data_4DKL # _model_server_result.job_id n0TpQrr-PFh8DQsXK2B-Pw _model_server_result.datetime_utc '2024-11-23 06:28:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4dkl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":616}' # _entry.id 4DKL # _exptl.entry_id 4DKL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(Z)-octadec-9-enyl] (2R)-2,3-bis(oxidanyl)propanoate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.84 _cell.angle_gamma 90 _cell.entry_id 4DKL _cell.length_a 70.882 _cell.length_b 174.73 _cell.length_c 68.353 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4DKL _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_455 -x-1,y,-z -1 0 0 0 1 0 0 0 -1 -70.882 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 P N N ? 5 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 89 A CYS 140 1_555 A SG CYS 166 A CYS 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 A NZ LYS 182 A LYS 233 1_555 B CAW BF0 . A BF0 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.507 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id MPG _chem_comp.mon_nstd_flag . _chem_comp.name '[(Z)-octadec-9-enyl] (2R)-2,3-bis(oxidanyl)propanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C3 MPG sing 421 n n C2 C1 MPG sing 422 n n C3 C4 MPG sing 423 n n C4 C5 MPG sing 424 n n C5 C6 MPG sing 425 n n C6 C7 MPG sing 426 n n C7 C8 MPG sing 427 n n C8 C9 MPG sing 428 n n C9 C10 MPG doub 429 z n C10 C11 MPG sing 430 n n C11 C12 MPG sing 431 n n C12 C13 MPG sing 432 n n C13 C14 MPG sing 433 n n C14 C15 MPG sing 434 n n C15 C16 MPG sing 435 n n C16 C17 MPG sing 436 n n C17 C18 MPG sing 437 n n O1 C1 MPG sing 438 n n O1 CX3 MPG sing 439 n n CXD O2 MPG sing 440 n n CXD C21 MPG sing 441 n n CXD CX3 MPG sing 442 n n C21 O3 MPG sing 443 n n C2 H21C MPG sing 444 n n C2 H22C MPG sing 445 n n C3 H31C MPG sing 446 n n C3 H32C MPG sing 447 n n CX3 O4 MPG doub 448 n n C4 H41C MPG sing 449 n n C4 H42C MPG sing 450 n n C5 H51C MPG sing 451 n n C5 H52C MPG sing 452 n n C6 H61C MPG sing 453 n n C6 H62C MPG sing 454 n n C7 H71C MPG sing 455 n n C7 H72C MPG sing 456 n n C8 H81C MPG sing 457 n n C8 H82C MPG sing 458 n n C9 H9 MPG sing 459 n n C10 H10 MPG sing 460 n n C11 H111 MPG sing 461 n n C11 H112 MPG sing 462 n n C12 H121 MPG sing 463 n n C12 H122 MPG sing 464 n n C13 H131 MPG sing 465 n n C13 H132 MPG sing 466 n n C14 H141 MPG sing 467 n n C14 H142 MPG sing 468 n n C15 H151 MPG sing 469 n n C15 H152 MPG sing 470 n n C16 H161 MPG sing 471 n n C16 H162 MPG sing 472 n n C17 H171 MPG sing 473 n n C17 H172 MPG sing 474 n n C18 H181 MPG sing 475 n n C18 H182 MPG sing 476 n n C18 H183 MPG sing 477 n n C1 HX31 MPG sing 478 n n C1 HX32 MPG sing 479 n n CXD HXD MPG sing 480 n n O2 H2 MPG sing 481 n n C21 H211 MPG sing 482 n n C21 H212 MPG sing 483 n n O3 H3 MPG sing 484 n n # _atom_sites.entry_id 4DKL _atom_sites.fract_transf_matrix[1][1] 0.014108 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00454 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005723 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015369 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BF0 A 1 601 1500 BF0 DRG . C 3 SO4 A 1 602 1 SO4 SO4 . D 3 SO4 A 1 603 2 SO4 SO4 . E 3 SO4 A 1 604 3 SO4 SO4 . F 3 SO4 A 1 605 4 SO4 SO4 . G 3 SO4 A 1 606 5 SO4 SO4 . H 3 SO4 A 1 607 6 SO4 SO4 . I 3 SO4 A 1 608 7 SO4 SO4 . J 3 SO4 A 1 609 8 SO4 SO4 . K 3 SO4 A 1 610 9 SO4 SO4 . L 3 SO4 A 1 611 10 SO4 SO4 . M 3 SO4 A 1 612 11 SO4 SO4 . N 3 SO4 A 1 613 12 SO4 SO4 . O 4 CLR A 1 614 1 CLR CLR . P 5 MPG A 1 615 2 MPG MPG . Q 5 MPG A 1 616 3 MPG MPG . R 6 1PE A 1 617 1 1PE 1PE . S 7 CL A 1 618 1 CL CL . T 8 HOH A 1 701 1 HOH HOH . T 8 HOH A 2 702 2 HOH HOH . T 8 HOH A 3 703 3 HOH HOH . T 8 HOH A 4 704 4 HOH HOH . T 8 HOH A 5 705 5 HOH HOH . T 8 HOH A 6 706 6 HOH HOH . T 8 HOH A 7 707 7 HOH HOH . T 8 HOH A 8 708 8 HOH HOH . T 8 HOH A 9 709 9 HOH HOH . T 8 HOH A 10 710 10 HOH HOH . T 8 HOH A 11 711 11 HOH HOH . T 8 HOH A 12 712 12 HOH HOH . T 8 HOH A 13 713 13 HOH HOH . T 8 HOH A 14 714 14 HOH HOH . T 8 HOH A 15 715 15 HOH HOH . T 8 HOH A 16 716 16 HOH HOH . T 8 HOH A 17 717 17 HOH HOH . T 8 HOH A 18 718 18 HOH HOH . T 8 HOH A 19 719 19 HOH HOH . T 8 HOH A 20 720 20 HOH HOH . T 8 HOH A 21 721 21 HOH HOH . T 8 HOH A 22 722 22 HOH HOH . T 8 HOH A 23 723 23 HOH HOH . T 8 HOH A 24 724 24 HOH HOH . T 8 HOH A 25 725 25 HOH HOH . T 8 HOH A 26 726 26 HOH HOH . T 8 HOH A 27 727 27 HOH HOH . T 8 HOH A 28 728 28 HOH HOH . T 8 HOH A 29 729 29 HOH HOH . T 8 HOH A 30 730 30 HOH HOH . T 8 HOH A 31 731 31 HOH HOH . T 8 HOH A 32 732 32 HOH HOH . T 8 HOH A 33 733 33 HOH HOH . T 8 HOH A 34 734 34 HOH HOH . T 8 HOH A 35 735 35 HOH HOH . T 8 HOH A 36 736 36 HOH HOH . T 8 HOH A 37 737 37 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 MPG . . . Q 5 -20.168 -6.266 -29.903 1 75.45 ? C2 MPG 616 A 1 HETATM 2 C C3 MPG . . . Q 5 -19.221 -5.37 -30.69 1 71.03 ? C3 MPG 616 A 1 HETATM 3 C C4 MPG . . . Q 5 -18.407 -4.47 -29.764 1 67.21 ? C4 MPG 616 A 1 HETATM 4 C C5 MPG . . . Q 5 -17.319 -3.743 -30.541 1 65.95 ? C5 MPG 616 A 1 HETATM 5 C C6 MPG . . . Q 5 -16.633 -2.672 -29.697 1 67.07 ? C6 MPG 616 A 1 HETATM 6 C C7 MPG . . . Q 5 -17.387 -1.349 -29.769 1 65.31 ? C7 MPG 616 A 1 HETATM 7 O O1 MPG . . . Q 5 -22.163 -7.657 -30.036 1 94.85 ? O1 MPG 616 A 1 HETATM 8 C C1 MPG . . . Q 5 -21.176 -6.968 -30.807 1 83.96 ? C1 MPG 616 A 1 HETATM 9 C CXD MPG . . . Q 5 -24.244 -9.149 -29.879 1 102.11 ? CXD MPG 616 A 1 HETATM 10 O O2 MPG . . . Q 5 -25.394 -9.408 -30.692 1 102.15 ? O2 MPG 616 A 1 HETATM 11 C C21 MPG . . . Q 5 -24.646 -8.385 -28.628 1 104.14 ? C21 MPG 616 A 1 HETATM 12 O O3 MPG . . . Q 5 -24.904 -9.319 -27.576 1 106.51 ? O3 MPG 616 A 1 HETATM 13 O O4 MPG . . . Q 5 -23.467 -8.156 -31.867 1 101.96 ? O4 MPG 616 A 1 HETATM 14 C CX3 MPG . . . Q 5 -23.295 -8.309 -30.668 1 100.8 ? CX3 MPG 616 A 1 # _model_server_stats.io_time_ms 74 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 14 #