 313 30 HOH HOH . 
E 3 HOH A 14 314 32 HOH HOH . 
E 3 HOH A 15 315 33 HOH HOH . 
E 3 HOH A 16 316 35 HOH HOH . 
E 3 HOH A 17 317 38 HOH HOH . 
E 3 HOH A 18 318 39 HOH HOH . 
E 3 HOH A 19 319 42 HOH HOH . 
E 3 HOH A 20 320 43 HOH HOH . 
E 3 HOH A 21 321 44 HOH HOH . 
E 3 HOH A 22 322 48 HOH HOH . 
E 3 HOH A 23 323 49 HOH HOH . 
E 3 HOH A 24 324 51 HOH HOH . 
E 3 HOH A 25 325 52 HOH HOH . 
E 3 HOH A 26 326 53 HOH HOH . 
E 3 HOH A 27 327 54 HOH HOH . 
E 3 HOH A 28 328 55 HOH HOH . 
E 3 HOH A 29 329 57 HOH HOH . 
E 3 HOH A 30 330 58 HOH HOH . 
E 3 HOH A 31 331 59 HOH HOH . 
E 3 HOH A 32 332 60 HOH HOH . 
E 3 HOH A 33 333 64 HOH HOH . 
E 3 HOH A 34 334 65 HOH HOH . 
E 3 HOH A 35 335 66 HOH HOH . 
E 3 HOH A 36 336 67 HOH HOH . 
E 3 HOH A 37 337 68 HOH HOH . 
E 3 HOH A 38 338 70 HOH HOH . 
E 3 HOH A 39 339 79 HOH HOH . 
E 3 HOH A 40 340 77 HOH HOH . 
E 3 HOH A 41 341 1 HOH HOH . 
E 3 HOH A 42 342 2 HOH HOH . 
E 3 HOH A 43 343 7 HOH HOH . 
E 3 HOH A 44 344 8 HOH HOH . 
E 3 HOH A 45 345 12 HOH HOH . 
E 3 HOH A 46 346 16 HOH HOH . 
E 3 HOH A 47 347 19 HOH HOH . 
E 3 HOH A 48 348 21 HOH HOH . 
E 3 HOH A 49 349 24 HOH HOH . 
E 3 HOH A 50 350 27 HOH HOH . 
E 3 HOH A 51 351 34 HOH HOH . 
E 3 HOH A 52 352 35 HOH HOH . 
E 3 HOH A 53 353 36 HOH HOH . 
E 3 HOH A 54 354 38 HOH HOH . 
E 3 HOH A 55 355 42 HOH HOH . 
E 3 HOH A 56 356 44 HOH HOH . 
E 3 HOH A 57 357 45 HOH HOH . 
E 3 HOH A 58 358 49 HOH HOH . 
E 3 HOH A 59 359 50 HOH HOH . 
E 3 HOH A 60 360 56 HOH HOH . 
E 3 HOH A 61 361 66 HOH HOH . 
E 3 HOH A 62 362 73 HOH HOH . 
E 3 HOH A 63 363 11 HOH HOH . 
F 3 HOH B 1 301 2 HOH HOH . 
F 3 HOH B 2 302 5 HOH HOH . 
F 3 HOH B 3 303 8 HOH HOH . 
F 3 HOH B 4 304 9 HOH HOH . 
F 3 HOH B 5 305 13 HOH HOH . 
F 3 HOH B 6 306 15 HOH HOH . 
F 3 HOH B 7 307 16 HOH HOH . 
F 3 HOH B 8 308 20 HOH HOH . 
F 3 HOH B 9 309 21 HOH HOH . 
F 3 HOH B 10 310 23 HOH HOH . 
F 3 HOH B 11 311 24 HOH HOH . 
F 3 HOH B 12 312 25 HOH HOH . 
F 3 HOH B 13 313 26 HOH HOH . 
F 3 HOH B 14 314 27 HOH HOH . 
F 3 HOH B 15 315 29 HOH HOH . 
F 3 HOH B 16 316 34 HOH HOH . 
F 3 HOH B 17 317 37 HOH HOH . 
F 3 HOH B 18 318 41 HOH HOH . 
F 3 HOH B 19 319 45 HOH HOH . 
F 3 HOH B 20 320 46 HOH HOH . 
F 3 HOH B 21 321 56 HOH HOH . 
F 3 HOH B 22 322 61 HOH HOH . 
F 3 HOH B 23 323 62 HOH HOH . 
F 3 HOH B 24 324 63 HOH HOH . 
F 3 HOH B 25 325 75 HOH HOH . 
F 3 HOH B 26 326 76 HOH HOH . 
F 3 HOH B 27 327 3 HOH HOH . 
F 3 HOH B 28 328 9 HOH HOH . 
F 3 HOH B 29 329 10 HOH HOH . 
F 3 HOH B 30 330 17 HOH HOH . 
F 3 HOH B 31 331 18 HOH HOH . 
F 3 HOH B 32 332 20 HOH HOH . 
F 3 HOH B 33 333 23 HOH HOH . 
F 3 HOH B 34 334 25 HOH HOH . 
F 3 HOH B 35 335 26 HOH HOH . 
F 3 HOH B 36 336 28 HOH HOH . 
F 3 HOH B 37 337 29 HOH HOH . 
F 3 HOH B 38 338 30 HOH HOH . 
F 3 HOH B 39 339 37 HOH HOH . 
F 3 HOH B 40 340 39 HOH HOH . 
F 3 HOH B 41 341 41 HOH HOH . 
F 3 HOH B 42 342 43 HOH HOH . 
F 3 HOH B 43 343 57 HOH HOH . 
F 3 HOH B 44 344 59 HOH HOH . 
F 3 HOH B 45 345 61 HOH HOH . 
F 3 HOH B 46 346 62 HOH HOH . 
F 3 HOH B 47 347 69 HOH HOH . 
F 3 HOH B 48 348 72 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PML . . . D 2 -19.516 5.504 -17.371 0.8 46.77 ? C1 PML 201 B 1 
HETATM 2 O O11 PML . . . D 2 -20.011 4.696 -18.116 0.8 48.24 ? O11 PML 201 B 1 
HETATM 3 O O12 PML . . . D 2 -20.268 6.602 -17.015 0.8 47.34 ? O12 PML 201 B 1 
HETATM 4 C C2 PML . . . D 2 -18.19 5.229 -16.689 0.8 45.95 ? C2 PML 201 B 1 
HETATM 5 C C3 PML . . . D 2 -17.048 4.523 -17.337 0.8 44.9 ? C3 PML 201 B 1 
HETATM 6 C C4 PML . . . D 2 -15.769 4.045 -16.829 0.8 44.66 ? C4 PML 201 B 1 
HETATM 7 C C5 PML . . . D 2 -15.807 3.061 -15.726 0.8 44.56 ? C5 PML 201 B 1 
HETATM 8 C C6 PML . . . D 2 -16.344 2.582 -14.347 0.8 45.29 ? C6 PML 201 B 1 
HETATM 9 C C7 PML . . . D 2 -15.948 2.624 -12.922 0.8 45.64 ? C7 PML 201 B 1 
HETATM 10 O O71 PML . . . D 2 -16.647 2.117 -12.085 0.8 46.75 ? O71 PML 201 B 1 
HETATM 11 O O72 PML . . . D 2 -14.88 3.541 -12.566 0.8 46.09 ? O72 PML 201 B 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           306 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           11 
#