data_4DJO # _model_server_result.job_id 6ON8-nOTkwb1TJlHYF33kA _model_server_result.datetime_utc '2024-11-08 06:13:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4djo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":103}' # _entry.id 4DJO # _exptl.entry_id 4DJO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 59.044 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4DJO _cell.length_a 50.732 _cell.length_b 57.763 _cell.length_c 61.736 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4DJO _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C2 H3 O2 -1' _chem_comp.formula_weight 59.044 _chem_comp.id ACT _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O ACT doub 1 n n C OXT ACT sing 2 n n C CH3 ACT sing 3 n n CH3 H1 ACT sing 4 n n CH3 H2 ACT sing 5 n n CH3 H3 ACT sing 6 n n # _atom_sites.entry_id 4DJO _atom_sites.fract_transf_matrix[1][1] 0.019711 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017312 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016198 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MK5 A 1 101 200 MK5 MK5 . D 3 GOL A 1 102 1 GOL GOL . E 4 ACT A 1 103 1 ACT ACT . F 5 PO4 B 1 101 1 PO4 PO4 . G 5 PO4 B 1 102 2 PO4 PO4 . H 6 HOH A 1 201 2 HOH HOH . H 6 HOH A 2 202 3 HOH HOH . H 6 HOH A 3 203 4 HOH HOH . H 6 HOH A 4 204 5 HOH HOH . H 6 HOH A 5 205 6 HOH HOH . H 6 HOH A 6 206 8 HOH HOH . H 6 HOH A 7 207 9 HOH HOH . H 6 HOH A 8 208 10 HOH HOH . H 6 HOH A 9 209 11 HOH HOH . H 6 HOH A 10 210 12 HOH HOH . H 6 HOH A 11 211 13 HOH HOH . H 6 HOH A 12 212 15 HOH HOH . H 6 HOH A 13 213 18 HOH HOH . H 6 HOH A 14 214 21 HOH HOH . H 6 HOH A 15 215 22 HOH HOH . H 6 HOH A 16 216 23 HOH HOH . H 6 HOH A 17 217 29 HOH HOH . H 6 HOH A 18 218 33 HOH HOH . H 6 HOH A 19 219 34 HOH HOH . H 6 HOH A 20 220 35 HOH HOH . H 6 HOH A 21 221 36 HOH HOH . H 6 HOH A 22 222 38 HOH HOH . H 6 HOH A 23 223 39 HOH HOH . H 6 HOH A 24 224 40 HOH HOH . H 6 HOH A 25 225 42 HOH HOH . H 6 HOH A 26 226 44 HOH HOH . H 6 HOH A 27 227 47 HOH HOH . H 6 HOH A 28 228 50 HOH HOH . H 6 HOH A 29 229 51 HOH HOH . H 6 HOH A 30 230 56 HOH HOH . H 6 HOH A 31 231 59 HOH HOH . H 6 HOH A 32 232 60 HOH HOH . H 6 HOH A 33 233 62 HOH HOH . H 6 HOH A 34 234 64 HOH HOH . H 6 HOH A 35 235 67 HOH HOH . H 6 HOH A 36 236 70 HOH HOH . H 6 HOH A 37 237 71 HOH HOH . H 6 HOH A 38 238 78 HOH HOH . H 6 HOH A 39 239 79 HOH HOH . H 6 HOH A 40 240 84 HOH HOH . H 6 HOH A 41 241 85 HOH HOH . H 6 HOH A 42 242 87 HOH HOH . H 6 HOH A 43 243 88 HOH HOH . H 6 HOH A 44 244 89 HOH HOH . H 6 HOH A 45 245 91 HOH HOH . H 6 HOH A 46 246 92 HOH HOH . H 6 HOH A 47 247 97 HOH HOH . H 6 HOH A 48 248 98 HOH HOH . H 6 HOH A 49 249 112 HOH HOH . H 6 HOH A 50 250 118 HOH HOH . H 6 HOH A 51 251 119 HOH HOH . H 6 HOH A 52 252 120 HOH HOH . H 6 HOH A 53 253 121 HOH HOH . H 6 HOH A 54 254 122 HOH HOH . H 6 HOH A 55 255 123 HOH HOH . H 6 HOH A 56 256 124 HOH HOH . H 6 HOH A 57 257 125 HOH HOH . H 6 HOH A 58 258 135 HOH HOH . H 6 HOH A 59 259 136 HOH HOH . H 6 HOH A 60 260 137 HOH HOH . H 6 HOH A 61 261 138 HOH HOH . H 6 HOH A 62 262 140 HOH HOH . H 6 HOH A 63 263 142 HOH HOH . H 6 HOH A 64 264 146 HOH HOH . H 6 HOH A 65 265 154 HOH HOH . H 6 HOH A 66 266 157 HOH HOH . H 6 HOH A 67 267 158 HOH HOH . H 6 HOH A 68 268 159 HOH HOH . H 6 HOH A 69 269 160 HOH HOH . H 6 HOH A 70 270 161 HOH HOH . H 6 HOH A 71 271 162 HOH HOH . H 6 HOH A 72 272 95 HOH HOH . H 6 HOH A 73 273 104 HOH HOH . H 6 HOH A 74 274 133 HOH HOH . H 6 HOH A 75 275 152 HOH HOH . H 6 HOH A 76 276 153 HOH HOH . I 6 HOH B 1 201 1 HOH HOH . I 6 HOH B 2 202 7 HOH HOH . I 6 HOH B 3 203 14 HOH HOH . I 6 HOH B 4 204 16 HOH HOH . I 6 HOH B 5 205 17 HOH HOH . I 6 HOH B 6 206 19 HOH HOH . I 6 HOH B 7 207 20 HOH HOH . I 6 HOH B 8 208 24 HOH HOH . I 6 HOH B 9 209 25 HOH HOH . I 6 HOH B 10 210 26 HOH HOH . I 6 HOH B 11 211 27 HOH HOH . I 6 HOH B 12 212 28 HOH HOH . I 6 HOH B 13 213 30 HOH HOH . I 6 HOH B 14 214 31 HOH HOH . I 6 HOH B 15 215 32 HOH HOH . I 6 HOH B 16 216 37 HOH HOH . I 6 HOH B 17 217 41 HOH HOH . I 6 HOH B 18 218 43 HOH HOH . I 6 HOH B 19 219 45 HOH HOH . I 6 HOH B 20 220 46 HOH HOH . I 6 HOH B 21 221 48 HOH HOH . I 6 HOH B 22 222 49 HOH HOH . I 6 HOH B 23 223 52 HOH HOH . I 6 HOH B 24 224 53 HOH HOH . I 6 HOH B 25 225 54 HOH HOH . I 6 HOH B 26 226 55 HOH HOH . I 6 HOH B 27 227 57 HOH HOH . I 6 HOH B 28 228 58 HOH HOH . I 6 HOH B 29 229 61 HOH HOH . I 6 HOH B 30 230 63 HOH HOH . I 6 HOH B 31 231 65 HOH HOH . I 6 HOH B 32 232 66 HOH HOH . I 6 HOH B 33 233 68 HOH HOH . I 6 HOH B 34 234 69 HOH HOH . I 6 HOH B 35 235 72 HOH HOH . I 6 HOH B 36 236 73 HOH HOH . I 6 HOH B 37 237 74 HOH HOH . I 6 HOH B 38 238 75 HOH HOH . I 6 HOH B 39 239 76 HOH HOH . I 6 HOH B 40 240 77 HOH HOH . I 6 HOH B 41 241 80 HOH HOH . I 6 HOH B 42 242 81 HOH HOH . I 6 HOH B 43 243 82 HOH HOH . I 6 HOH B 44 244 83 HOH HOH . I 6 HOH B 45 245 86 HOH HOH . I 6 HOH B 46 246 90 HOH HOH . I 6 HOH B 47 247 93 HOH HOH . I 6 HOH B 48 248 94 HOH HOH . I 6 HOH B 49 249 96 HOH HOH . I 6 HOH B 50 250 99 HOH HOH . I 6 HOH B 51 251 100 HOH HOH . I 6 HOH B 52 252 101 HOH HOH . I 6 HOH B 53 253 102 HOH HOH . I 6 HOH B 54 254 103 HOH HOH . I 6 HOH B 55 255 105 HOH HOH . I 6 HOH B 56 256 106 HOH HOH . I 6 HOH B 57 257 107 HOH HOH . I 6 HOH B 58 258 108 HOH HOH . I 6 HOH B 59 259 109 HOH HOH . I 6 HOH B 60 260 110 HOH HOH . I 6 HOH B 61 261 111 HOH HOH . I 6 HOH B 62 262 113 HOH HOH . I 6 HOH B 63 263 114 HOH HOH . I 6 HOH B 64 264 115 HOH HOH . I 6 HOH B 65 265 116 HOH HOH . I 6 HOH B 66 266 117 HOH HOH . I 6 HOH B 67 267 126 HOH HOH . I 6 HOH B 68 268 127 HOH HOH . I 6 HOH B 69 269 128 HOH HOH . I 6 HOH B 70 270 129 HOH HOH . I 6 HOH B 71 271 130 HOH HOH . I 6 HOH B 72 272 131 HOH HOH . I 6 HOH B 73 273 132 HOH HOH . I 6 HOH B 74 274 134 HOH HOH . I 6 HOH B 75 275 139 HOH HOH . I 6 HOH B 76 276 141 HOH HOH . I 6 HOH B 77 277 143 HOH HOH . I 6 HOH B 78 278 144 HOH HOH . I 6 HOH B 79 279 145 HOH HOH . I 6 HOH B 80 280 147 HOH HOH . I 6 HOH B 81 281 148 HOH HOH . I 6 HOH B 82 282 149 HOH HOH . I 6 HOH B 83 283 150 HOH HOH . I 6 HOH B 84 284 151 HOH HOH . I 6 HOH B 85 285 155 HOH HOH . I 6 HOH B 86 286 156 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C ACT . . . E 4 34.887 38.063 21.942 1 45.66 ? C ACT 103 A 1 HETATM 2 O O ACT . . . E 4 35.357 38.704 20.98 1 46.77 ? O ACT 103 A 1 HETATM 3 O OXT ACT . . . E 4 34.416 36.952 21.645 1 44.77 ? OXT ACT 103 A 1 HETATM 4 C CH3 ACT . . . E 4 34.901 38.585 23.347 1 45.92 ? CH3 ACT 103 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 239 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #