data_4DJR # _model_server_result.job_id o4Zy33EWFRZBSvoFluIrMQ _model_server_result.datetime_utc '2024-11-21 21:32:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4djr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":102}' # _entry.id 4DJR # _exptl.entry_id 4DJR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4DJR _cell.length_a 50.728 _cell.length_b 57.85 _cell.length_c 61.692 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4DJR _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 339 n n P O2 PO4 sing 340 n n P O3 PO4 sing 341 n n P O4 PO4 sing 342 n n # _atom_sites.entry_id 4DJR _atom_sites.fract_transf_matrix[1][1] 0.019713 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017286 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01621 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 0KJ A 1 101 200 0KJ M97 . D 3 PO4 A 1 102 2 PO4 PO4 . E 3 PO4 B 1 101 1 PO4 PO4 . F 3 PO4 B 1 102 3 PO4 PO4 . G 4 HOH A 1 201 1 HOH HOH . G 4 HOH A 2 202 2 HOH HOH . G 4 HOH A 3 203 3 HOH HOH . G 4 HOH A 4 204 10 HOH HOH . G 4 HOH A 5 205 11 HOH HOH . G 4 HOH A 6 206 16 HOH HOH . G 4 HOH A 7 207 17 HOH HOH . G 4 HOH A 8 208 18 HOH HOH . G 4 HOH A 9 209 20 HOH HOH . G 4 HOH A 10 210 22 HOH HOH . G 4 HOH A 11 211 23 HOH HOH . G 4 HOH A 12 212 24 HOH HOH . G 4 HOH A 13 213 27 HOH HOH . G 4 HOH A 14 214 30 HOH HOH . G 4 HOH A 15 215 32 HOH HOH . G 4 HOH A 16 216 33 HOH HOH . G 4 HOH A 17 217 34 HOH HOH . G 4 HOH A 18 218 35 HOH HOH . G 4 HOH A 19 219 37 HOH HOH . G 4 HOH A 20 220 40 HOH HOH . G 4 HOH A 21 221 41 HOH HOH . G 4 HOH A 22 222 42 HOH HOH . G 4 HOH A 23 223 43 HOH HOH . G 4 HOH A 24 224 46 HOH HOH . G 4 HOH A 25 225 48 HOH HOH . G 4 HOH A 26 226 49 HOH HOH . G 4 HOH A 27 227 50 HOH HOH . G 4 HOH A 28 228 51 HOH HOH . G 4 HOH A 29 229 52 HOH HOH . G 4 HOH A 30 230 54 HOH HOH . G 4 HOH A 31 231 55 HOH HOH . G 4 HOH A 32 232 56 HOH HOH . G 4 HOH A 33 233 57 HOH HOH . G 4 HOH A 34 234 59 HOH HOH . G 4 HOH A 35 235 60 HOH HOH . G 4 HOH A 36 236 61 HOH HOH . G 4 HOH A 37 237 64 HOH HOH . G 4 HOH A 38 238 66 HOH HOH . G 4 HOH A 39 239 72 HOH HOH . G 4 HOH A 40 240 73 HOH HOH . G 4 HOH A 41 241 74 HOH HOH . G 4 HOH A 42 242 78 HOH HOH . G 4 HOH A 43 243 80 HOH HOH . G 4 HOH A 44 244 85 HOH HOH . G 4 HOH A 45 245 87 HOH HOH . G 4 HOH A 46 246 88 HOH HOH . G 4 HOH A 47 247 89 HOH HOH . G 4 HOH A 48 248 91 HOH HOH . G 4 HOH A 49 249 92 HOH HOH . G 4 HOH A 50 250 94 HOH HOH . G 4 HOH A 51 251 95 HOH HOH . G 4 HOH A 52 252 98 HOH HOH . G 4 HOH A 53 253 103 HOH HOH . G 4 HOH A 54 254 105 HOH HOH . G 4 HOH A 55 255 110 HOH HOH . G 4 HOH A 56 256 111 HOH HOH . G 4 HOH A 57 257 113 HOH HOH . G 4 HOH A 58 258 114 HOH HOH . G 4 HOH A 59 259 116 HOH HOH . G 4 HOH A 60 260 117 HOH HOH . G 4 HOH A 61 261 119 HOH HOH . G 4 HOH A 62 262 121 HOH HOH . G 4 HOH A 63 263 122 HOH HOH . G 4 HOH A 64 264 123 HOH HOH . G 4 HOH A 65 265 124 HOH HOH . G 4 HOH A 66 266 125 HOH HOH . G 4 HOH A 67 267 126 HOH HOH . G 4 HOH A 68 268 129 HOH HOH . G 4 HOH A 69 269 130 HOH HOH . G 4 HOH A 70 270 131 HOH HOH . G 4 HOH A 71 271 132 HOH HOH . G 4 HOH A 72 272 133 HOH HOH . G 4 HOH A 73 273 140 HOH HOH . G 4 HOH A 74 274 145 HOH HOH . G 4 HOH A 75 275 146 HOH HOH . G 4 HOH A 76 276 147 HOH HOH . G 4 HOH A 77 277 148 HOH HOH . G 4 HOH A 78 278 149 HOH HOH . G 4 HOH A 79 279 150 HOH HOH . G 4 HOH A 80 280 151 HOH HOH . G 4 HOH A 81 281 152 HOH HOH . G 4 HOH A 82 282 153 HOH HOH . G 4 HOH A 83 283 154 HOH HOH . G 4 HOH A 84 284 155 HOH HOH . G 4 HOH A 85 285 156 HOH HOH . G 4 HOH A 86 286 157 HOH HOH . G 4 HOH A 87 287 158 HOH HOH . G 4 HOH A 88 288 159 HOH HOH . G 4 HOH A 89 289 160 HOH HOH . G 4 HOH A 90 290 168 HOH HOH . G 4 HOH A 91 291 172 HOH HOH . G 4 HOH A 92 292 173 HOH HOH . G 4 HOH A 93 293 174 HOH HOH . G 4 HOH A 94 294 175 HOH HOH . G 4 HOH A 95 295 176 HOH HOH . G 4 HOH A 96 296 177 HOH HOH . G 4 HOH A 97 297 142 HOH HOH . H 4 HOH B 1 201 4 HOH HOH . H 4 HOH B 2 202 5 HOH HOH . H 4 HOH B 3 203 6 HOH HOH . H 4 HOH B 4 204 7 HOH HOH . H 4 HOH B 5 205 8 HOH HOH . H 4 HOH B 6 206 9 HOH HOH . H 4 HOH B 7 207 12 HOH HOH . H 4 HOH B 8 208 13 HOH HOH . H 4 HOH B 9 209 14 HOH HOH . H 4 HOH B 10 210 15 HOH HOH . H 4 HOH B 11 211 19 HOH HOH . H 4 HOH B 12 212 21 HOH HOH . H 4 HOH B 13 213 25 HOH HOH . H 4 HOH B 14 214 26 HOH HOH . H 4 HOH B 15 215 28 HOH HOH . H 4 HOH B 16 216 29 HOH HOH . H 4 HOH B 17 217 31 HOH HOH . H 4 HOH B 18 218 36 HOH HOH . H 4 HOH B 19 219 38 HOH HOH . H 4 HOH B 20 220 39 HOH HOH . H 4 HOH B 21 221 44 HOH HOH . H 4 HOH B 22 222 45 HOH HOH . H 4 HOH B 23 223 47 HOH HOH . H 4 HOH B 24 224 53 HOH HOH . H 4 HOH B 25 225 58 HOH HOH . H 4 HOH B 26 226 62 HOH HOH . H 4 HOH B 27 227 63 HOH HOH . H 4 HOH B 28 228 65 HOH HOH . H 4 HOH B 29 229 67 HOH HOH . H 4 HOH B 30 230 68 HOH HOH . H 4 HOH B 31 231 69 HOH HOH . H 4 HOH B 32 232 70 HOH HOH . H 4 HOH B 33 233 71 HOH HOH . H 4 HOH B 34 234 75 HOH HOH . H 4 HOH B 35 235 76 HOH HOH . H 4 HOH B 36 236 77 HOH HOH . H 4 HOH B 37 237 79 HOH HOH . H 4 HOH B 38 238 81 HOH HOH . H 4 HOH B 39 239 82 HOH HOH . H 4 HOH B 40 240 83 HOH HOH . H 4 HOH B 41 241 84 HOH HOH . H 4 HOH B 42 242 86 HOH HOH . H 4 HOH B 43 243 90 HOH HOH . H 4 HOH B 44 244 93 HOH HOH . H 4 HOH B 45 245 96 HOH HOH . H 4 HOH B 46 246 97 HOH HOH . H 4 HOH B 47 247 99 HOH HOH . H 4 HOH B 48 248 100 HOH HOH . H 4 HOH B 49 249 101 HOH HOH . H 4 HOH B 50 250 102 HOH HOH . H 4 HOH B 51 251 104 HOH HOH . H 4 HOH B 52 252 106 HOH HOH . H 4 HOH B 53 253 107 HOH HOH . H 4 HOH B 54 254 108 HOH HOH . H 4 HOH B 55 255 109 HOH HOH . H 4 HOH B 56 256 112 HOH HOH . H 4 HOH B 57 257 115 HOH HOH . H 4 HOH B 58 258 118 HOH HOH . H 4 HOH B 59 259 120 HOH HOH . H 4 HOH B 60 260 127 HOH HOH . H 4 HOH B 61 261 128 HOH HOH . H 4 HOH B 62 262 134 HOH HOH . H 4 HOH B 63 263 135 HOH HOH . H 4 HOH B 64 264 136 HOH HOH . H 4 HOH B 65 265 137 HOH HOH . H 4 HOH B 66 266 138 HOH HOH . H 4 HOH B 67 267 139 HOH HOH . H 4 HOH B 68 268 141 HOH HOH . H 4 HOH B 69 269 143 HOH HOH . H 4 HOH B 70 270 144 HOH HOH . H 4 HOH B 71 271 161 HOH HOH . H 4 HOH B 72 272 162 HOH HOH . H 4 HOH B 73 273 163 HOH HOH . H 4 HOH B 74 274 164 HOH HOH . H 4 HOH B 75 275 165 HOH HOH . H 4 HOH B 76 276 166 HOH HOH . H 4 HOH B 77 277 167 HOH HOH . H 4 HOH B 78 278 169 HOH HOH . H 4 HOH B 79 279 170 HOH HOH . H 4 HOH B 80 280 171 HOH HOH . H 4 HOH B 81 281 178 HOH HOH . H 4 HOH B 82 282 179 HOH HOH . H 4 HOH B 83 283 180 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . D 3 42.352 37.748 13.937 1 51.78 ? P PO4 102 A 1 HETATM 2 O O1 PO4 . . . D 3 43.582 37.535 13.087 1 52.8 ? O1 PO4 102 A 1 HETATM 3 O O2 PO4 . . . D 3 41.372 38.636 13.204 1 51.53 ? O2 PO4 102 A 1 HETATM 4 O O3 PO4 . . . D 3 41.737 36.4 14.213 1 49.83 ? O3 PO4 102 A 1 HETATM 5 O O4 PO4 . . . D 3 42.777 38.384 15.24 1 51.83 ? O4 PO4 102 A 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 5 #