data_4DK4
#
_model_server_result.job_id            dUzHHZzKtCC2DUXWVvFqqg 
_model_server_result.datetime_utc      '2024-11-30 19:51:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4dk4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":302}' 
#
_entry.id    4DK4 
#
_exptl.entry_id    4DK4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              40.078 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CALCIUM ION' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4DK4 
_cell.length_a            58.84 
_cell.length_b            83.19 
_cell.length_c            91.18 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4DK4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
? 3 H N N 
? 3 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE2 GLU 51 A GLU 48 1_555 D CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? 
metalc ? metalc2 A OE1 GLU 51 A GLU 48 1_555 E CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? 
metalc ? metalc3 A OE2 GLU 54 A GLU 51 1_555 D CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? 
metalc ? metalc4 A OE1 GLU 54 A GLU 51 1_555 E CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? 
metalc ? metalc5 A OE1 GLU 54 A GLU 51 1_555 F NA NA . A NA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.557 ? 
metalc ? metalc6 A OE1 GLU 79 A GLU 76 1_555 E CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? 
metalc ? metalc7 A OE2 GLU 79 A GLU 76 1_555 F NA NA . A NA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? 
metalc ? metalc8 A OD2 ASP 82 A ASP 79 1_555 E CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? 
metalc ? metalc9 C O2A DUN . A DUN 301 1_555 D CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? 
metalc ? metalc10 C O3B DUN . A DUN 301 1_555 D CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? 
metalc ? metalc11 C O3B DUN . A DUN 301 1_555 E CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? 
metalc ? metalc12 D CA CA . A CA 302 1_555 K O HOH . A HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? 
metalc ? metalc13 D CA CA . A CA 302 1_555 K O HOH . A HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? 
metalc ? metalc14 E CA CA . A CA 303 1_555 K O HOH . A HOH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? 
metalc ? metalc15 F NA NA . A NA 304 1_555 K O HOH . A HOH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.559 ? 
metalc ? metalc16 F NA NA . A NA 304 1_555 K O HOH . A HOH 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? 
metalc ? metalc17 F NA NA . A NA 304 1_555 K O HOH . A HOH 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.596 ? 
metalc ? metalc18 F NA NA . A NA 304 1_555 K O HOH . A HOH 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? 
metalc ? metalc19 K O HOH . A HOH 404 1_555 H CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? 
metalc ? metalc20 B OE2 GLU 51 B GLU 48 1_555 H CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? 
metalc ? metalc21 B OE1 GLU 51 B GLU 48 1_555 I CA CA . B CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? 
metalc ? metalc22 B OE2 GLU 54 B GLU 51 1_555 H CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? 
metalc ? metalc23 B OE1 GLU 54 B GLU 51 1_555 I CA CA . B CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? 
metalc ? metalc24 B OE1 GLU 54 B GLU 51 1_555 J NA NA . B NA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.57 ? 
metalc ? metalc25 B OE1 GLU 79 B GLU 76 1_555 I CA CA . B CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? 
metalc ? metalc26 B OE2 GLU 79 B GLU 76 1_555 J NA NA . B NA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? 
metalc ? metalc27 B OD2 ASP 82 B ASP 79 1_555 I CA CA . B CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? 
metalc ? metalc28 G O1A DUN . B DUN 301 1_555 H CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? 
metalc ? metalc29 G O3B DUN . B DUN 301 1_555 H CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? 
metalc ? metalc30 G O3B DUN . B DUN 301 1_555 I CA CA . B CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? 
metalc ? metalc31 H CA CA . B CA 302 1_555 L O HOH . B HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? 
metalc ? metalc32 I CA CA . B CA 303 1_555 L O HOH . B HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? 
metalc ? metalc33 J NA NA . B NA 304 1_555 L O HOH . B HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.595 ? 
metalc ? metalc34 J NA NA . B NA 304 1_555 L O HOH . B HOH 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.622 ? 
metalc ? metalc35 J NA NA . B NA 304 1_555 L O HOH . B HOH 490 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? 
#
_chem_comp.formula           'Ca 2' 
_chem_comp.formula_weight    40.078 
_chem_comp.id                CA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CALCIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4DK4 
_atom_sites.fract_transf_matrix[1][1]    0.016995 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012021 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010967 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 DUN A 1 301 1 DUN DUN . 
D 3 CA A 1 302 1 CA CA . 
E 3 CA A 1 303 2 CA CA . 
F 4 NA A 1 304 3 NA NA . 
G 2 DUN B 1 301 2 DUN DUN . 
H 3 CA B 1 302 1 CA CA . 
I 3 CA B 1 303 2 CA CA . 
J 4 NA B 1 304 3 NA NA . 
K 5 HOH A 1 401 1 HOH HOH . 
K 5 HOH A 2 402 2 HOH HOH . 
K 5 HOH A 3 403 3 HOH HOH . 
K 5 HOH A 4 404 6 HOH HOH . 
K 5 HOH A 5 405 9 HOH HOH . 
K 5 HOH A 6 406 10 HOH HOH . 
K 5 HOH A 7 407 11 HOH HOH . 
K 5 HOH A 8 408 14 HOH HOH . 
K 5 HOH A 9 409 16 HOH HOH . 
K 5 HOH A 10 410 19 HOH HOH . 
K 5 HOH A 11 411 21 HOH HOH . 
K 5 HOH A 12 412 25 HOH HOH . 
K 5 HOH A 13 413 26 HOH HOH . 
K 5 HOH A 14 414 28 HOH HOH . 
K 5 HOH A 15 415 32 HOH HOH . 
K 5 HOH A 16 416 37 HOH HOH . 
K 5 HOH A 17 417 38 HOH HOH . 
K 5 HOH A 18 418 39 HOH HOH . 
K 5 HOH A 19 419 41 HOH HOH . 
K 5 HOH A 20 420 45 HOH HOH . 
K 5 HOH A 21 421 46 HOH HOH . 
K 5 HOH A 22 422 50 HOH HOH . 
K 5 HOH A 23 423 58 HOH HOH . 
K 5 HOH A 24 424 61 HOH HOH . 
K 5 HOH A 25 425 64 HOH HOH . 
K 5 HOH A 26 426 65 HOH HOH . 
K 5 HOH A 27 427 73 HOH HOH . 
K 5 HOH A 28 428 76 HOH HOH . 
K 5 HOH A 29 429 78 HOH HOH . 
K 5 HOH A 30 430 83 HOH HOH . 
K 5 HOH A 31 431 96 HOH HOH . 
K 5 HOH A 32 432 100 HOH HOH . 
K 5 HOH A 33 433 101 HOH HOH . 
K 5 HOH A 34 434 102 HOH HOH . 
K 5 HOH A 35 435 104 HOH HOH . 
K 5 HOH A 36 436 107 HOH HOH . 
K 5 HOH A 37 437 108 HOH HOH . 
K 5 HOH A 38 438 114 HOH HOH . 
K 5 HOH A 39 439 115 HOH HOH . 
K 5 HOH A 40 440 116 HOH HOH . 
K 5 HOH A 41 441 117 HOH HOH . 
K 5 HOH A 42 442 118 HOH HOH . 
K 5 HOH A 43 443 119 HOH HOH . 
K 5 HOH A 44 444 120 HOH HOH . 
K 5 HOH A 45 445 121 HOH HOH . 
K 5 HOH A 46 446 122 HOH HOH . 
K 5 HOH A 47 447 123 HOH HOH . 
K 5 HOH A 48 448 124 HOH HOH . 
K 5 HOH A 49 449 125 HOH HOH . 
K 5 HOH A 50 450 126 HOH HOH . 
K 5 HOH A 51 451 127 HOH HOH . 
K 5 HOH A 52 452 128 HOH HOH . 
K 5 HOH A 53 453 140 HOH HOH . 
K 5 HOH A 54 454 141 HOH HOH . 
L 5 HOH B 1 401 7 HOH HOH . 
L 5 HOH B 2 402 8 HOH HOH . 
L 5 HOH B 3 403 12 HOH HOH . 
L 5 HOH B 4 404 13 HOH HOH . 
L 5 HOH B 5 405 15 HOH HOH . 
L 5 HOH B 6 406 17 HOH HOH . 
L 5 HOH B 7 407 18 HOH HOH . 
L 5 HOH B 8 408 20 HOH HOH . 
L 5 HOH B 9 409 22 HOH HOH . 
L 5 HOH B 10 410 23 HOH HOH . 
L 5 HOH B 11 411 24 HOH HOH . 
L 5 HOH B 12 412 27 HOH HOH . 
L 5 HOH B 13 413 29 HOH HOH . 
L 5 HOH B 14 414 30 HOH HOH . 
L 5 HOH B 15 415 31 HOH HOH . 
L 5 HOH B 16 416 33 HOH HOH . 
L 5 HOH B 17 417 34 HOH HOH . 
L 5 HOH B 18 418 35 HOH HOH . 
L 5 HOH B 19 419 36 HOH HOH . 
L 5 HOH B 20 420 40 HOH HOH . 
L 5 HOH B 21 421 42 HOH HOH . 
L 5 HOH B 22 422 43 HOH HOH . 
L 5 HOH B 23 423 44 HOH HOH . 
L 5 HOH B 24 424 47 HOH HOH . 
L 5 HOH B 25 425 48 HOH HOH . 
L 5 HOH B 26 426 49 HOH HOH . 
L 5 HOH B 27 427 51 HOH HOH . 
L 5 HOH B 28 428 52 HOH HOH . 
L 5 HOH B 29 429 53 HOH HOH . 
L 5 HOH B 30 430 54 HOH HOH . 
L 5 HOH B 31 431 55 HOH HOH . 
L 5 HOH B 32 432 57 HOH HOH . 
L 5 HOH B 33 433 59 HOH HOH . 
L 5 HOH B 34 434 60 HOH HOH . 
L 5 HOH B 35 435 62 HOH HOH . 
L 5 HOH B 36 436 63 HOH HOH . 
L 5 HOH B 37 437 67 HOH HOH . 
L 5 HOH B 38 438 68 HOH HOH . 
L 5 HOH B 39 439 69 HOH HOH . 
L 5 HOH B 40 440 70 HOH HOH . 
L 5 HOH B 41 441 71 HOH HOH . 
L 5 HOH B 42 442 72 HOH HOH . 
L 5 HOH B 43 443 74 HOH HOH . 
L 5 HOH B 44 444 75 HOH HOH . 
L 5 HOH B 45 445 77 HOH HOH . 
L 5 HOH B 46 446 79 HOH HOH . 
L 5 HOH B 47 447 80 HOH HOH . 
L 5 HOH B 48 448 81 HOH HOH . 
L 5 HOH B 49 449 82 HOH HOH . 
L 5 HOH B 50 450 84 HOH HOH . 
L 5 HOH B 51 451 85 HOH HOH . 
L 5 HOH B 52 452 86 HOH HOH . 
L 5 HOH B 53 453 87 HOH HOH . 
L 5 HOH B 54 454 88 HOH HOH . 
L 5 HOH B 55 455 89 HOH HOH . 
L 5 HOH B 56 456 90 HOH HOH . 
L 5 HOH B 57 457 91 HOH HOH . 
L 5 HOH B 58 458 92 HOH HOH . 
L 5 HOH B 59 459 93 HOH HOH . 
L 5 HOH B 60 460 94 HOH HOH . 
L 5 HOH B 61 461 95 HOH HOH . 
L 5 HOH B 62 462 97 HOH HOH . 
L 5 HOH B 63 463 98 HOH HOH . 
L 5 HOH B 64 464 99 HOH HOH . 
L 5 HOH B 65 465 103 HOH HOH . 
L 5 HOH B 66 466 105 HOH HOH . 
L 5 HOH B 67 467 106 HOH HOH . 
L 5 HOH B 68 468 109 HOH HOH . 
L 5 HOH B 69 469 111 HOH HOH . 
L 5 HOH B 70 470 113 HOH HOH . 
L 5 HOH B 71 471 129 HOH HOH . 
L 5 HOH B 72 472 130 HOH HOH . 
L 5 HOH B 73 473 131 HOH HOH . 
L 5 HOH B 74 474 132 HOH HOH . 
L 5 HOH B 75 475 133 HOH HOH . 
L 5 HOH B 76 476 134 HOH HOH . 
L 5 HOH B 77 477 135 HOH HOH . 
L 5 HOH B 78 478 136 HOH HOH . 
L 5 HOH B 79 479 137 HOH HOH . 
L 5 HOH B 80 480 138 HOH HOH . 
L 5 HOH B 81 481 139 HOH HOH . 
L 5 HOH B 82 482 142 HOH HOH . 
L 5 HOH B 83 483 143 HOH HOH . 
L 5 HOH B 84 484 144 HOH HOH . 
L 5 HOH B 85 485 145 HOH HOH . 
L 5 HOH B 86 486 146 HOH HOH . 
L 5 HOH B 87 487 147 HOH HOH . 
L 5 HOH B 88 488 148 HOH HOH . 
L 5 HOH B 89 489 149 HOH HOH . 
L 5 HOH B 90 490 150 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CA 
_atom_site.label_atom_id         CA 
_atom_site.label_comp_id         CA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               -29.84 
_atom_site.Cartn_y               11.917 
_atom_site.Cartn_z               -22.325 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        12.01 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CA 
_atom_site.auth_comp_id          CA 
_atom_site.auth_seq_id           302 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           292 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           1 
#