data_4DK7
#
_model_server_result.job_id            mqumbAuZ9QjbcC0gIuLztw 
_model_server_result.datetime_utc      '2024-12-26 19:19:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4dk7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":502}' 
#
_entry.id    4DK7 
#
_exptl.entry_id    4DK7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              59.044 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ACETATE ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4DK7 
_cell.length_a            87.261 
_cell.length_b            87.261 
_cell.length_c            197.709 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4DK7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C HIS 3 A HIS 217 1_555 A N MSE 4 A MSE 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale2 A C MSE 4 A MSE 218 1_555 A N GLN 5 A GLN 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale3 A C LEU 12 A LEU 226 1_555 A N MSE 13 A MSE 227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale4 A C MSE 13 A MSE 227 1_555 A N ILE 14 A ILE 228 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale5 A C ILE 97 A ILE 311 1_555 A N MSE 98 A MSE 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale6 A C MSE 98 A MSE 312 1_555 A N LEU 99 A LEU 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale7 A C ALA 145 A ALA 359 1_555 A N MSE 146 A MSE 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale8 A C MSE 146 A MSE 360 1_555 A N ARG 147 A ARG 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale9 A C ARG 206 A ARG 420 1_555 A N MSE 207 A MSE 421 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale10 A C MSE 207 A MSE 421 1_555 A N LEU 208 A LEU 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale11 A C LEU 208 A LEU 422 1_555 A N MSE 209 A MSE 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale12 A C MSE 209 A MSE 423 1_555 A N LYS 210 A LYS 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale13 C C LEU 12 C LEU 226 1_555 C N MSE 13 C MSE 227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale14 C C MSE 13 C MSE 227 1_555 C N ILE 14 C ILE 228 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale15 C C ILE 97 C ILE 311 1_555 C N MSE 98 C MSE 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale16 C C MSE 98 C MSE 312 1_555 C N LEU 99 C LEU 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale17 C C ALA 145 C ALA 359 1_555 C N MSE 146 C MSE 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? 
covale ? covale18 C C MSE 146 C MSE 360 1_555 C N ARG 147 C ARG 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale19 C C ARG 206 C ARG 420 1_555 C N MSE 207 C MSE 421 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale20 C C MSE 207 C MSE 421 1_555 C N LEU 208 C LEU 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale21 C C LEU 208 C LEU 422 1_555 C N MSE 209 C MSE 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale22 C C MSE 209 C MSE 423 1_555 C N LYS 210 C LYS 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
metalc ? metalc1 A OE2 GLU 111 A GLU 325 1_555 I CA CA . A CA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.73 ? 
metalc ? metalc2 A OE1 GLU 111 A GLU 325 1_555 I CA CA . A CA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.759 ? 
metalc ? metalc3 A OD2 ASP 125 A ASP 339 1_555 J CA CA . A CA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.192 ? 
metalc ? metalc4 F O ACT . A ACT 502 1_555 I CA CA . A CA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.12 ? 
metalc ? metalc5 F OXT ACT . A ACT 502 1_555 I CA CA . A CA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.13 ? 
metalc ? metalc6 C O THR 120 C THR 334 1_555 N CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.088 ? 
metalc ? metalc7 C OD1 ASP 125 C ASP 339 1_555 N CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.199 ? 
#
_chem_comp.formula           'C2 H3 O2 -1' 
_chem_comp.formula_weight    59.044 
_chem_comp.id                ACT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ACETATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C O ACT doub 42 n n 
C OXT ACT sing 43 n n 
C CH3 ACT sing 44 n n 
CH3 H1 ACT sing 45 n n 
CH3 H2 ACT sing 46 n n 
CH3 H3 ACT sing 47 n n 
#
_atom_sites.entry_id                     4DK7 
_atom_sites.fract_transf_matrix[1][1]    0.01146 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01146 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005058 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 0KS A 1 501 1 0KS 0KS . 
F 4 ACT A 1 502 1 ACT ACT . 
G 5 CA A 1 503 1 CA CA . 
H 5 CA A 1 504 2 CA CA . 
I 5 CA A 1 505 4 CA CA . 
J 5 CA A 1 506 5 CA CA . 
K 5 CA A 1 507 6 CA CA . 
L 3 0KS C 1 501 1 0KS 0KS . 
M 5 CA C 1 502 3 CA CA . 
N 5 CA C 1 503 7 CA CA . 
O 6 HOH A 1 601 2 HOH HOH . 
O 6 HOH A 2 602 3 HOH HOH . 
O 6 HOH A 3 603 4 HOH HOH . 
O 6 HOH A 4 604 5 HOH HOH . 
O 6 HOH A 5 605 6 HOH HOH . 
O 6 HOH A 6 606 7 HOH HOH . 
O 6 HOH A 7 607 8 HOH HOH . 
O 6 HOH A 8 608 9 HOH HOH . 
O 6 HOH A 9 609 10 HOH HOH . 
O 6 HOH A 10 610 11 HOH HOH . 
O 6 HOH A 11 611 12 HOH HOH . 
O 6 HOH A 12 612 15 HOH HOH . 
O 6 HOH A 13 613 16 HOH HOH . 
O 6 HOH A 14 614 21 HOH HOH . 
O 6 HOH A 15 615 22 HOH HOH . 
O 6 HOH A 16 616 35 HOH HOH . 
O 6 HOH A 17 617 36 HOH HOH . 
O 6 HOH A 18 618 37 HOH HOH . 
O 6 HOH A 19 619 38 HOH HOH . 
O 6 HOH A 20 620 40 HOH HOH . 
O 6 HOH A 21 621 42 HOH HOH . 
O 6 HOH A 22 622 43 HOH HOH . 
O 6 HOH A 23 623 44 HOH HOH . 
O 6 HOH A 24 624 45 HOH HOH . 
O 6 HOH A 25 625 48 HOH HOH . 
O 6 HOH A 26 626 49 HOH HOH . 
O 6 HOH A 27 627 50 HOH HOH . 
O 6 HOH A 28 628 51 HOH HOH . 
O 6 HOH A 29 629 52 HOH HOH . 
O 6 HOH A 30 630 53 HOH HOH . 
O 6 HOH A 31 631 54 HOH HOH . 
O 6 HOH A 32 632 55 HOH HOH . 
O 6 HOH A 33 633 56 HOH HOH . 
O 6 HOH A 34 634 58 HOH HOH . 
O 6 HOH A 35 635 59 HOH HOH . 
O 6 HOH A 36 636 62 HOH HOH . 
O 6 HOH A 37 637 63 HOH HOH . 
O 6 HOH A 38 638 64 HOH HOH . 
O 6 HOH A 39 639 65 HOH HOH . 
O 6 HOH A 40 640 66 HOH HOH . 
O 6 HOH A 41 641 68 HOH HOH . 
O 6 HOH A 42 642 69 HOH HOH . 
O 6 HOH A 43 643 70 HOH HOH . 
O 6 HOH A 44 644 71 HOH HOH . 
O 6 HOH A 45 645 81 HOH HOH . 
O 6 HOH A 46 646 97 HOH HOH . 
O 6 HOH A 47 647 100 HOH HOH . 
O 6 HOH A 48 648 102 HOH HOH . 
O 6 HOH A 49 649 103 HOH HOH . 
O 6 HOH A 50 650 106 HOH HOH . 
O 6 HOH A 51 651 107 HOH HOH . 
O 6 HOH A 52 652 114 HOH HOH . 
O 6 HOH A 53 653 115 HOH HOH . 
O 6 HOH A 54 654 120 HOH HOH . 
O 6 HOH A 55 655 121 HOH HOH . 
O 6 HOH A 56 656 122 HOH HOH . 
O 6 HOH A 57 657 123 HOH HOH . 
O 6 HOH A 58 658 124 HOH HOH . 
O 6 HOH A 59 659 128 HOH HOH . 
O 6 HOH A 60 660 129 HOH HOH . 
O 6 HOH A 61 661 130 HOH HOH . 
P 6 HOH B 1 401 67 HOH HOH . 
Q 6 HOH C 1 601 17 HOH HOH . 
Q 6 HOH C 2 602 18 HOH HOH . 
Q 6 HOH C 3 603 24 HOH HOH . 
Q 6 HOH C 4 604 25 HOH HOH . 
Q 6 HOH C 5 605 26 HOH HOH . 
Q 6 HOH C 6 606 27 HOH HOH . 
Q 6 HOH C 7 607 28 HOH HOH . 
Q 6 HOH C 8 608 29 HOH HOH . 
Q 6 HOH C 9 609 30 HOH HOH . 
Q 6 HOH C 10 610 31 HOH HOH . 
Q 6 HOH C 11 611 32 HOH HOH . 
Q 6 HOH C 12 612 33 HOH HOH . 
Q 6 HOH C 13 613 34 HOH HOH . 
Q 6 HOH C 14 614 46 HOH HOH . 
Q 6 HOH C 15 615 61 HOH HOH . 
Q 6 HOH C 16 616 74 HOH HOH . 
Q 6 HOH C 17 617 79 HOH HOH . 
Q 6 HOH C 18 618 80 HOH HOH . 
Q 6 HOH C 19 619 82 HOH HOH . 
Q 6 HOH C 20 620 83 HOH HOH . 
Q 6 HOH C 21 621 84 HOH HOH . 
Q 6 HOH C 22 622 85 HOH HOH . 
Q 6 HOH C 23 623 86 HOH HOH . 
Q 6 HOH C 24 624 87 HOH HOH . 
Q 6 HOH C 25 625 88 HOH HOH . 
Q 6 HOH C 26 626 90 HOH HOH . 
Q 6 HOH C 27 627 91 HOH HOH . 
Q 6 HOH C 28 628 98 HOH HOH . 
Q 6 HOH C 29 629 99 HOH HOH . 
Q 6 HOH C 30 630 104 HOH HOH . 
Q 6 HOH C 31 631 109 HOH HOH . 
Q 6 HOH C 32 632 111 HOH HOH . 
Q 6 HOH C 33 633 112 HOH HOH . 
Q 6 HOH C 34 634 118 HOH HOH . 
Q 6 HOH C 35 635 125 HOH HOH . 
Q 6 HOH C 36 636 126 HOH HOH . 
Q 6 HOH C 37 637 134 HOH HOH . 
R 6 HOH D 1 401 92 HOH HOH . 
R 6 HOH D 2 402 93 HOH HOH . 
R 6 HOH D 3 403 94 HOH HOH . 
R 6 HOH D 4 404 95 HOH HOH . 
R 6 HOH D 5 405 116 HOH HOH . 
R 6 HOH D 6 406 119 HOH HOH . 
R 6 HOH D 7 407 127 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C ACT . . . F 4 19.821 63.629 48.621 1 79.88 ? C ACT 502 A 1 
HETATM 2 O O ACT . . . F 4 20.2 63.344 49.775 1 75.47 ? O ACT 502 A 1 
HETATM 3 O OXT ACT . . . F 4 20.608 63.93 47.706 1 78.63 ? OXT ACT 502 A 1 
HETATM 4 C CH3 ACT . . . F 4 18.333 63.612 48.315 1 77.96 ? CH3 ACT 502 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           372 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           4 
#