data_4DKL
#
_model_server_result.job_id            4jlU7jcWFgthp4aC9WFUqA 
_model_server_result.datetime_utc      '2024-11-05 12:30:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4dkl 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":601}' 
#
_entry.id    4DKL 
#
_exptl.entry_id    4DKL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              456.531 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'methyl 4-{[(5beta,6alpha)-17-(cyclopropylmethyl)-3,14-dihydroxy-4,5-epoxymorphinan-6-yl]amino}-4-oxobutanoate' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          107.84 
_cell.angle_gamma         90 
_cell.entry_id            4DKL 
_cell.length_a            70.882 
_cell.length_b            174.73 
_cell.length_c            68.353 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4DKL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_455 -x-1,y,-z -1 0 0 0 1 0 0 0 -1 -70.882 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 89 A CYS 140 1_555 A SG CYS 166 A CYS 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
covale ? covale1 A NZ LYS 182 A LYS 233 1_555 B CAW BF0 . A BF0 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.507 ? 
#
_chem_comp.formula           'C25 H32 N2 O6' 
_chem_comp.formula_weight    456.531 
_chem_comp.id                BF0 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'methyl 4-{[(5beta,6alpha)-17-(cyclopropylmethyl)-3,14-dihydroxy-4,5-epoxymorphinan-6-yl]amino}-4-oxobutanoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'beta-funaltrexamine, bound form' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CBF CBG BF0 sing 107 n n 
CBF CBE BF0 sing 108 n n 
CBG CBE BF0 sing 109 n n 
CBE CBD BF0 sing 110 n n 
OAS CAR BF0 sing 111 n n 
CBB OBA BF0 sing 112 n n 
CBD NAJ BF0 sing 113 n n 
CAI NAJ BF0 sing 114 n n 
CAI CAR BF0 sing 115 n n 
CAI CAH BF0 sing 116 n n 
NAJ CAK BF0 sing 117 n n 
CAQ CAR BF0 sing 118 n n 
CAQ CAP BF0 sing 119 n n 
CAR CAM BF0 sing 120 n n 
CAP CAO BF0 sing 121 n n 
OAZ CAY BF0 doub 122 n n 
CAH CAG BF0 sing 123 n n 
OBA CAY BF0 sing 124 n n 
CAY CAX BF0 sing 125 n n 
CAK CAL BF0 sing 126 n n 
CAM CAL BF0 sing 127 n n 
CAM CAN BF0 sing 128 n n 
CAM CBC BF0 sing 129 n n 
CAO CAN BF0 sing 130 n n 
CAO NAT BF0 sing 131 n n 
CAG CBC BF0 doub 132 n y 
CAG CAF BF0 sing 133 n y 
CAN OAA BF0 sing 134 n n 
OAV CAU BF0 doub 135 n n 
CBC CAB BF0 sing 136 n y 
NAT CAU BF0 sing 137 n n 
CAU CAW BF0 sing 138 n n 
CAX CAW BF0 sing 139 n n 
CAF CAE BF0 doub 140 n y 
OAA CAB BF0 sing 141 n n 
CAB CAC BF0 doub 142 n y 
CAE CAC BF0 sing 143 n y 
CAC OAD BF0 sing 144 n n 
CBF H1 BF0 sing 145 n n 
CBF H2 BF0 sing 146 n n 
CBG H3 BF0 sing 147 n n 
CBG H4 BF0 sing 148 n n 
CBE H5 BF0 sing 149 n n 
CBD H6 BF0 sing 150 n n 
CBD H7 BF0 sing 151 n n 
CAK H9 BF0 sing 152 n n 
CAK H10 BF0 sing 153 n n 
CAL H11 BF0 sing 154 n n 
CAL H12 BF0 sing 155 n n 
CAN H13 BF0 sing 156 n n 
OAD H14 BF0 sing 157 n n 
CAE H15 BF0 sing 158 n n 
CAF H16 BF0 sing 159 n n 
CAH H17 BF0 sing 160 n n 
CAH H18 BF0 sing 161 n n 
CAI H19 BF0 sing 162 n n 
OAS H20 BF0 sing 163 n n 
CAQ H21 BF0 sing 164 n n 
CAQ H22 BF0 sing 165 n n 
CAP H23 BF0 sing 166 n n 
CAP H24 BF0 sing 167 n n 
CAO H25 BF0 sing 168 n n 
NAT H26 BF0 sing 169 n n 
CAW H27 BF0 sing 170 n n 
CAW H28 BF0 sing 171 n n 
CAX H29 BF0 sing 172 n n 
CAX H30 BF0 sing 173 n n 
CBB H31 BF0 sing 174 n n 
CBB H32 BF0 sing 175 n n 
CBB H33 BF0 sing 176 n n 
#
_atom_sites.entry_id                     4DKL 
_atom_sites.fract_transf_matrix[1][1]    0.014108 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00454 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005723 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015369 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 BF0 A 1 601 1500 BF0 DRG . 
C 3 SO4 A 1 602 1 SO4 SO4 . 
D 3 SO4 A 1 603 2 SO4 SO4 . 
E 3 SO4 A 1 604 3 SO4 SO4 . 
F 3 SO4 A 1 605 4 SO4 SO4 . 
G 3 SO4 A 1 606 5 SO4 SO4 . 
H 3 SO4 A 1 607 6 SO4 SO4 . 
I 3 SO4 A 1 608 7 SO4 SO4 . 
J 3 SO4 A 1 609 8 SO4 SO4 . 
K 3 SO4 A 1 610 9 SO4 SO4 . 
L 3 SO4 A 1 611 10 SO4 SO4 . 
M 3 SO4 A 1 612 11 SO4 SO4 . 
N 3 SO4 A 1 613 12 SO4 SO4 . 
O 4 CLR A 1 614 1 CLR CLR . 
P 5 MPG A 1 615 2 MPG MPG . 
Q 5 MPG A 1 616 3 MPG MPG . 
R 6 1PE A 1 617 1 1PE 1PE . 
S 7 CL A 1 618 1 CL CL . 
T 8 HOH A 1 701 1 HOH HOH . 
T 8 HOH A 2 702 2 HOH HOH . 
T 8 HOH A 3 703 3 HOH HOH . 
T 8 HOH A 4 704 4 HOH HOH . 
T 8 HOH A 5 705 5 HOH HOH . 
T 8 HOH A 6 706 6 HOH HOH . 
T 8 HOH A 7 707 7 HOH HOH . 
T 8 HOH A 8 708 8 HOH HOH . 
T 8 HOH A 9 709 9 HOH HOH . 
T 8 HOH A 10 710 10 HOH HOH . 
T 8 HOH A 11 711 11 HOH HOH . 
T 8 HOH A 12 712 12 HOH HOH . 
T 8 HOH A 13 713 13 HOH HOH . 
T 8 HOH A 14 714 14 HOH HOH . 
T 8 HOH A 15 715 15 HOH HOH . 
T 8 HOH A 16 716 16 HOH HOH . 
T 8 HOH A 17 717 17 HOH HOH . 
T 8 HOH A 18 718 18 HOH HOH . 
T 8 HOH A 19 719 19 HOH HOH . 
T 8 HOH A 20 720 20 HOH HOH . 
T 8 HOH A 21 721 21 HOH HOH . 
T 8 HOH A 22 722 22 HOH HOH . 
T 8 HOH A 23 723 23 HOH HOH . 
T 8 HOH A 24 724 24 HOH HOH . 
T 8 HOH A 25 725 25 HOH HOH . 
T 8 HOH A 26 726 26 HOH HOH . 
T 8 HOH A 27 727 27 HOH HOH . 
T 8 HOH A 28 728 28 HOH HOH . 
T 8 HOH A 29 729 29 HOH HOH . 
T 8 HOH A 30 730 30 HOH HOH . 
T 8 HOH A 31 731 31 HOH HOH . 
T 8 HOH A 32 732 32 HOH HOH . 
T 8 HOH A 33 733 33 HOH HOH . 
T 8 HOH A 34 734 34 HOH HOH . 
T 8 HOH A 35 735 35 HOH HOH . 
T 8 HOH A 36 736 36 HOH HOH . 
T 8 HOH A 37 737 37 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CBF BF0 . . . B 2 -27.674 -8.743 -15.007 1 44.65 ? CBF BF0 601 A 1 
HETATM 2 C CBG BF0 . . . B 2 -27.434 -7.353 -14.448 1 47.33 ? CBG BF0 601 A 1 
HETATM 3 C CBE BF0 . . . B 2 -26.336 -8.407 -14.33 1 44.93 ? CBE BF0 601 A 1 
HETATM 4 C CBD BF0 . . . B 2 -25.984 -8.851 -12.878 1 62.23 ? CBD BF0 601 A 1 
HETATM 5 N NAJ BF0 . . . B 2 -25.934 -10.308 -12.595 1 61.16 ? NAJ BF0 601 A 1 
HETATM 6 C CAK BF0 . . . B 2 -25.51 -10.46 -11.222 1 59.73 ? CAK BF0 601 A 1 
HETATM 7 C CAL BF0 . . . B 2 -25.414 -11.906 -10.78 1 59.03 ? CAL BF0 601 A 1 
HETATM 8 C CAM BF0 . . . B 2 -26.812 -12.526 -10.96 1 62.23 ? CAM BF0 601 A 1 
HETATM 9 C CBC BF0 . . . B 2 -27.699 -11.843 -10.09 1 70.33 ? CBC BF0 601 A 1 
HETATM 10 C CAN BF0 . . . B 2 -26.844 -13.782 -10.383 1 60.56 ? CAN BF0 601 A 1 
HETATM 11 O OAA BF0 . . . B 2 -26.608 -13.297 -9 1 63.93 ? OAA BF0 601 A 1 
HETATM 12 C CAB BF0 . . . B 2 -27.656 -12.441 -8.864 1 69.22 ? CAB BF0 601 A 1 
HETATM 13 C CAC BF0 . . . B 2 -28.181 -11.619 -7.974 1 72.15 ? CAC BF0 601 A 1 
HETATM 14 O OAD BF0 . . . B 2 -28.156 -12.113 -6.708 1 74.78 ? OAD BF0 601 A 1 
HETATM 15 C CAE BF0 . . . B 2 -29.107 -10.618 -8.263 1 69.64 ? CAE BF0 601 A 1 
HETATM 16 C CAF BF0 . . . B 2 -29.238 -10.14 -9.555 1 68.14 ? CAF BF0 601 A 1 
HETATM 17 C CAG BF0 . . . B 2 -28.429 -10.775 -10.475 1 70.6 ? CAG BF0 601 A 1 
HETATM 18 C CAH BF0 . . . B 2 -28.499 -10.494 -11.86 1 69.87 ? CAH BF0 601 A 1 
HETATM 19 C CAI BF0 . . . B 2 -27.259 -10.996 -12.682 1 56.83 ? CAI BF0 601 A 1 
HETATM 20 C CAR BF0 . . . B 2 -27.26 -12.476 -12.41 1 56.55 ? CAR BF0 601 A 1 
HETATM 21 O OAS BF0 . . . B 2 -26.332 -13.147 -13.263 1 59.75 ? OAS BF0 601 A 1 
HETATM 22 C CAQ BF0 . . . B 2 -28.656 -13.091 -12.522 1 51.44 ? CAQ BF0 601 A 1 
HETATM 23 C CAP BF0 . . . B 2 -28.674 -14.519 -12.044 1 46.27 ? CAP BF0 601 A 1 
HETATM 24 C CAO BF0 . . . B 2 -28.226 -14.446 -10.537 1 61.67 ? CAO BF0 601 A 1 
HETATM 25 N NAT BF0 . . . B 2 -28.194 -15.779 -9.909 1 66.2 ? NAT BF0 601 A 1 
HETATM 26 C CAU BF0 . . . B 2 -29.302 -16.538 -9.812 1 67.07 ? CAU BF0 601 A 1 
HETATM 27 O OAV BF0 . . . B 2 -30.419 -16.187 -10.19 1 67.71 ? OAV BF0 601 A 1 
HETATM 28 C CAW BF0 . . . B 2 -29.118 -17.898 -9.138 1 65.65 ? CAW BF0 601 A 1 
HETATM 29 C CAX BF0 . . . B 2 -30.172 -18.853 -9.723 1 71.96 ? CAX BF0 601 A 1 
HETATM 30 C CAY BF0 . . . B 2 -30.053 -19.003 -11.252 1 74.52 ? CAY BF0 601 A 1 
HETATM 31 O OAZ BF0 . . . B 2 -31.056 -19.22 -11.934 1 73.47 ? OAZ BF0 601 A 1 
HETATM 32 O OBA BF0 . . . B 2 -28.801 -18.878 -11.772 1 74.09 ? OBA BF0 601 A 1 
HETATM 33 C CBB BF0 . . . B 2 -28.86 -19.034 -13.196 1 71.61 ? CBB BF0 601 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           231 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           33 
#