data_4DKL # _model_server_result.job_id 8olF07oJJm0WSKUOx0v2oA _model_server_result.datetime_utc '2024-11-05 12:35:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4dkl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":617}' # _entry.id 4DKL # _exptl.entry_id 4DKL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.278 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PENTAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.84 _cell.angle_gamma 90 _cell.entry_id 4DKL _cell.length_a 70.882 _cell.length_b 174.73 _cell.length_c 68.353 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4DKL _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_455 -x-1,y,-z -1 0 0 0 1 0 0 0 -1 -70.882 0 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id R _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 89 A CYS 140 1_555 A SG CYS 166 A CYS 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 A NZ LYS 182 A LYS 233 1_555 B CAW BF0 . A BF0 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.507 ? # _chem_comp.formula 'C10 H22 O6' _chem_comp.formula_weight 238.278 _chem_comp.id 1PE _chem_comp.mon_nstd_flag . _chem_comp.name 'PENTAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PEG400 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OH2 C12 1PE sing 1 n n OH2 HO2 1PE sing 2 n n C12 C22 1PE sing 3 n n C12 H121 1PE sing 4 n n C12 H122 1PE sing 5 n n C22 OH3 1PE sing 6 n n C22 H221 1PE sing 7 n n C22 H222 1PE sing 8 n n OH3 C23 1PE sing 9 n n C13 C23 1PE sing 10 n n C13 OH4 1PE sing 11 n n C13 H131 1PE sing 12 n n C13 H132 1PE sing 13 n n C23 H231 1PE sing 14 n n C23 H232 1PE sing 15 n n OH4 C24 1PE sing 16 n n C14 C24 1PE sing 17 n n C14 OH5 1PE sing 18 n n C14 H141 1PE sing 19 n n C14 H142 1PE sing 20 n n C24 H241 1PE sing 21 n n C24 H242 1PE sing 22 n n OH5 C25 1PE sing 23 n n C15 C25 1PE sing 24 n n C15 OH6 1PE sing 25 n n C15 H151 1PE sing 26 n n C15 H152 1PE sing 27 n n C25 H251 1PE sing 28 n n C25 H252 1PE sing 29 n n OH6 C26 1PE sing 30 n n C16 C26 1PE sing 31 n n C16 OH7 1PE sing 32 n n C16 H161 1PE sing 33 n n C16 H162 1PE sing 34 n n C26 H261 1PE sing 35 n n C26 H262 1PE sing 36 n n OH7 HO7 1PE sing 37 n n # _atom_sites.entry_id 4DKL _atom_sites.fract_transf_matrix[1][1] 0.014108 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00454 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005723 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015369 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BF0 A 1 601 1500 BF0 DRG . C 3 SO4 A 1 602 1 SO4 SO4 . D 3 SO4 A 1 603 2 SO4 SO4 . E 3 SO4 A 1 604 3 SO4 SO4 . F 3 SO4 A 1 605 4 SO4 SO4 . G 3 SO4 A 1 606 5 SO4 SO4 . H 3 SO4 A 1 607 6 SO4 SO4 . I 3 SO4 A 1 608 7 SO4 SO4 . J 3 SO4 A 1 609 8 SO4 SO4 . K 3 SO4 A 1 610 9 SO4 SO4 . L 3 SO4 A 1 611 10 SO4 SO4 . M 3 SO4 A 1 612 11 SO4 SO4 . N 3 SO4 A 1 613 12 SO4 SO4 . O 4 CLR A 1 614 1 CLR CLR . P 5 MPG A 1 615 2 MPG MPG . Q 5 MPG A 1 616 3 MPG MPG . R 6 1PE A 1 617 1 1PE 1PE . S 7 CL A 1 618 1 CL CL . T 8 HOH A 1 701 1 HOH HOH . T 8 HOH A 2 702 2 HOH HOH . T 8 HOH A 3 703 3 HOH HOH . T 8 HOH A 4 704 4 HOH HOH . T 8 HOH A 5 705 5 HOH HOH . T 8 HOH A 6 706 6 HOH HOH . T 8 HOH A 7 707 7 HOH HOH . T 8 HOH A 8 708 8 HOH HOH . T 8 HOH A 9 709 9 HOH HOH . T 8 HOH A 10 710 10 HOH HOH . T 8 HOH A 11 711 11 HOH HOH . T 8 HOH A 12 712 12 HOH HOH . T 8 HOH A 13 713 13 HOH HOH . T 8 HOH A 14 714 14 HOH HOH . T 8 HOH A 15 715 15 HOH HOH . T 8 HOH A 16 716 16 HOH HOH . T 8 HOH A 17 717 17 HOH HOH . T 8 HOH A 18 718 18 HOH HOH . T 8 HOH A 19 719 19 HOH HOH . T 8 HOH A 20 720 20 HOH HOH . T 8 HOH A 21 721 21 HOH HOH . T 8 HOH A 22 722 22 HOH HOH . T 8 HOH A 23 723 23 HOH HOH . T 8 HOH A 24 724 24 HOH HOH . T 8 HOH A 25 725 25 HOH HOH . T 8 HOH A 26 726 26 HOH HOH . T 8 HOH A 27 727 27 HOH HOH . T 8 HOH A 28 728 28 HOH HOH . T 8 HOH A 29 729 29 HOH HOH . T 8 HOH A 30 730 30 HOH HOH . T 8 HOH A 31 731 31 HOH HOH . T 8 HOH A 32 732 32 HOH HOH . T 8 HOH A 33 733 33 HOH HOH . T 8 HOH A 34 734 34 HOH HOH . T 8 HOH A 35 735 35 HOH HOH . T 8 HOH A 36 736 36 HOH HOH . T 8 HOH A 37 737 37 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OH2 1PE . . . R 6 -35.532 -23.552 6.049 0.5 95.04 ? OH2 1PE 617 A 1 HETATM 2 C C12 1PE . . . R 6 -34.302 -24.18 6.431 0.5 94.93 ? C12 1PE 617 A 1 HETATM 3 C C22 1PE . . . R 6 -33.236 -23.844 5.402 0.5 94.25 ? C22 1PE 617 A 1 HETATM 4 O OH3 1PE . . . R 6 -33.69 -24.218 4.102 0.5 93.45 ? OH3 1PE 617 A 1 HETATM 5 C C13 1PE . . . R 6 -33.17 -24.292 1.741 0.5 90.59 ? C13 1PE 617 A 1 HETATM 6 C C23 1PE . . . R 6 -32.806 -23.723 3.107 0.5 92.65 ? C23 1PE 617 A 1 HETATM 7 O OH4 1PE . . . R 6 -34.437 -23.784 1.35 0.5 89.47 ? OH4 1PE 617 A 1 HETATM 8 C C14 1PE . . . R 6 -36.194 -23.776 -0.28 0.5 87.8 ? C14 1PE 617 A 1 HETATM 9 C C24 1PE . . . R 6 -34.81 -24.289 0.071 0.5 87.62 ? C24 1PE 617 A 1 HETATM 10 O OH5 1PE . . . R 6 -36.521 -24.238 -1.588 0.5 89.77 ? OH5 1PE 617 A 1 HETATM 11 C C15 1PE . . . R 6 -38.056 -24.205 -3.436 0.5 92.89 ? C15 1PE 617 A 1 HETATM 12 C C25 1PE . . . R 6 -37.779 -23.737 -2.011 0.5 91.01 ? C25 1PE 617 A 1 HETATM 13 O OH6 1PE . . . R 6 -37.24 -23.509 -4.367 0.5 93.4 ? OH6 1PE 617 A 1 HETATM 14 C C16 1PE . . . R 6 -36.528 -23.37 -6.668 0.5 95.04 ? C16 1PE 617 A 1 HETATM 15 C C26 1PE . . . R 6 -37.559 -23.92 -5.697 0.5 94.53 ? C26 1PE 617 A 1 HETATM 16 O OH7 1PE . . . R 6 -35.22 -23.77 -6.241 0.5 95.02 ? OH7 1PE 617 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 358 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 16 #