data_4DLP # _model_server_result.job_id dzT6lEA9W4c3hoJUA4_lfA _model_server_result.datetime_utc '2024-10-14 05:22:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4dlp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":601}' # _entry.id 4DLP # _exptl.entry_id 4DLP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 196.106 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description SELENOMETHIONINE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 119.67 _cell.angle_gamma 90 _cell.entry_id 4DLP _cell.length_a 116.25 _cell.length_b 77.62 _cell.length_c 116.27 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4DLP _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,G 1 1 B,E,H 2 1 C,F,I 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'C5 H11 N O2 Se' _chem_comp.formula_weight 196.106 _chem_comp.id MSE _chem_comp.mon_nstd_flag n _chem_comp.name SELENOMETHIONINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA MSE sing 237 n n N H MSE sing 238 n n N H2 MSE sing 239 n n CA C MSE sing 240 n n CA CB MSE sing 241 n n CA HA MSE sing 242 n n C O MSE doub 243 n n C OXT MSE sing 244 n n OXT HXT MSE sing 245 n n CB CG MSE sing 246 n n CB HB2 MSE sing 247 n n CB HB3 MSE sing 248 n n CG SE MSE sing 249 n n CG HG2 MSE sing 250 n n CG HG3 MSE sing 251 n n SE CE MSE sing 252 n n CE HE1 MSE sing 253 n n CE HE2 MSE sing 254 n n CE HE3 MSE sing 255 n n # _atom_sites.entry_id 4DLP _atom_sites.fract_transf_matrix[1][1] 0.008602 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004901 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012883 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009898 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 MSE A 1 601 521 MSE MSE . E 2 MSE B 1 601 521 MSE MSE . F 2 MSE C 1 601 521 MSE MSE . G 3 HOH A 1 701 1 HOH HOH . G 3 HOH A 2 702 2 HOH HOH . G 3 HOH A 3 703 3 HOH HOH . G 3 HOH A 4 704 4 HOH HOH . G 3 HOH A 5 705 5 HOH HOH . G 3 HOH A 6 706 6 HOH HOH . G 3 HOH A 7 707 7 HOH HOH . G 3 HOH A 8 708 8 HOH HOH . G 3 HOH A 9 709 9 HOH HOH . G 3 HOH A 10 710 10 HOH HOH . G 3 HOH A 11 711 11 HOH HOH . G 3 HOH A 12 712 12 HOH HOH . G 3 HOH A 13 713 13 HOH HOH . G 3 HOH A 14 714 14 HOH HOH . G 3 HOH A 15 715 15 HOH HOH . G 3 HOH A 16 716 16 HOH HOH . G 3 HOH A 17 717 17 HOH HOH . G 3 HOH A 18 718 18 HOH HOH . G 3 HOH A 19 719 19 HOH HOH . G 3 HOH A 20 720 20 HOH HOH . G 3 HOH A 21 721 21 HOH HOH . G 3 HOH A 22 722 22 HOH HOH . G 3 HOH A 23 723 23 HOH HOH . G 3 HOH A 24 724 24 HOH HOH . G 3 HOH A 25 725 25 HOH HOH . G 3 HOH A 26 726 26 HOH HOH . G 3 HOH A 27 727 27 HOH HOH . G 3 HOH A 28 728 28 HOH HOH . G 3 HOH A 29 729 29 HOH HOH . G 3 HOH A 30 730 30 HOH HOH . G 3 HOH A 31 731 31 HOH HOH . G 3 HOH A 32 732 32 HOH HOH . G 3 HOH A 33 733 33 HOH HOH . G 3 HOH A 34 734 34 HOH HOH . G 3 HOH A 35 735 35 HOH HOH . G 3 HOH A 36 736 36 HOH HOH . G 3 HOH A 37 737 37 HOH HOH . G 3 HOH A 38 738 39 HOH HOH . G 3 HOH A 39 739 40 HOH HOH . G 3 HOH A 40 740 41 HOH HOH . G 3 HOH A 41 741 85 HOH HOH . G 3 HOH A 42 742 86 HOH HOH . G 3 HOH A 43 743 87 HOH HOH . G 3 HOH A 44 744 88 HOH HOH . H 3 HOH B 1 701 38 HOH HOH . H 3 HOH B 2 702 42 HOH HOH . H 3 HOH B 3 703 43 HOH HOH . H 3 HOH B 4 704 44 HOH HOH . H 3 HOH B 5 705 45 HOH HOH . H 3 HOH B 6 706 46 HOH HOH . H 3 HOH B 7 707 47 HOH HOH . H 3 HOH B 8 708 48 HOH HOH . H 3 HOH B 9 709 49 HOH HOH . H 3 HOH B 10 710 50 HOH HOH . H 3 HOH B 11 711 51 HOH HOH . H 3 HOH B 12 712 52 HOH HOH . H 3 HOH B 13 713 53 HOH HOH . H 3 HOH B 14 714 54 HOH HOH . H 3 HOH B 15 715 55 HOH HOH . H 3 HOH B 16 716 56 HOH HOH . H 3 HOH B 17 717 57 HOH HOH . H 3 HOH B 18 718 58 HOH HOH . H 3 HOH B 19 719 59 HOH HOH . H 3 HOH B 20 720 60 HOH HOH . H 3 HOH B 21 721 61 HOH HOH . H 3 HOH B 22 722 62 HOH HOH . H 3 HOH B 23 723 63 HOH HOH . H 3 HOH B 24 724 64 HOH HOH . H 3 HOH B 25 725 65 HOH HOH . H 3 HOH B 26 726 66 HOH HOH . H 3 HOH B 27 727 73 HOH HOH . H 3 HOH B 28 728 82 HOH HOH . H 3 HOH B 29 729 83 HOH HOH . H 3 HOH B 30 730 84 HOH HOH . H 3 HOH B 31 731 89 HOH HOH . H 3 HOH B 32 732 90 HOH HOH . I 3 HOH C 1 701 67 HOH HOH . I 3 HOH C 2 702 68 HOH HOH . I 3 HOH C 3 703 69 HOH HOH . I 3 HOH C 4 704 70 HOH HOH . I 3 HOH C 5 705 71 HOH HOH . I 3 HOH C 6 706 72 HOH HOH . I 3 HOH C 7 707 74 HOH HOH . I 3 HOH C 8 708 75 HOH HOH . I 3 HOH C 9 709 76 HOH HOH . I 3 HOH C 10 710 77 HOH HOH . I 3 HOH C 11 711 78 HOH HOH . I 3 HOH C 12 712 79 HOH HOH . I 3 HOH C 13 713 80 HOH HOH . I 3 HOH C 14 714 81 HOH HOH . I 3 HOH C 15 715 91 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N MSE . . . D 2 -15.065 -10.441 46.226 1 39.33 ? N MSE 601 A 1 HETATM 2 C CA MSE . . . D 2 -14.415 -9.1 46.287 1 42.02 ? CA MSE 601 A 1 HETATM 3 C C MSE . . . D 2 -14.922 -8.25 45.168 1 41.7 ? C MSE 601 A 1 HETATM 4 O O MSE . . . D 2 -15.192 -8.704 44.056 1 49.27 ? O MSE 601 A 1 HETATM 5 O OXT MSE . . . D 2 -15.084 -7.05 45.333 1 45.99 ? OXT MSE 601 A 1 HETATM 6 C CB MSE . . . D 2 -12.881 -9.137 46.172 1 40.64 ? CB MSE 601 A 1 HETATM 7 C CG MSE . . . D 2 -12.217 -9.924 47.296 1 39.91 ? CG MSE 601 A 1 HETATM 8 SE SE MSE . . . D 2 -10.236 -9.907 47.122 1 51.57 ? SE MSE 601 A 1 HETATM 9 C CE MSE . . . D 2 -9.807 -10.659 48.914 1 37.27 ? CE MSE 601 A 1 # _model_server_stats.io_time_ms 87 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 9 #