data_4DJR # _model_server_result.job_id hMFOJuBsvxvtU9A07xu9XQ _model_server_result.datetime_utc '2024-11-08 03:40:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4djr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":101}' # _entry.id 4DJR # _exptl.entry_id 4DJR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 588.739 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(2S)-5-oxopyrrolidin-2-yl]methyl [(2S,3R)-4-{(1,3-benzothiazol-6-ylsulfonyl)[(2S)-2-methylbutyl]amino}-3-hydroxy-1-phenylbutan-2-yl]carbamate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4DJR _cell.length_a 50.728 _cell.length_b 57.85 _cell.length_c 61.692 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4DJR _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C28 H36 N4 O6 S2' _chem_comp.formula_weight 588.739 _chem_comp.id 0KJ _chem_comp.mon_nstd_flag . _chem_comp.name '[(2S)-5-oxopyrrolidin-2-yl]methyl [(2S,3R)-4-{(1,3-benzothiazol-6-ylsulfonyl)[(2S)-2-methylbutyl]amino}-3-hydroxy-1-phenylbutan-2-yl]carbamate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C25 C24 0KJ sing 1 n n C25 C26 0KJ sing 2 n n C24 N29 0KJ sing 3 n n C24 C22 0KJ sing 4 n n C35 C34 0KJ doub 5 n y C35 C36 0KJ sing 6 n y C34 C33 0KJ sing 7 n y N29 C27 0KJ sing 8 n n C26 C27 0KJ sing 9 n n C22 O23 0KJ sing 10 n n C36 C37 0KJ doub 11 n y C27 O28 0KJ doub 12 n n C33 C38 0KJ doub 13 n y O22 C21 0KJ doub 14 n n O23 C21 0KJ sing 15 n n C37 C38 0KJ sing 16 n y C21 N20 0KJ sing 17 n n C38 C32 0KJ sing 18 n n N20 C19 0KJ sing 19 n n O9 S8 0KJ doub 20 n n C32 C19 0KJ sing 21 n n C19 C17 0KJ sing 22 n n O10 S8 0KJ doub 23 n n S8 N11 0KJ sing 24 n n S8 C5 0KJ sing 25 n n C14 C13 0KJ sing 26 n n N11 C12 0KJ sing 27 n n N11 C16 0KJ sing 28 n n C17 C16 0KJ sing 29 n n C17 O18 0KJ sing 30 n n C5 C4 0KJ doub 31 n y C5 C6 0KJ sing 32 n y C4 C3 0KJ sing 33 n y C13 C12 0KJ sing 34 n n C13 C15 0KJ sing 35 n n C6 C7 0KJ doub 36 n y C18 C15 0KJ sing 37 n n C3 S1 0KJ sing 38 n y C3 C2 0KJ doub 39 n y S1 C1 0KJ sing 40 n y C7 C2 0KJ sing 41 n y C2 N1 0KJ sing 42 n y C1 N1 0KJ doub 43 n y N29 H1 0KJ sing 44 n n C24 H2 0KJ sing 45 n n C25 H3 0KJ sing 46 n n C25 H4 0KJ sing 47 n n C26 H5 0KJ sing 48 n n C26 H6 0KJ sing 49 n n C22 H7 0KJ sing 50 n n C22 H8 0KJ sing 51 n n N20 H9 0KJ sing 52 n n C19 H10 0KJ sing 53 n n C32 H11 0KJ sing 54 n n C32 H12 0KJ sing 55 n n C37 H13 0KJ sing 56 n n C36 H14 0KJ sing 57 n n C35 H15 0KJ sing 58 n n C34 H16 0KJ sing 59 n n C33 H17 0KJ sing 60 n n C17 H18 0KJ sing 61 n n O18 H19 0KJ sing 62 n n C16 H20 0KJ sing 63 n n C16 H21 0KJ sing 64 n n C12 H22 0KJ sing 65 n n C12 H23 0KJ sing 66 n n C13 H24 0KJ sing 67 n n C14 H25 0KJ sing 68 n n C14 H26 0KJ sing 69 n n C14 H27 0KJ sing 70 n n C15 H28 0KJ sing 71 n n C15 H29 0KJ sing 72 n n C18 H30 0KJ sing 73 n n C18 H31 0KJ sing 74 n n C18 H32 0KJ sing 75 n n C6 H33 0KJ sing 76 n n C7 H34 0KJ sing 77 n n C4 H35 0KJ sing 78 n n C1 H36 0KJ sing 79 n n # _atom_sites.entry_id 4DJR _atom_sites.fract_transf_matrix[1][1] 0.019713 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017286 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01621 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 0KJ A 1 101 200 0KJ M97 . D 3 PO4 A 1 102 2 PO4 PO4 . E 3 PO4 B 1 101 1 PO4 PO4 . F 3 PO4 B 1 102 3 PO4 PO4 . G 4 HOH A 1 201 1 HOH HOH . G 4 HOH A 2 202 2 HOH HOH . G 4 HOH A 3 203 3 HOH HOH . G 4 HOH A 4 204 10 HOH HOH . G 4 HOH A 5 205 11 HOH HOH . G 4 HOH A 6 206 16 HOH HOH . G 4 HOH A 7 207 17 HOH HOH . G 4 HOH A 8 208 18 HOH HOH . G 4 HOH A 9 209 20 HOH HOH . G 4 HOH A 10 210 22 HOH HOH . G 4 HOH A 11 211 23 HOH HOH . G 4 HOH A 12 212 24 HOH HOH . G 4 HOH A 13 213 27 HOH HOH . G 4 HOH A 14 214 30 HOH HOH . G 4 HOH A 15 215 32 HOH HOH . G 4 HOH A 16 216 33 HOH HOH . G 4 HOH A 17 217 34 HOH HOH . G 4 HOH A 18 218 35 HOH HOH . G 4 HOH A 19 219 37 HOH HOH . G 4 HOH A 20 220 40 HOH HOH . G 4 HOH A 21 221 41 HOH HOH . G 4 HOH A 22 222 42 HOH HOH . G 4 HOH A 23 223 43 HOH HOH . G 4 HOH A 24 224 46 HOH HOH . G 4 HOH A 25 225 48 HOH HOH . G 4 HOH A 26 226 49 HOH HOH . G 4 HOH A 27 227 50 HOH HOH . G 4 HOH A 28 228 51 HOH HOH . G 4 HOH A 29 229 52 HOH HOH . G 4 HOH A 30 230 54 HOH HOH . G 4 HOH A 31 231 55 HOH HOH . G 4 HOH A 32 232 56 HOH HOH . G 4 HOH A 33 233 57 HOH HOH . G 4 HOH A 34 234 59 HOH HOH . G 4 HOH A 35 235 60 HOH HOH . G 4 HOH A 36 236 61 HOH HOH . G 4 HOH A 37 237 64 HOH HOH . G 4 HOH A 38 238 66 HOH HOH . G 4 HOH A 39 239 72 HOH HOH . G 4 HOH A 40 240 73 HOH HOH . G 4 HOH A 41 241 74 HOH HOH . G 4 HOH A 42 242 78 HOH HOH . G 4 HOH A 43 243 80 HOH HOH . G 4 HOH A 44 244 85 HOH HOH . G 4 HOH A 45 245 87 HOH HOH . G 4 HOH A 46 246 88 HOH HOH . G 4 HOH A 47 247 89 HOH HOH . G 4 HOH A 48 248 91 HOH HOH . G 4 HOH A 49 249 92 HOH HOH . G 4 HOH A 50 250 94 HOH HOH . G 4 HOH A 51 251 95 HOH HOH . G 4 HOH A 52 252 98 HOH HOH . G 4 HOH A 53 253 103 HOH HOH . G 4 HOH A 54 254 105 HOH HOH . G 4 HOH A 55 255 110 HOH HOH . G 4 HOH A 56 256 111 HOH HOH . G 4 HOH A 57 257 113 HOH HOH . G 4 HOH A 58 258 114 HOH HOH . G 4 HOH A 59 259 116 HOH HOH . G 4 HOH A 60 260 117 HOH HOH . G 4 HOH A 61 261 119 HOH HOH . G 4 HOH A 62 262 121 HOH HOH . G 4 HOH A 63 263 122 HOH HOH . G 4 HOH A 64 264 123 HOH HOH . G 4 HOH A 65 265 124 HOH HOH . G 4 HOH A 66 266 125 HOH HOH . G 4 HOH A 67 267 126 HOH HOH . G 4 HOH A 68 268 129 HOH HOH . G 4 HOH A 69 269 130 HOH HOH . G 4 HOH A 70 270 131 HOH HOH . G 4 HOH A 71 271 132 HOH HOH . G 4 HOH A 72 272 133 HOH HOH . G 4 HOH A 73 273 140 HOH HOH . G 4 HOH A 74 274 145 HOH HOH . G 4 HOH A 75 275 146 HOH HOH . G 4 HOH A 76 276 147 HOH HOH . G 4 HOH A 77 277 148 HOH HOH . G 4 HOH A 78 278 149 HOH HOH . G 4 HOH A 79 279 150 HOH HOH . G 4 HOH A 80 280 151 HOH HOH . G 4 HOH A 81 281 152 HOH HOH . G 4 HOH A 82 282 153 HOH HOH . G 4 HOH A 83 283 154 HOH HOH . G 4 HOH A 84 284 155 HOH HOH . G 4 HOH A 85 285 156 HOH HOH . G 4 HOH A 86 286 157 HOH HOH . G 4 HOH A 87 287 158 HOH HOH . G 4 HOH A 88 288 159 HOH HOH . G 4 HOH A 89 289 160 HOH HOH . G 4 HOH A 90 290 168 HOH HOH . G 4 HOH A 91 291 172 HOH HOH . G 4 HOH A 92 292 173 HOH HOH . G 4 HOH A 93 293 174 HOH HOH . G 4 HOH A 94 294 175 HOH HOH . G 4 HOH A 95 295 176 HOH HOH . G 4 HOH A 96 296 177 HOH HOH . G 4 HOH A 97 297 142 HOH HOH . H 4 HOH B 1 201 4 HOH HOH . H 4 HOH B 2 202 5 HOH HOH . H 4 HOH B 3 203 6 HOH HOH . H 4 HOH B 4 204 7 HOH HOH . H 4 HOH B 5 205 8 HOH HOH . H 4 HOH B 6 206 9 HOH HOH . H 4 HOH B 7 207 12 HOH HOH . H 4 HOH B 8 208 13 HOH HOH . H 4 HOH B 9 209 14 HOH HOH . H 4 HOH B 10 210 15 HOH HOH . H 4 HOH B 11 211 19 HOH HOH . H 4 HOH B 12 212 21 HOH HOH . H 4 HOH B 13 213 25 HOH HOH . H 4 HOH B 14 214 26 HOH HOH . H 4 HOH B 15 215 28 HOH HOH . H 4 HOH B 16 216 29 HOH HOH . H 4 HOH B 17 217 31 HOH HOH . H 4 HOH B 18 218 36 HOH HOH . H 4 HOH B 19 219 38 HOH HOH . H 4 HOH B 20 220 39 HOH HOH . H 4 HOH B 21 221 44 HOH HOH . H 4 HOH B 22 222 45 HOH HOH . H 4 HOH B 23 223 47 HOH HOH . H 4 HOH B 24 224 53 HOH HOH . H 4 HOH B 25 225 58 HOH HOH . H 4 HOH B 26 226 62 HOH HOH . H 4 HOH B 27 227 63 HOH HOH . H 4 HOH B 28 228 65 HOH HOH . H 4 HOH B 29 229 67 HOH HOH . H 4 HOH B 30 230 68 HOH HOH . H 4 HOH B 31 231 69 HOH HOH . H 4 HOH B 32 232 70 HOH HOH . H 4 HOH B 33 233 71 HOH HOH . H 4 HOH B 34 234 75 HOH HOH . H 4 HOH B 35 235 76 HOH HOH . H 4 HOH B 36 236 77 HOH HOH . H 4 HOH B 37 237 79 HOH HOH . H 4 HOH B 38 238 81 HOH HOH . H 4 HOH B 39 239 82 HOH HOH . H 4 HOH B 40 240 83 HOH HOH . H 4 HOH B 41 241 84 HOH HOH . H 4 HOH B 42 242 86 HOH HOH . H 4 HOH B 43 243 90 HOH HOH . H 4 HOH B 44 244 93 HOH HOH . H 4 HOH B 45 245 96 HOH HOH . H 4 HOH B 46 246 97 HOH HOH . H 4 HOH B 47 247 99 HOH HOH . H 4 HOH B 48 248 100 HOH HOH . H 4 HOH B 49 249 101 HOH HOH . H 4 HOH B 50 250 102 HOH HOH . H 4 HOH B 51 251 104 HOH HOH . H 4 HOH B 52 252 106 HOH HOH . H 4 HOH B 53 253 107 HOH HOH . H 4 HOH B 54 254 108 HOH HOH . H 4 HOH B 55 255 109 HOH HOH . H 4 HOH B 56 256 112 HOH HOH . H 4 HOH B 57 257 115 HOH HOH . H 4 HOH B 58 258 118 HOH HOH . H 4 HOH B 59 259 120 HOH HOH . H 4 HOH B 60 260 127 HOH HOH . H 4 HOH B 61 261 128 HOH HOH . H 4 HOH B 62 262 134 HOH HOH . H 4 HOH B 63 263 135 HOH HOH . H 4 HOH B 64 264 136 HOH HOH . H 4 HOH B 65 265 137 HOH HOH . H 4 HOH B 66 266 138 HOH HOH . H 4 HOH B 67 267 139 HOH HOH . H 4 HOH B 68 268 141 HOH HOH . H 4 HOH B 69 269 143 HOH HOH . H 4 HOH B 70 270 144 HOH HOH . H 4 HOH B 71 271 161 HOH HOH . H 4 HOH B 72 272 162 HOH HOH . H 4 HOH B 73 273 163 HOH HOH . H 4 HOH B 74 274 164 HOH HOH . H 4 HOH B 75 275 165 HOH HOH . H 4 HOH B 76 276 166 HOH HOH . H 4 HOH B 77 277 167 HOH HOH . H 4 HOH B 78 278 169 HOH HOH . H 4 HOH B 79 279 170 HOH HOH . H 4 HOH B 80 280 171 HOH HOH . H 4 HOH B 81 281 178 HOH HOH . H 4 HOH B 82 282 179 HOH HOH . H 4 HOH B 83 283 180 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O28 0KJ . . . C 2 21.82 23.393 11.491 1 22.76 ? O28 0KJ 101 A 1 HETATM 2 C C27 0KJ . . . C 2 21.765 24.441 10.891 1 21.3 ? C27 0KJ 101 A 1 HETATM 3 N N29 0KJ . . . C 2 22.801 25.142 10.465 1 21.3 ? N29 0KJ 101 A 1 HETATM 4 C C24 0KJ . . . C 2 22.446 26.366 9.798 1 21.67 ? C24 0KJ 101 A 1 HETATM 5 C C25 0KJ . . . C 2 20.931 26.258 9.621 1 22.6 ? C25 0KJ 101 A 1 HETATM 6 C C26 0KJ . . . C 2 20.47 25.11 10.505 1 22.69 ? C26 0KJ 101 A 1 HETATM 7 C C22 0KJ . . . C 2 22.855 27.552 10.654 1 20.76 ? C22 0KJ 101 A 1 HETATM 8 O O23 0KJ . . . C 2 22.21 27.381 11.917 1 22.05 ? O23 0KJ 101 A 1 HETATM 9 C C21 0KJ . . . C 2 21.329 28.418 12.425 1 20.66 ? C21 0KJ 101 A 1 HETATM 10 O O22 0KJ . . . C 2 21.344 29.51 11.881 1 17.38 ? O22 0KJ 101 A 1 HETATM 11 N N20 0KJ . . . C 2 20.545 28.063 13.438 1 17.29 ? N20 0KJ 101 A 1 HETATM 12 C C19 0KJ . . . C 2 19.51 28.885 14.044 1 16.45 ? C19 0KJ 101 A 1 HETATM 13 C C32 0KJ . . . C 2 18.188 28.113 13.992 1 17.84 ? C32 0KJ 101 A 1 HETATM 14 C C38 0KJ . . . C 2 17.799 27.777 12.56 1 19.1 ? C38 0KJ 101 A 1 HETATM 15 C C37 0KJ . . . C 2 17.701 26.447 12.17 1 20.5 ? C37 0KJ 101 A 1 HETATM 16 C C36 0KJ . . . C 2 17.341 26.124 10.863 1 22.7 ? C36 0KJ 101 A 1 HETATM 17 C C35 0KJ . . . C 2 17.071 27.13 9.943 1 22 ? C35 0KJ 101 A 1 HETATM 18 C C34 0KJ . . . C 2 17.166 28.461 10.332 1 21.53 ? C34 0KJ 101 A 1 HETATM 19 C C33 0KJ . . . C 2 17.522 28.778 11.64 1 20.66 ? C33 0KJ 101 A 1 HETATM 20 C C17 0KJ . . . C 2 19.944 29.299 15.452 1 16.62 ? C17 0KJ 101 A 1 HETATM 21 O O18 0KJ . . . C 2 19.878 28.176 16.336 1 16.28 ? O18 0KJ 101 A 1 HETATM 22 C C16 0KJ . . . C 2 19.096 30.432 16.048 1 17.64 ? C16 0KJ 101 A 1 HETATM 23 N N11 0KJ . . . C 2 19.338 31.674 15.267 1 18.1 ? N11 0KJ 101 A 1 HETATM 24 C C12 0KJ . . . C 2 20.117 32.672 16.036 1 19.12 ? C12 0KJ 101 A 1 HETATM 25 C C13 0KJ . . . C 2 21.627 32.379 15.988 1 20.36 ? C13 0KJ 101 A 1 HETATM 26 C C14 0KJ . . . C 2 22.233 32.432 14.585 1 19.33 ? C14 0KJ 101 A 1 HETATM 27 C C15 0KJ . . . C 2 22.354 33.363 16.912 1 21.8 ? C15 0KJ 101 A 1 HETATM 28 C C18 0KJ . . . C 2 22.201 34.818 16.497 1 23.21 ? C18 0KJ 101 A 1 HETATM 29 S S8 0KJ . . . C 2 18.017 32.292 14.541 1 16.31 ? S8 0KJ 101 A 1 HETATM 30 O O10 0KJ . . . C 2 17.247 31.187 14.058 1 17 ? O10 0KJ 101 A 1 HETATM 31 O O9 0KJ . . . C 2 18.513 33.171 13.508 1 16.85 ? O9 0KJ 101 A 1 HETATM 32 C C5 0KJ . . . C 2 17.127 33.193 15.59 1 16.55 ? C5 0KJ 101 A 1 HETATM 33 C C6 0KJ . . . C 2 16.147 32.544 16.344 1 18.56 ? C6 0KJ 101 A 1 HETATM 34 C C7 0KJ . . . C 2 15.393 33.227 17.297 1 18.02 ? C7 0KJ 101 A 1 HETATM 35 C C4 0KJ . . . C 2 17.305 34.567 15.815 1 16.6 ? C4 0KJ 101 A 1 HETATM 36 C C3 0KJ . . . C 2 16.541 35.263 16.767 1 16.67 ? C3 0KJ 101 A 1 HETATM 37 S S1 0KJ . . . C 2 16.674 36.933 17.121 1 18.12 ? S1 0KJ 101 A 1 HETATM 38 C C1 0KJ . . . C 2 15.414 36.673 18.288 1 19.81 ? C1 0KJ 101 A 1 HETATM 39 N N1 0KJ . . . C 2 14.956 35.414 18.375 1 17.4 ? N1 0KJ 101 A 1 HETATM 40 C C2 0KJ . . . C 2 15.581 34.577 17.514 1 17.81 ? C2 0KJ 101 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 40 #