data_4DKI
#
_model_server_result.job_id            V8z61W_QL4tdnyggA5KtMg 
_model_server_result.datetime_utc      '2024-12-01 18:15:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4dki 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":702}' 
#
_entry.id    4DKI 
#
_exptl.entry_id    4DKI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              61.017 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'BICARBONATE ION' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4DKI 
_cell.length_a            80.847 
_cell.length_b            103.471 
_cell.length_c            186.5 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4DKI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
PISA dimeric 2 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,K,T 1 1 
B,L,M,N,O,P,Q,R,S,U 2 1 
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A OG SER 381 A SER 403 1_555 C C RB6 . A RB6 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.423 ? 
covale ? covale2 B OG SER 381 B SER 403 1_555 L C RB6 . B RB6 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.426 ? 
metalc ? metalc1 A O GLY 113 A GLY 135 1_555 I CD CD . A CD 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? 
metalc ? metalc2 A ND1 HIS 121 A HIS 143 1_555 G CD CD . A CD 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? 
metalc ? metalc3 A OE1 GLU 123 A GLU 145 1_555 G CD CD . A CD 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? 
metalc ? metalc4 A OE2 GLU 123 A GLU 145 1_555 N CD CD . B CD 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? 
metalc ? metalc5 A OD1 ASP 187 A ASP 209 1_555 O CD CD . B CD 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? 
metalc ? metalc6 A OD2 ASP 187 A ASP 209 1_555 O CD CD . B CD 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? 
metalc ? metalc7 A NE2 HIS 289 A HIS 311 1_555 I CD CD . A CD 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? 
metalc ? metalc8 G CD CD . A CD 705 1_555 B OE2 GLU 123 B GLU 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? 
metalc ? metalc9 I CD CD . A CD 707 1_555 B OD2 ASP 187 B ASP 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? 
metalc ? metalc10 I CD CD . A CD 707 1_555 B OD1 ASP 187 B ASP 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? 
metalc ? metalc11 B O GLY 113 B GLY 135 1_555 O CD CD . B CD 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? 
metalc ? metalc12 B ND1 HIS 121 B HIS 143 1_555 N CD CD . B CD 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? 
metalc ? metalc13 B OE1 GLU 123 B GLU 145 1_555 N CD CD . B CD 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? 
metalc ? metalc14 B NE2 HIS 210 B HIS 232 1_555 P CD CD . B CD 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.542 ? 
metalc ? metalc15 B NE2 HIS 289 B HIS 311 1_555 O CD CD . B CD 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? 
metalc ? metalc16 B OD2 ASP 551 B ASP 573 1_555 Q CD CD . B CD 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? 
metalc ? metalc17 B OD1 ASP 551 B ASP 573 1_555 Q CD CD . B CD 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.532 ? 
#
_chem_comp.formula           'C H O3 -1' 
_chem_comp.formula_weight    61.017 
_chem_comp.id                BCT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'BICARBONATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C O1 BCT doub 70 n n 
C O2 BCT sing 71 n n 
C O3 BCT sing 72 n n 
O3 HO3 BCT sing 73 n n 
#
_atom_sites.entry_id                     4DKI 
_atom_sites.fract_transf_matrix[1][1]    0.012369 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009665 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005362 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 RB6 A 1 701 669 RB6 RB6 . 
D 3 BCT A 1 702 1 BCT BCT . 
E 3 BCT A 1 703 1 BCT BCT . 
F 3 BCT A 1 704 1 BCT BCT . 
G 4 CD A 1 705 1001 CD CD . 
H 4 CD A 1 706 1004 CD CD . 
I 4 CD A 1 707 1005 CD CD . 
J 5 CL A 1 708 1009 CL CL . 
K 5 CL A 1 709 1011 CL CL . 
L 2 RB6 B 1 701 669 RB6 RB6 . 
M 3 BCT B 1 702 1 BCT BCT . 
N 4 CD B 1 703 1002 CD CD . 
O 4 CD B 1 704 1003 CD CD . 
P 4 CD B 1 705 1006 CD CD . 
Q 4 CD B 1 706 1007 CD CD . 
R 5 CL B 1 707 1008 CL CL . 
S 5 CL B 1 708 1010 CL CL . 
T 6 HOH A 1 801 5 HOH HOH . 
T 6 HOH A 2 802 6 HOH HOH . 
T 6 HOH A 3 803 7 HOH HOH . 
T 6 HOH A 4 804 1 HOH HOH . 
T 6 HOH A 5 805 2 HOH HOH . 
T 6 HOH A 6 806 11 HOH HOH . 
T 6 HOH A 7 807 15 HOH HOH . 
T 6 HOH A 8 808 18 HOH HOH . 
T 6 HOH A 9 809 20 HOH HOH . 
T 6 HOH A 10 810 21 HOH HOH . 
T 6 HOH A 11 811 22 HOH HOH . 
T 6 HOH A 12 812 23 HOH HOH . 
T 6 HOH A 13 813 24 HOH HOH . 
T 6 HOH A 14 814 25 HOH HOH . 
T 6 HOH A 15 815 1 HOH HOH . 
T 6 HOH A 16 816 4 HOH HOH . 
T 6 HOH A 17 817 8 HOH HOH . 
T 6 HOH A 18 818 11 HOH HOH . 
U 6 HOH B 1 801 1 HOH HOH . 
U 6 HOH B 2 802 3 HOH HOH . 
U 6 HOH B 3 803 8 HOH HOH . 
U 6 HOH B 4 804 9 HOH HOH . 
U 6 HOH B 5 805 3 HOH HOH . 
U 6 HOH B 6 806 4 HOH HOH . 
U 6 HOH B 7 807 6 HOH HOH . 
U 6 HOH B 8 808 9 HOH HOH . 
U 6 HOH B 9 809 12 HOH HOH . 
U 6 HOH B 10 810 16 HOH HOH . 
U 6 HOH B 11 811 17 HOH HOH . 
U 6 HOH B 12 812 19 HOH HOH . 
U 6 HOH B 13 813 26 HOH HOH . 
U 6 HOH B 14 814 2 HOH HOH . 
U 6 HOH B 15 815 3 HOH HOH . 
U 6 HOH B 16 816 5 HOH HOH . 
U 6 HOH B 17 817 6 HOH HOH . 
U 6 HOH B 18 818 7 HOH HOH . 
U 6 HOH B 19 819 9 HOH HOH . 
U 6 HOH B 20 820 10 HOH HOH . 
U 6 HOH B 21 821 12 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C BCT . . . M 3 33.863 66.188 11.766 1 103.99 ? C BCT 702 B 1 
HETATM 2 O O1 BCT . . . M 3 35.011 65.684 11.791 1 104.24 ? O1 BCT 702 B 1 
HETATM 3 O O2 BCT . . . M 3 32.847 65.543 12.122 1 102.4 ? O2 BCT 702 B 1 
HETATM 4 O O3 BCT . . . M 3 33.725 67.45 11.352 1 104.2 ? O3 BCT 702 B 1 
#
_model_server_stats.io_time_ms              24 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    31 
_model_server_stats.query_time_ms           275 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#