data_4DJT # _model_server_result.job_id Nx6RHEJOKSbuVEtmmursmw _model_server_result.datetime_utc '2024-12-26 21:56:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4djt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":303}' # _entry.id 4DJT # _exptl.entry_id 4DJT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.06 _cell.angle_gamma 90 _cell.entry_id 4DJT _cell.length_a 42.57 _cell.length_b 89.25 _cell.length_c 54.98 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4DJT _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,H 1 1 B,E,F,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 25 A THR 21 1_555 D MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc2 C O1B GDP . A GDP 301 1_555 D MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc3 D MG MG . A MG 302 1_555 H O HOH . A HOH 473 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc4 D MG MG . A MG 302 1_555 H O HOH . A HOH 474 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc5 D MG MG . A MG 302 1_555 H O HOH . A HOH 475 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc6 D MG MG . A MG 302 1_555 H O HOH . A HOH 476 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc7 B OG1 THR 25 B THR 21 1_555 F MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc8 B O LYS 203 B LYS 199 1_555 G NA NA . B NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? metalc ? metalc9 E O3B GDP . B GDP 301 1_555 F MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc10 F MG MG . B MG 302 1_555 I O HOH . B HOH 490 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? metalc ? metalc11 F MG MG . B MG 302 1_555 I O HOH . B HOH 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.835 ? metalc ? metalc12 F MG MG . B MG 302 1_555 I O HOH . B HOH 492 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc13 F MG MG . B MG 302 1_555 I O HOH . B HOH 493 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? metalc ? metalc14 G NA NA . B NA 303 1_555 I O HOH . B HOH 459 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? metalc ? metalc15 G NA NA . B NA 303 1_555 I O HOH . B HOH 517 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4DJT _atom_sites.fract_transf_matrix[1][1] 0.023491 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007661 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011204 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019131 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GDP A 1 301 221 GDP GDP . D 3 MG A 1 302 222 MG MG . E 2 GDP B 1 301 221 GDP GDP . F 3 MG B 1 302 222 MG MG . G 4 NA B 1 303 1 NA NA . H 5 HOH A 1 401 1 HOH HOH . H 5 HOH A 2 402 3 HOH HOH . H 5 HOH A 3 403 5 HOH HOH . H 5 HOH A 4 404 11 HOH HOH . H 5 HOH A 5 405 12 HOH HOH . H 5 HOH A 6 406 16 HOH HOH . H 5 HOH A 7 407 19 HOH HOH . H 5 HOH A 8 408 20 HOH HOH . H 5 HOH A 9 409 21 HOH HOH . H 5 HOH A 10 410 22 HOH HOH . H 5 HOH A 11 411 25 HOH HOH . H 5 HOH A 12 412 27 HOH HOH . H 5 HOH A 13 413 29 HOH HOH . H 5 HOH A 14 414 30 HOH HOH . H 5 HOH A 15 415 32 HOH HOH . H 5 HOH A 16 416 33 HOH HOH . H 5 HOH A 17 417 34 HOH HOH . H 5 HOH A 18 418 35 HOH HOH . H 5 HOH A 19 419 37 HOH HOH . H 5 HOH A 20 420 38 HOH HOH . H 5 HOH A 21 421 39 HOH HOH . H 5 HOH A 22 422 40 HOH HOH . H 5 HOH A 23 423 41 HOH HOH . H 5 HOH A 24 424 44 HOH HOH . H 5 HOH A 25 425 45 HOH HOH . H 5 HOH A 26 426 52 HOH HOH . H 5 HOH A 27 427 55 HOH HOH . H 5 HOH A 28 428 60 HOH HOH . H 5 HOH A 29 429 62 HOH HOH . H 5 HOH A 30 430 64 HOH HOH . H 5 HOH A 31 431 65 HOH HOH . H 5 HOH A 32 432 66 HOH HOH . H 5 HOH A 33 433 69 HOH HOH . H 5 HOH A 34 434 70 HOH HOH . H 5 HOH A 35 435 71 HOH HOH . H 5 HOH A 36 436 72 HOH HOH . H 5 HOH A 37 437 75 HOH HOH . H 5 HOH A 38 438 77 HOH HOH . H 5 HOH A 39 439 82 HOH HOH . H 5 HOH A 40 440 85 HOH HOH . H 5 HOH A 41 441 87 HOH HOH . H 5 HOH A 42 442 89 HOH HOH . H 5 HOH A 43 443 90 HOH HOH . H 5 HOH A 44 444 91 HOH HOH . H 5 HOH A 45 445 92 HOH HOH . H 5 HOH A 46 446 95 HOH HOH . H 5 HOH A 47 447 96 HOH HOH . H 5 HOH A 48 448 97 HOH HOH . H 5 HOH A 49 449 98 HOH HOH . H 5 HOH A 50 450 99 HOH HOH . H 5 HOH A 51 451 101 HOH HOH . H 5 HOH A 52 452 105 HOH HOH . H 5 HOH A 53 453 106 HOH HOH . H 5 HOH A 54 454 108 HOH HOH . H 5 HOH A 55 455 109 HOH HOH . H 5 HOH A 56 456 112 HOH HOH . H 5 HOH A 57 457 114 HOH HOH . H 5 HOH A 58 458 115 HOH HOH . H 5 HOH A 59 459 116 HOH HOH . H 5 HOH A 60 460 117 HOH HOH . H 5 HOH A 61 461 119 HOH HOH . H 5 HOH A 62 462 120 HOH HOH . H 5 HOH A 63 463 121 HOH HOH . H 5 HOH A 64 464 126 HOH HOH . H 5 HOH A 65 465 132 HOH HOH . H 5 HOH A 66 466 133 HOH HOH . H 5 HOH A 67 467 134 HOH HOH . H 5 HOH A 68 468 136 HOH HOH . H 5 HOH A 69 469 147 HOH HOH . H 5 HOH A 70 470 148 HOH HOH . H 5 HOH A 71 471 149 HOH HOH . H 5 HOH A 72 472 150 HOH HOH . H 5 HOH A 73 473 167 HOH HOH . H 5 HOH A 74 474 168 HOH HOH . H 5 HOH A 75 475 169 HOH HOH . H 5 HOH A 76 476 170 HOH HOH . H 5 HOH A 77 477 171 HOH HOH . H 5 HOH A 78 478 172 HOH HOH . H 5 HOH A 79 479 173 HOH HOH . H 5 HOH A 80 480 174 HOH HOH . H 5 HOH A 81 481 175 HOH HOH . H 5 HOH A 82 482 176 HOH HOH . H 5 HOH A 83 483 177 HOH HOH . H 5 HOH A 84 484 178 HOH HOH . H 5 HOH A 85 485 179 HOH HOH . H 5 HOH A 86 486 180 HOH HOH . H 5 HOH A 87 487 181 HOH HOH . H 5 HOH A 88 488 182 HOH HOH . H 5 HOH A 89 489 183 HOH HOH . H 5 HOH A 90 490 184 HOH HOH . H 5 HOH A 91 491 185 HOH HOH . H 5 HOH A 92 492 187 HOH HOH . H 5 HOH A 93 493 195 HOH HOH . H 5 HOH A 94 494 196 HOH HOH . H 5 HOH A 95 495 197 HOH HOH . H 5 HOH A 96 496 198 HOH HOH . H 5 HOH A 97 497 199 HOH HOH . H 5 HOH A 98 498 200 HOH HOH . H 5 HOH A 99 499 201 HOH HOH . H 5 HOH A 100 500 202 HOH HOH . H 5 HOH A 101 501 203 HOH HOH . H 5 HOH A 102 502 204 HOH HOH . H 5 HOH A 103 503 205 HOH HOH . H 5 HOH A 104 504 217 HOH HOH . H 5 HOH A 105 505 220 HOH HOH . H 5 HOH A 106 506 228 HOH HOH . H 5 HOH A 107 507 229 HOH HOH . H 5 HOH A 108 508 230 HOH HOH . H 5 HOH A 109 509 231 HOH HOH . H 5 HOH A 110 510 232 HOH HOH . H 5 HOH A 111 511 239 HOH HOH . H 5 HOH A 112 512 240 HOH HOH . H 5 HOH A 113 513 241 HOH HOH . H 5 HOH A 114 514 242 HOH HOH . H 5 HOH A 115 515 243 HOH HOH . H 5 HOH A 116 516 244 HOH HOH . H 5 HOH A 117 517 245 HOH HOH . H 5 HOH A 118 518 246 HOH HOH . H 5 HOH A 119 519 247 HOH HOH . H 5 HOH A 120 520 248 HOH HOH . H 5 HOH A 121 521 250 HOH HOH . H 5 HOH A 122 522 251 HOH HOH . H 5 HOH A 123 523 252 HOH HOH . H 5 HOH A 124 524 253 HOH HOH . H 5 HOH A 125 525 254 HOH HOH . H 5 HOH A 126 526 255 HOH HOH . H 5 HOH A 127 527 272 HOH HOH . I 5 HOH B 1 401 2 HOH HOH . I 5 HOH B 2 402 4 HOH HOH . I 5 HOH B 3 403 6 HOH HOH . I 5 HOH B 4 404 7 HOH HOH . I 5 HOH B 5 405 8 HOH HOH . I 5 HOH B 6 406 9 HOH HOH . I 5 HOH B 7 407 10 HOH HOH . I 5 HOH B 8 408 13 HOH HOH . I 5 HOH B 9 409 14 HOH HOH . I 5 HOH B 10 410 15 HOH HOH . I 5 HOH B 11 411 17 HOH HOH . I 5 HOH B 12 412 18 HOH HOH . I 5 HOH B 13 413 23 HOH HOH . I 5 HOH B 14 414 24 HOH HOH . I 5 HOH B 15 415 26 HOH HOH . I 5 HOH B 16 416 28 HOH HOH . I 5 HOH B 17 417 31 HOH HOH . I 5 HOH B 18 418 36 HOH HOH . I 5 HOH B 19 419 42 HOH HOH . I 5 HOH B 20 420 43 HOH HOH . I 5 HOH B 21 421 46 HOH HOH . I 5 HOH B 22 422 47 HOH HOH . I 5 HOH B 23 423 48 HOH HOH . I 5 HOH B 24 424 49 HOH HOH . I 5 HOH B 25 425 50 HOH HOH . I 5 HOH B 26 426 51 HOH HOH . I 5 HOH B 27 427 53 HOH HOH . I 5 HOH B 28 428 54 HOH HOH . I 5 HOH B 29 429 56 HOH HOH . I 5 HOH B 30 430 57 HOH HOH . I 5 HOH B 31 431 58 HOH HOH . I 5 HOH B 32 432 59 HOH HOH . I 5 HOH B 33 433 61 HOH HOH . I 5 HOH B 34 434 63 HOH HOH . I 5 HOH B 35 435 67 HOH HOH . I 5 HOH B 36 436 68 HOH HOH . I 5 HOH B 37 437 73 HOH HOH . I 5 HOH B 38 438 74 HOH HOH . I 5 HOH B 39 439 76 HOH HOH . I 5 HOH B 40 440 78 HOH HOH . I 5 HOH B 41 441 79 HOH HOH . I 5 HOH B 42 442 80 HOH HOH . I 5 HOH B 43 443 81 HOH HOH . I 5 HOH B 44 444 83 HOH HOH . I 5 HOH B 45 445 84 HOH HOH . I 5 HOH B 46 446 86 HOH HOH . I 5 HOH B 47 447 88 HOH HOH . I 5 HOH B 48 448 93 HOH HOH . I 5 HOH B 49 449 94 HOH HOH . I 5 HOH B 50 450 100 HOH HOH . I 5 HOH B 51 451 102 HOH HOH . I 5 HOH B 52 452 103 HOH HOH . I 5 HOH B 53 453 104 HOH HOH . I 5 HOH B 54 454 107 HOH HOH . I 5 HOH B 55 455 110 HOH HOH . I 5 HOH B 56 456 111 HOH HOH . I 5 HOH B 57 457 118 HOH HOH . I 5 HOH B 58 458 122 HOH HOH . I 5 HOH B 59 459 123 HOH HOH . I 5 HOH B 60 460 124 HOH HOH . I 5 HOH B 61 461 125 HOH HOH . I 5 HOH B 62 462 127 HOH HOH . I 5 HOH B 63 463 128 HOH HOH . I 5 HOH B 64 464 129 HOH HOH . I 5 HOH B 65 465 130 HOH HOH . I 5 HOH B 66 466 131 HOH HOH . I 5 HOH B 67 467 135 HOH HOH . I 5 HOH B 68 468 137 HOH HOH . I 5 HOH B 69 469 138 HOH HOH . I 5 HOH B 70 470 139 HOH HOH . I 5 HOH B 71 471 140 HOH HOH . I 5 HOH B 72 472 141 HOH HOH . I 5 HOH B 73 473 142 HOH HOH . I 5 HOH B 74 474 143 HOH HOH . I 5 HOH B 75 475 144 HOH HOH . I 5 HOH B 76 476 145 HOH HOH . I 5 HOH B 77 477 146 HOH HOH . I 5 HOH B 78 478 151 HOH HOH . I 5 HOH B 79 479 152 HOH HOH . I 5 HOH B 80 480 153 HOH HOH . I 5 HOH B 81 481 154 HOH HOH . I 5 HOH B 82 482 155 HOH HOH . I 5 HOH B 83 483 156 HOH HOH . I 5 HOH B 84 484 157 HOH HOH . I 5 HOH B 85 485 158 HOH HOH . I 5 HOH B 86 486 159 HOH HOH . I 5 HOH B 87 487 160 HOH HOH . I 5 HOH B 88 488 161 HOH HOH . I 5 HOH B 89 489 162 HOH HOH . I 5 HOH B 90 490 163 HOH HOH . I 5 HOH B 91 491 164 HOH HOH . I 5 HOH B 92 492 165 HOH HOH . I 5 HOH B 93 493 166 HOH HOH . I 5 HOH B 94 494 186 HOH HOH . I 5 HOH B 95 495 188 HOH HOH . I 5 HOH B 96 496 189 HOH HOH . I 5 HOH B 97 497 190 HOH HOH . I 5 HOH B 98 498 191 HOH HOH . I 5 HOH B 99 499 192 HOH HOH . I 5 HOH B 100 500 193 HOH HOH . I 5 HOH B 101 501 194 HOH HOH . I 5 HOH B 102 502 206 HOH HOH . I 5 HOH B 103 503 207 HOH HOH . I 5 HOH B 104 504 208 HOH HOH . I 5 HOH B 105 505 209 HOH HOH . I 5 HOH B 106 506 210 HOH HOH . I 5 HOH B 107 507 211 HOH HOH . I 5 HOH B 108 508 212 HOH HOH . I 5 HOH B 109 509 213 HOH HOH . I 5 HOH B 110 510 214 HOH HOH . I 5 HOH B 111 511 215 HOH HOH . I 5 HOH B 112 512 216 HOH HOH . I 5 HOH B 113 513 218 HOH HOH . I 5 HOH B 114 514 219 HOH HOH . I 5 HOH B 115 515 221 HOH HOH . I 5 HOH B 116 516 222 HOH HOH . I 5 HOH B 117 517 223 HOH HOH . I 5 HOH B 118 518 224 HOH HOH . I 5 HOH B 119 519 225 HOH HOH . I 5 HOH B 120 520 226 HOH HOH . I 5 HOH B 121 521 227 HOH HOH . I 5 HOH B 122 522 233 HOH HOH . I 5 HOH B 123 523 234 HOH HOH . I 5 HOH B 124 524 235 HOH HOH . I 5 HOH B 125 525 236 HOH HOH . I 5 HOH B 126 526 237 HOH HOH . I 5 HOH B 127 527 238 HOH HOH . I 5 HOH B 128 528 249 HOH HOH . I 5 HOH B 129 529 256 HOH HOH . I 5 HOH B 130 530 257 HOH HOH . I 5 HOH B 131 531 258 HOH HOH . I 5 HOH B 132 532 259 HOH HOH . I 5 HOH B 133 533 260 HOH HOH . I 5 HOH B 134 534 261 HOH HOH . I 5 HOH B 135 535 262 HOH HOH . I 5 HOH B 136 536 263 HOH HOH . I 5 HOH B 137 537 264 HOH HOH . I 5 HOH B 138 538 265 HOH HOH . I 5 HOH B 139 539 266 HOH HOH . I 5 HOH B 140 540 267 HOH HOH . I 5 HOH B 141 541 268 HOH HOH . I 5 HOH B 142 542 269 HOH HOH . I 5 HOH B 143 543 270 HOH HOH . I 5 HOH B 144 544 271 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 4 _atom_site.Cartn_x 22.58 _atom_site.Cartn_y -20.213 _atom_site.Cartn_z -26 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 26.79 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 303 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 1 #