data_4DKL # _model_server_result.job_id xw55kOK5g7FztiYAx6_cCw _model_server_result.datetime_utc '2024-11-23 07:00:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4dkl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":611}' # _entry.id 4DKL # _exptl.entry_id 4DKL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.84 _cell.angle_gamma 90 _cell.entry_id 4DKL _cell.length_a 70.882 _cell.length_b 174.73 _cell.length_c 68.353 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4DKL _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_455 -x-1,y,-z -1 0 0 0 1 0 0 0 -1 -70.882 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 89 A CYS 140 1_555 A SG CYS 166 A CYS 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 A NZ LYS 182 A LYS 233 1_555 B CAW BF0 . A BF0 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.507 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 538 n n S O2 SO4 doub 539 n n S O3 SO4 sing 540 n n S O4 SO4 sing 541 n n # _atom_sites.entry_id 4DKL _atom_sites.fract_transf_matrix[1][1] 0.014108 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00454 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005723 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015369 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BF0 A 1 601 1500 BF0 DRG . C 3 SO4 A 1 602 1 SO4 SO4 . D 3 SO4 A 1 603 2 SO4 SO4 . E 3 SO4 A 1 604 3 SO4 SO4 . F 3 SO4 A 1 605 4 SO4 SO4 . G 3 SO4 A 1 606 5 SO4 SO4 . H 3 SO4 A 1 607 6 SO4 SO4 . I 3 SO4 A 1 608 7 SO4 SO4 . J 3 SO4 A 1 609 8 SO4 SO4 . K 3 SO4 A 1 610 9 SO4 SO4 . L 3 SO4 A 1 611 10 SO4 SO4 . M 3 SO4 A 1 612 11 SO4 SO4 . N 3 SO4 A 1 613 12 SO4 SO4 . O 4 CLR A 1 614 1 CLR CLR . P 5 MPG A 1 615 2 MPG MPG . Q 5 MPG A 1 616 3 MPG MPG . R 6 1PE A 1 617 1 1PE 1PE . S 7 CL A 1 618 1 CL CL . T 8 HOH A 1 701 1 HOH HOH . T 8 HOH A 2 702 2 HOH HOH . T 8 HOH A 3 703 3 HOH HOH . T 8 HOH A 4 704 4 HOH HOH . T 8 HOH A 5 705 5 HOH HOH . T 8 HOH A 6 706 6 HOH HOH . T 8 HOH A 7 707 7 HOH HOH . T 8 HOH A 8 708 8 HOH HOH . T 8 HOH A 9 709 9 HOH HOH . T 8 HOH A 10 710 10 HOH HOH . T 8 HOH A 11 711 11 HOH HOH . T 8 HOH A 12 712 12 HOH HOH . T 8 HOH A 13 713 13 HOH HOH . T 8 HOH A 14 714 14 HOH HOH . T 8 HOH A 15 715 15 HOH HOH . T 8 HOH A 16 716 16 HOH HOH . T 8 HOH A 17 717 17 HOH HOH . T 8 HOH A 18 718 18 HOH HOH . T 8 HOH A 19 719 19 HOH HOH . T 8 HOH A 20 720 20 HOH HOH . T 8 HOH A 21 721 21 HOH HOH . T 8 HOH A 22 722 22 HOH HOH . T 8 HOH A 23 723 23 HOH HOH . T 8 HOH A 24 724 24 HOH HOH . T 8 HOH A 25 725 25 HOH HOH . T 8 HOH A 26 726 26 HOH HOH . T 8 HOH A 27 727 27 HOH HOH . T 8 HOH A 28 728 28 HOH HOH . T 8 HOH A 29 729 29 HOH HOH . T 8 HOH A 30 730 30 HOH HOH . T 8 HOH A 31 731 31 HOH HOH . T 8 HOH A 32 732 32 HOH HOH . T 8 HOH A 33 733 33 HOH HOH . T 8 HOH A 34 734 34 HOH HOH . T 8 HOH A 35 735 35 HOH HOH . T 8 HOH A 36 736 36 HOH HOH . T 8 HOH A 37 737 37 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . L 3 -27.059 20.706 11.203 1 130.42 ? S SO4 611 A 1 HETATM 2 O O1 SO4 . . . L 3 -25.836 20.144 10.637 1 129.58 ? O1 SO4 611 A 1 HETATM 3 O O2 SO4 . . . L 3 -27.934 21.163 10.126 1 129.8 ? O2 SO4 611 A 1 HETATM 4 O O3 SO4 . . . L 3 -27.749 19.688 11.987 1 131.79 ? O3 SO4 611 A 1 HETATM 5 O O4 SO4 . . . L 3 -26.719 21.828 12.069 1 131.37 ? O4 SO4 611 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 387 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 5 #