data_4DKL # _model_server_result.job_id dHUKsA04qcm6vRBqvZGaGg _model_server_result.datetime_utc '2024-11-05 12:41:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4dkl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":614}' # _entry.id 4DKL # _exptl.entry_id 4DKL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 386.654 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.84 _cell.angle_gamma 90 _cell.entry_id 4DKL _cell.length_a 70.882 _cell.length_b 174.73 _cell.length_c 68.353 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4DKL _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_455 -x-1,y,-z -1 0 0 0 1 0 0 0 -1 -70.882 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id O _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 89 A CYS 140 1_555 A SG CYS 166 A CYS 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 A NZ LYS 182 A LYS 233 1_555 B CAW BF0 . A BF0 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.507 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CLR sing 177 n n C1 C10 CLR sing 178 n n C1 H11 CLR sing 179 n n C1 H12 CLR sing 180 n n C2 C3 CLR sing 181 n n C2 H21 CLR sing 182 n n C2 H22 CLR sing 183 n n C3 C4 CLR sing 184 n n C3 O1 CLR sing 185 n n C3 H3 CLR sing 186 n n C4 C5 CLR sing 187 n n C4 H41 CLR sing 188 n n C4 H42 CLR sing 189 n n C5 C6 CLR doub 190 n n C5 C10 CLR sing 191 n n C6 C7 CLR sing 192 n n C6 H6 CLR sing 193 n n C7 C8 CLR sing 194 n n C7 H71 CLR sing 195 n n C7 H72 CLR sing 196 n n C8 C9 CLR sing 197 n n C8 C14 CLR sing 198 n n C8 H8 CLR sing 199 n n C9 C10 CLR sing 200 n n C9 C11 CLR sing 201 n n C9 H9 CLR sing 202 n n C10 C19 CLR sing 203 n n C11 C12 CLR sing 204 n n C11 H111 CLR sing 205 n n C11 H112 CLR sing 206 n n C12 C13 CLR sing 207 n n C12 H121 CLR sing 208 n n C12 H122 CLR sing 209 n n C13 C14 CLR sing 210 n n C13 C17 CLR sing 211 n n C13 C18 CLR sing 212 n n C14 C15 CLR sing 213 n n C14 H14 CLR sing 214 n n C15 C16 CLR sing 215 n n C15 H151 CLR sing 216 n n C15 H152 CLR sing 217 n n C16 C17 CLR sing 218 n n C16 H161 CLR sing 219 n n C16 H162 CLR sing 220 n n C17 C20 CLR sing 221 n n C17 H17 CLR sing 222 n n C18 H181 CLR sing 223 n n C18 H182 CLR sing 224 n n C18 H183 CLR sing 225 n n C19 H191 CLR sing 226 n n C19 H192 CLR sing 227 n n C19 H193 CLR sing 228 n n C20 C21 CLR sing 229 n n C20 C22 CLR sing 230 n n C20 H20 CLR sing 231 n n C21 H211 CLR sing 232 n n C21 H212 CLR sing 233 n n C21 H213 CLR sing 234 n n C22 C23 CLR sing 235 n n C22 H221 CLR sing 236 n n C22 H222 CLR sing 237 n n C23 C24 CLR sing 238 n n C23 H231 CLR sing 239 n n C23 H232 CLR sing 240 n n C24 C25 CLR sing 241 n n C24 H241 CLR sing 242 n n C24 H242 CLR sing 243 n n C25 C26 CLR sing 244 n n C25 C27 CLR sing 245 n n C25 H25 CLR sing 246 n n C26 H261 CLR sing 247 n n C26 H262 CLR sing 248 n n C26 H263 CLR sing 249 n n C27 H271 CLR sing 250 n n C27 H272 CLR sing 251 n n C27 H273 CLR sing 252 n n O1 H1 CLR sing 253 n n # _atom_sites.entry_id 4DKL _atom_sites.fract_transf_matrix[1][1] 0.014108 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00454 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005723 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015369 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BF0 A 1 601 1500 BF0 DRG . C 3 SO4 A 1 602 1 SO4 SO4 . D 3 SO4 A 1 603 2 SO4 SO4 . E 3 SO4 A 1 604 3 SO4 SO4 . F 3 SO4 A 1 605 4 SO4 SO4 . G 3 SO4 A 1 606 5 SO4 SO4 . H 3 SO4 A 1 607 6 SO4 SO4 . I 3 SO4 A 1 608 7 SO4 SO4 . J 3 SO4 A 1 609 8 SO4 SO4 . K 3 SO4 A 1 610 9 SO4 SO4 . L 3 SO4 A 1 611 10 SO4 SO4 . M 3 SO4 A 1 612 11 SO4 SO4 . N 3 SO4 A 1 613 12 SO4 SO4 . O 4 CLR A 1 614 1 CLR CLR . P 5 MPG A 1 615 2 MPG MPG . Q 5 MPG A 1 616 3 MPG MPG . R 6 1PE A 1 617 1 1PE 1PE . S 7 CL A 1 618 1 CL CL . T 8 HOH A 1 701 1 HOH HOH . T 8 HOH A 2 702 2 HOH HOH . T 8 HOH A 3 703 3 HOH HOH . T 8 HOH A 4 704 4 HOH HOH . T 8 HOH A 5 705 5 HOH HOH . T 8 HOH A 6 706 6 HOH HOH . T 8 HOH A 7 707 7 HOH HOH . T 8 HOH A 8 708 8 HOH HOH . T 8 HOH A 9 709 9 HOH HOH . T 8 HOH A 10 710 10 HOH HOH . T 8 HOH A 11 711 11 HOH HOH . T 8 HOH A 12 712 12 HOH HOH . T 8 HOH A 13 713 13 HOH HOH . T 8 HOH A 14 714 14 HOH HOH . T 8 HOH A 15 715 15 HOH HOH . T 8 HOH A 16 716 16 HOH HOH . T 8 HOH A 17 717 17 HOH HOH . T 8 HOH A 18 718 18 HOH HOH . T 8 HOH A 19 719 19 HOH HOH . T 8 HOH A 20 720 20 HOH HOH . T 8 HOH A 21 721 21 HOH HOH . T 8 HOH A 22 722 22 HOH HOH . T 8 HOH A 23 723 23 HOH HOH . T 8 HOH A 24 724 24 HOH HOH . T 8 HOH A 25 725 25 HOH HOH . T 8 HOH A 26 726 26 HOH HOH . T 8 HOH A 27 727 27 HOH HOH . T 8 HOH A 28 728 28 HOH HOH . T 8 HOH A 29 729 29 HOH HOH . T 8 HOH A 30 730 30 HOH HOH . T 8 HOH A 31 731 31 HOH HOH . T 8 HOH A 32 732 32 HOH HOH . T 8 HOH A 33 733 33 HOH HOH . T 8 HOH A 34 734 34 HOH HOH . T 8 HOH A 35 735 35 HOH HOH . T 8 HOH A 36 736 36 HOH HOH . T 8 HOH A 37 737 37 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . O 4 -44.347 -14.266 -10.719 1 107.02 ? C1 CLR 614 A 1 HETATM 2 C C2 CLR . . . O 4 -44.519 -15.741 -11.061 1 108.19 ? C2 CLR 614 A 1 HETATM 3 C C3 CLR . . . O 4 -44.665 -15.916 -12.566 1 107.17 ? C3 CLR 614 A 1 HETATM 4 C C4 CLR . . . O 4 -43.358 -15.486 -13.218 1 106.13 ? C4 CLR 614 A 1 HETATM 5 C C5 CLR . . . O 4 -43.084 -14.05 -12.837 1 107.37 ? C5 CLR 614 A 1 HETATM 6 C C6 CLR . . . O 4 -42.81 -13.181 -13.823 1 107.95 ? C6 CLR 614 A 1 HETATM 7 C C7 CLR . . . O 4 -42.807 -11.688 -13.62 1 107.17 ? C7 CLR 614 A 1 HETATM 8 C C8 CLR . . . O 4 -42.358 -11.36 -12.208 1 106.85 ? C8 CLR 614 A 1 HETATM 9 C C9 CLR . . . O 4 -43.167 -12.144 -11.18 1 106.28 ? C9 CLR 614 A 1 HETATM 10 C C10 CLR . . . O 4 -43.109 -13.659 -11.375 1 106.17 ? C10 CLR 614 A 1 HETATM 11 C C11 CLR . . . O 4 -42.759 -11.745 -9.756 1 106.83 ? C11 CLR 614 A 1 HETATM 12 C C12 CLR . . . O 4 -42.849 -10.237 -9.508 1 107.81 ? C12 CLR 614 A 1 HETATM 13 C C13 CLR . . . O 4 -42.044 -9.492 -10.561 1 106.19 ? C13 CLR 614 A 1 HETATM 14 C C14 CLR . . . O 4 -42.581 -9.886 -11.919 1 107.51 ? C14 CLR 614 A 1 HETATM 15 C C15 CLR . . . O 4 -41.983 -8.872 -12.882 1 108.33 ? C15 CLR 614 A 1 HETATM 16 C C16 CLR . . . O 4 -41.972 -7.583 -12.061 1 107.52 ? C16 CLR 614 A 1 HETATM 17 C C17 CLR . . . O 4 -42.184 -7.975 -10.593 1 106.12 ? C17 CLR 614 A 1 HETATM 18 C C18 CLR . . . O 4 -40.565 -9.856 -10.446 1 103.55 ? C18 CLR 614 A 1 HETATM 19 C C19 CLR . . . O 4 -41.859 -14.227 -10.715 1 104.84 ? C19 CLR 614 A 1 HETATM 20 C C20 CLR . . . O 4 -41.255 -7.218 -9.643 1 104.34 ? C20 CLR 614 A 1 HETATM 21 C C21 CLR . . . O 4 -41.907 -7.019 -8.276 1 102.26 ? C21 CLR 614 A 1 HETATM 22 C C22 CLR . . . O 4 -40.809 -5.896 -10.266 1 103.39 ? C22 CLR 614 A 1 HETATM 23 C C23 CLR . . . O 4 -40.759 -4.733 -9.281 1 104.07 ? C23 CLR 614 A 1 HETATM 24 C C24 CLR . . . O 4 -41.269 -3.464 -9.956 1 106.48 ? C24 CLR 614 A 1 HETATM 25 C C25 CLR . . . O 4 -40.22 -2.361 -9.961 1 108 ? C25 CLR 614 A 1 HETATM 26 C C26 CLR . . . O 4 -40.258 -1.564 -8.663 1 108.82 ? C26 CLR 614 A 1 HETATM 27 C C27 CLR . . . O 4 -40.412 -1.438 -11.159 1 107.05 ? C27 CLR 614 A 1 HETATM 28 O O1 CLR . . . O 4 -44.94 -17.285 -12.878 1 106.5 ? O1 CLR 614 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 28 #