data_4DLO # _model_server_result.job_id Q0TnP62ZhOkcBASeR0Jrsg _model_server_result.datetime_utc '2024-11-22 04:51:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4dlo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":906}' # _entry.id 4DLO # _exptl.entry_id 4DLO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4DLO _cell.length_a 123.364 _cell.length_b 128.008 _cell.length_c 160.32 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4DLO _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,F,G,H,I,J,P 1 1 B,E,K,L,M,N,O,Q 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 L N N ? 4 M N N ? 4 N N N ? 4 O N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 FUL NAG C1 O1 . O3 HO3 . sing 2 ? 2 3 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG N 901 NAG 2 n C FUL 2 C 2 FUL N 903 FUC 2 n C NAG 3 C 3 NAG N 902 NAG 3 n D NAG 1 D 1 NAG N 911 NAG 3 n D NAG 2 D 2 NAG N 912 NAG 2 n E NAG 1 E 1 NAG M 901 NAG 2 n E FUL 2 E 2 FUL M 903 FUC 2 n E NAG 3 E 3 NAG M 902 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 20 A CYS 514 1_555 A SG CYS 55 A CYS 549 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf2 A SG CYS 43 A CYS 537 1_555 A SG CYS 73 A CYS 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? disulf ? disulf3 A SG CYS 325 A CYS 819 1_555 A SG CYS 357 A CYS 851 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 A SG CYS 345 A CYS 839 1_555 A SG CYS 359 A CYS 853 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? disulf ? disulf5 B SG CYS 8 B CYS 502 1_555 B SG CYS 13 B CYS 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf6 B SG CYS 20 B CYS 514 1_555 B SG CYS 55 B CYS 549 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? disulf ? disulf7 B SG CYS 43 B CYS 537 1_555 B SG CYS 73 B CYS 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? disulf ? disulf8 B SG CYS 325 B CYS 819 1_555 B SG CYS 357 B CYS 851 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf9 B SG CYS 345 B CYS 839 1_555 B SG CYS 359 B CYS 853 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 A ND2 ASN 46 A ASN 540 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale2 A ND2 ASN 131 A ASN 625 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale3 B ND2 ASN 46 B ASN 540 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale4 B ND2 ASN 131 B ASN 625 1_555 K C1 NAG . B NAG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale5 C O3 NAG . C NAG 1 1_555 C C1 FUL . C FUL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale6 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale7 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale8 E O3 NAG . E NAG 1 1_555 E C1 FUL . E FUL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale9 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 152 n n C1 C2 GOL sing 153 n n C1 H11 GOL sing 154 n n C1 H12 GOL sing 155 n n O1 HO1 GOL sing 156 n n C2 O2 GOL sing 157 n n C2 C3 GOL sing 158 n n C2 H2 GOL sing 159 n n O2 HO2 GOL sing 160 n n C3 O3 GOL sing 161 n n C3 H31 GOL sing 162 n n C3 H32 GOL sing 163 n n O3 HO3 GOL sing 164 n n # _atom_sites.entry_id 4DLO _atom_sites.fract_transf_matrix[1][1] 0.008106 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007812 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006238 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 4 GOL A 1 906 1 GOL GOL . G 4 GOL A 1 907 2 GOL GOL . H 4 GOL A 1 908 9 GOL GOL . I 4 GOL A 1 909 6 GOL GOL . J 4 GOL A 1 910 7 GOL GOL . K 5 NAG B 1 904 911 NAG NAG . L 4 GOL B 1 905 3 GOL GOL . M 4 GOL B 1 906 4 GOL GOL . N 4 GOL B 1 907 5 GOL GOL . O 4 GOL B 1 908 8 GOL GOL . P 6 HOH A 1 1001 3 HOH HOH . P 6 HOH A 2 1002 4 HOH HOH . P 6 HOH A 3 1003 5 HOH HOH . P 6 HOH A 4 1004 1004 HOH HOH . P 6 HOH A 5 1005 9 HOH HOH . P 6 HOH A 6 1006 10 HOH HOH . P 6 HOH A 7 1007 11 HOH HOH . P 6 HOH A 8 1008 17 HOH HOH . P 6 HOH A 9 1009 18 HOH HOH . P 6 HOH A 10 1010 19 HOH HOH . P 6 HOH A 11 1011 21 HOH HOH . P 6 HOH A 12 1012 22 HOH HOH . P 6 HOH A 13 1013 23 HOH HOH . P 6 HOH A 14 1014 25 HOH HOH . P 6 HOH A 15 1015 26 HOH HOH . P 6 HOH A 16 1016 29 HOH HOH . P 6 HOH A 17 1017 1017 HOH HOH . P 6 HOH A 18 1018 34 HOH HOH . P 6 HOH A 19 1019 38 HOH HOH . P 6 HOH A 20 1020 40 HOH HOH . P 6 HOH A 21 1021 41 HOH HOH . P 6 HOH A 22 1022 46 HOH HOH . P 6 HOH A 23 1023 47 HOH HOH . P 6 HOH A 24 1024 48 HOH HOH . P 6 HOH A 25 1025 50 HOH HOH . P 6 HOH A 26 1026 51 HOH HOH . P 6 HOH A 27 1027 52 HOH HOH . P 6 HOH A 28 1028 53 HOH HOH . P 6 HOH A 29 1029 54 HOH HOH . P 6 HOH A 30 1030 55 HOH HOH . P 6 HOH A 31 1031 56 HOH HOH . P 6 HOH A 32 1032 58 HOH HOH . P 6 HOH A 33 1033 59 HOH HOH . P 6 HOH A 34 1034 61 HOH HOH . P 6 HOH A 35 1035 64 HOH HOH . P 6 HOH A 36 1036 65 HOH HOH . P 6 HOH A 37 1037 67 HOH HOH . P 6 HOH A 38 1038 68 HOH HOH . P 6 HOH A 39 1039 69 HOH HOH . P 6 HOH A 40 1040 71 HOH HOH . P 6 HOH A 41 1041 72 HOH HOH . P 6 HOH A 42 1042 73 HOH HOH . P 6 HOH A 43 1043 74 HOH HOH . P 6 HOH A 44 1044 77 HOH HOH . P 6 HOH A 45 1045 78 HOH HOH . P 6 HOH A 46 1046 79 HOH HOH . P 6 HOH A 47 1047 80 HOH HOH . P 6 HOH A 48 1048 81 HOH HOH . P 6 HOH A 49 1049 82 HOH HOH . P 6 HOH A 50 1050 83 HOH HOH . P 6 HOH A 51 1051 84 HOH HOH . P 6 HOH A 52 1052 86 HOH HOH . P 6 HOH A 53 1053 87 HOH HOH . P 6 HOH A 54 1054 88 HOH HOH . P 6 HOH A 55 1055 90 HOH HOH . P 6 HOH A 56 1056 91 HOH HOH . P 6 HOH A 57 1057 92 HOH HOH . P 6 HOH A 58 1058 93 HOH HOH . P 6 HOH A 59 1059 1059 HOH HOH . P 6 HOH A 60 1060 96 HOH HOH . P 6 HOH A 61 1061 97 HOH HOH . P 6 HOH A 62 1062 98 HOH HOH . P 6 HOH A 63 1063 99 HOH HOH . P 6 HOH A 64 1064 100 HOH HOH . P 6 HOH A 65 1065 101 HOH HOH . P 6 HOH A 66 1066 102 HOH HOH . P 6 HOH A 67 1067 104 HOH HOH . P 6 HOH A 68 1068 105 HOH HOH . P 6 HOH A 69 1069 107 HOH HOH . P 6 HOH A 70 1070 108 HOH HOH . P 6 HOH A 71 1071 110 HOH HOH . P 6 HOH A 72 1072 111 HOH HOH . P 6 HOH A 73 1073 113 HOH HOH . P 6 HOH A 74 1074 115 HOH HOH . P 6 HOH A 75 1075 1075 HOH HOH . P 6 HOH A 76 1076 117 HOH HOH . P 6 HOH A 77 1077 118 HOH HOH . P 6 HOH A 78 1078 120 HOH HOH . P 6 HOH A 79 1079 121 HOH HOH . P 6 HOH A 80 1080 122 HOH HOH . P 6 HOH A 81 1081 123 HOH HOH . P 6 HOH A 82 1082 124 HOH HOH . P 6 HOH A 83 1083 125 HOH HOH . P 6 HOH A 84 1084 128 HOH HOH . P 6 HOH A 85 1085 129 HOH HOH . P 6 HOH A 86 1086 132 HOH HOH . P 6 HOH A 87 1087 135 HOH HOH . P 6 HOH A 88 1088 136 HOH HOH . P 6 HOH A 89 1089 137 HOH HOH . P 6 HOH A 90 1090 138 HOH HOH . P 6 HOH A 91 1091 141 HOH HOH . P 6 HOH A 92 1092 142 HOH HOH . P 6 HOH A 93 1093 143 HOH HOH . P 6 HOH A 94 1094 144 HOH HOH . P 6 HOH A 95 1095 147 HOH HOH . P 6 HOH A 96 1096 148 HOH HOH . P 6 HOH A 97 1097 149 HOH HOH . P 6 HOH A 98 1098 150 HOH HOH . P 6 HOH A 99 1099 152 HOH HOH . P 6 HOH A 100 1100 153 HOH HOH . P 6 HOH A 101 1101 154 HOH HOH . P 6 HOH A 102 1102 155 HOH HOH . P 6 HOH A 103 1103 157 HOH HOH . P 6 HOH A 104 1104 158 HOH HOH . P 6 HOH A 105 1105 159 HOH HOH . P 6 HOH A 106 1106 161 HOH HOH . Q 6 HOH B 1 1001 1 HOH HOH . Q 6 HOH B 2 1002 2 HOH HOH . Q 6 HOH B 3 1003 6 HOH HOH . Q 6 HOH B 4 1004 8 HOH HOH . Q 6 HOH B 5 1005 12 HOH HOH . Q 6 HOH B 6 1006 13 HOH HOH . Q 6 HOH B 7 1007 14 HOH HOH . Q 6 HOH B 8 1008 15 HOH HOH . Q 6 HOH B 9 1009 16 HOH HOH . Q 6 HOH B 10 1010 20 HOH HOH . Q 6 HOH B 11 1011 24 HOH HOH . Q 6 HOH B 12 1012 27 HOH HOH . Q 6 HOH B 13 1013 28 HOH HOH . Q 6 HOH B 14 1014 30 HOH HOH . Q 6 HOH B 15 1015 31 HOH HOH . Q 6 HOH B 16 1016 32 HOH HOH . Q 6 HOH B 17 1017 35 HOH HOH . Q 6 HOH B 18 1018 36 HOH HOH . Q 6 HOH B 19 1019 37 HOH HOH . Q 6 HOH B 20 1020 39 HOH HOH . Q 6 HOH B 21 1021 42 HOH HOH . Q 6 HOH B 22 1022 43 HOH HOH . Q 6 HOH B 23 1023 44 HOH HOH . Q 6 HOH B 24 1024 45 HOH HOH . Q 6 HOH B 25 1025 49 HOH HOH . Q 6 HOH B 26 1026 57 HOH HOH . Q 6 HOH B 27 1027 60 HOH HOH . Q 6 HOH B 28 1028 62 HOH HOH . Q 6 HOH B 29 1029 63 HOH HOH . Q 6 HOH B 30 1030 66 HOH HOH . Q 6 HOH B 31 1031 70 HOH HOH . Q 6 HOH B 32 1032 75 HOH HOH . Q 6 HOH B 33 1033 76 HOH HOH . Q 6 HOH B 34 1034 85 HOH HOH . Q 6 HOH B 35 1035 89 HOH HOH . Q 6 HOH B 36 1036 94 HOH HOH . Q 6 HOH B 37 1037 103 HOH HOH . Q 6 HOH B 38 1038 106 HOH HOH . Q 6 HOH B 39 1039 109 HOH HOH . Q 6 HOH B 40 1040 112 HOH HOH . Q 6 HOH B 41 1041 114 HOH HOH . Q 6 HOH B 42 1042 119 HOH HOH . Q 6 HOH B 43 1043 126 HOH HOH . Q 6 HOH B 44 1044 127 HOH HOH . Q 6 HOH B 45 1045 130 HOH HOH . Q 6 HOH B 46 1046 131 HOH HOH . Q 6 HOH B 47 1047 133 HOH HOH . Q 6 HOH B 48 1048 134 HOH HOH . Q 6 HOH B 49 1049 139 HOH HOH . Q 6 HOH B 50 1050 140 HOH HOH . Q 6 HOH B 51 1051 145 HOH HOH . Q 6 HOH B 52 1052 146 HOH HOH . Q 6 HOH B 53 1053 151 HOH HOH . Q 6 HOH B 54 1054 156 HOH HOH . Q 6 HOH B 55 1055 160 HOH HOH . Q 6 HOH B 56 1056 162 HOH HOH . Q 6 HOH B 57 1057 163 HOH HOH . Q 6 HOH B 58 1058 164 HOH HOH . Q 6 HOH B 59 1059 165 HOH HOH . Q 6 HOH B 60 1060 166 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 4 -41.895 33.274 4.634 1 96.69 ? C1 GOL 906 A 1 HETATM 2 O O1 GOL . . . F 4 -41.316 33.683 5.855 1 99.44 ? O1 GOL 906 A 1 HETATM 3 C C2 GOL . . . F 4 -41.363 31.887 4.296 1 93.96 ? C2 GOL 906 A 1 HETATM 4 O O2 GOL . . . F 4 -40.222 32.048 3.494 1 98.8 ? O2 GOL 906 A 1 HETATM 5 C C3 GOL . . . F 4 -42.396 31.083 3.511 1 84.53 ? C3 GOL 906 A 1 HETATM 6 O O3 GOL . . . F 4 -42.329 29.716 3.872 1 65.38 ? O3 GOL 906 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #