data_4DLS # _model_server_result.job_id MA4REhhNoKIk-cvc26BzoA _model_server_result.datetime_utc '2024-11-22 20:43:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4dls # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":204}' # _entry.id 4DLS # _exptl.entry_id 4DLS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4DLS _cell.length_a 89.029 _cell.length_b 89.029 _cell.length_c 135.207 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4DLS _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA hexameric 6 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G 1 1 A,B,C,D,E,F,G 2 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_675 -y+1,x-y+2,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 154.202751 0 3 'crystal symmetry operation' 3_465 -x+y-1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -133.5435 77.101376 0 4 'crystal symmetry operation' 4_464 y-1,x+1,-z-1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 -133.5435 77.101376 -135.207 5 'crystal symmetry operation' 5_674 x-y+1,-y+2,-z-1 1 0 0 0 -1 0 0 0 -1 0 154.202751 -135.207 6 'crystal symmetry operation' 6_554 -x,-x+y,-z-1 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 -135.207 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 17 A SER 17 1_555 C MG MG . A MG 202 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc2 A OG SER 17 A SER 17 1_555 C MG MG . A MG 202 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc3 A O PHE 28 A PHE 28 1_555 B CA CA . A CA 201 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc4 A O PHE 28 A PHE 28 1_555 B CA CA . A CA 201 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.394 ? metalc ? metalc5 A OD1 ASP 30 A ASP 30 1_555 B CA CA . A CA 201 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.47 ? metalc ? metalc6 A OD2 ASP 30 A ASP 30 1_555 B CA CA . A CA 201 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.569 ? metalc ? metalc7 A OG1 THR 35 A THR 35 1_555 C MG MG . A MG 202 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.196 ? metalc ? metalc8 A OG1 THR 35 A THR 35 1_555 C MG MG . A MG 202 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc9 A O ARG 102 A ARG 102 1_555 E CA CA . A CA 204 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.503 ? metalc ? metalc10 A OD2 ASP 105 A ASP 105 1_555 E CA CA . A CA 204 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.543 ? metalc ? metalc11 A OD1 ASP 105 A ASP 105 1_555 E CA CA . A CA 204 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.959 ? metalc ? metalc12 B CA CA . A CA 201 1_555 G O HOH . A HOH 326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? metalc ? metalc13 B CA CA . A CA 201 1_555 G O HOH . A HOH 352 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? metalc ? metalc14 C MG MG . A MG 202 1_555 F O2G GNP . A GNP 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc15 C MG MG . A MG 202 1_555 F O2B GNP . A GNP 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc16 C MG MG . A MG 202 1_555 G O HOH . A HOH 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc17 C MG MG . A MG 202 1_555 G O HOH . A HOH 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc18 D MG MG . A MG 203 1_555 G O HOH . A HOH 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? metalc ? metalc19 D MG MG . A MG 203 1_555 G O HOH . A HOH 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? metalc ? metalc20 D MG MG . A MG 203 1_555 G O HOH . A HOH 397 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.956 ? metalc ? metalc21 E CA CA . A CA 204 1_555 G O HOH . A HOH 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.692 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4DLS _atom_sites.fract_transf_matrix[1][1] 0.011232 _atom_sites.fract_transf_matrix[1][2] 0.006485 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01297 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007396 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 201 202 CA CA . C 3 MG A 1 202 203 MG MG . D 3 MG A 1 203 204 MG MG . E 2 CA A 1 204 205 CA CA . F 4 GNP A 1 205 201 GNP GNP . G 5 HOH A 1 301 321 HOH HOH . G 5 HOH A 2 302 356 HOH HOH . G 5 HOH A 3 303 387 HOH HOH . G 5 HOH A 4 304 399 HOH HOH . G 5 HOH A 5 305 411 HOH HOH . G 5 HOH A 6 306 437 HOH HOH . G 5 HOH A 7 307 485 HOH HOH . G 5 HOH A 8 308 500 HOH HOH . G 5 HOH A 9 309 1000 HOH HOH . G 5 HOH A 10 310 1001 HOH HOH . G 5 HOH A 11 311 1002 HOH HOH . G 5 HOH A 12 312 175 HOH HOH . G 5 HOH A 13 313 1004 HOH HOH . G 5 HOH A 14 314 1005 HOH HOH . G 5 HOH A 15 315 1006 HOH HOH . G 5 HOH A 16 316 1007 HOH HOH . G 5 HOH A 17 317 1008 HOH HOH . G 5 HOH A 18 318 1009 HOH HOH . G 5 HOH A 19 319 1010 HOH HOH . G 5 HOH A 20 320 1011 HOH HOH . G 5 HOH A 21 321 1012 HOH HOH . G 5 HOH A 22 322 1013 HOH HOH . G 5 HOH A 23 323 1014 HOH HOH . G 5 HOH A 24 324 1015 HOH HOH . G 5 HOH A 25 325 1016 HOH HOH . G 5 HOH A 26 326 1017 HOH HOH . G 5 HOH A 27 327 1018 HOH HOH . G 5 HOH A 28 328 1019 HOH HOH . G 5 HOH A 29 329 1020 HOH HOH . G 5 HOH A 30 330 1021 HOH HOH . G 5 HOH A 31 331 1022 HOH HOH . G 5 HOH A 32 332 1023 HOH HOH . G 5 HOH A 33 333 1024 HOH HOH . G 5 HOH A 34 334 1025 HOH HOH . G 5 HOH A 35 335 1026 HOH HOH . G 5 HOH A 36 336 1027 HOH HOH . G 5 HOH A 37 337 1028 HOH HOH . G 5 HOH A 38 338 1029 HOH HOH . G 5 HOH A 39 339 1030 HOH HOH . G 5 HOH A 40 340 1031 HOH HOH . G 5 HOH A 41 341 1032 HOH HOH . G 5 HOH A 42 342 1033 HOH HOH . G 5 HOH A 43 343 1034 HOH HOH . G 5 HOH A 44 344 1035 HOH HOH . G 5 HOH A 45 345 1036 HOH HOH . G 5 HOH A 46 346 1037 HOH HOH . G 5 HOH A 47 347 1038 HOH HOH . G 5 HOH A 48 348 1039 HOH HOH . G 5 HOH A 49 349 1040 HOH HOH . G 5 HOH A 50 350 1041 HOH HOH . G 5 HOH A 51 351 1042 HOH HOH . G 5 HOH A 52 352 1043 HOH HOH . G 5 HOH A 53 353 1044 HOH HOH . G 5 HOH A 54 354 1045 HOH HOH . G 5 HOH A 55 355 1046 HOH HOH . G 5 HOH A 56 356 1047 HOH HOH . G 5 HOH A 57 357 1048 HOH HOH . G 5 HOH A 58 358 1049 HOH HOH . G 5 HOH A 59 359 1050 HOH HOH . G 5 HOH A 60 360 1051 HOH HOH . G 5 HOH A 61 361 1052 HOH HOH . G 5 HOH A 62 362 1053 HOH HOH . G 5 HOH A 63 363 1054 HOH HOH . G 5 HOH A 64 364 1055 HOH HOH . G 5 HOH A 65 365 1056 HOH HOH . G 5 HOH A 66 366 1057 HOH HOH . G 5 HOH A 67 367 1058 HOH HOH . G 5 HOH A 68 368 1059 HOH HOH . G 5 HOH A 69 369 1060 HOH HOH . G 5 HOH A 70 370 1061 HOH HOH . G 5 HOH A 71 371 1062 HOH HOH . G 5 HOH A 72 372 1063 HOH HOH . G 5 HOH A 73 373 1064 HOH HOH . G 5 HOH A 74 374 1065 HOH HOH . G 5 HOH A 75 375 1066 HOH HOH . G 5 HOH A 76 376 1067 HOH HOH . G 5 HOH A 77 377 1068 HOH HOH . G 5 HOH A 78 378 1069 HOH HOH . G 5 HOH A 79 379 1070 HOH HOH . G 5 HOH A 80 380 1071 HOH HOH . G 5 HOH A 81 381 1072 HOH HOH . G 5 HOH A 82 382 1073 HOH HOH . G 5 HOH A 83 383 1074 HOH HOH . G 5 HOH A 84 384 1075 HOH HOH . G 5 HOH A 85 385 1076 HOH HOH . G 5 HOH A 86 386 1077 HOH HOH . G 5 HOH A 87 387 1078 HOH HOH . G 5 HOH A 88 388 1079 HOH HOH . G 5 HOH A 89 389 1080 HOH HOH . G 5 HOH A 90 390 1081 HOH HOH . G 5 HOH A 91 391 1082 HOH HOH . G 5 HOH A 92 392 1083 HOH HOH . G 5 HOH A 93 393 1084 HOH HOH . G 5 HOH A 94 394 1085 HOH HOH . G 5 HOH A 95 395 1086 HOH HOH . G 5 HOH A 96 396 1087 HOH HOH . G 5 HOH A 97 397 1088 HOH HOH . G 5 HOH A 98 398 1089 HOH HOH . G 5 HOH A 99 399 1090 HOH HOH . G 5 HOH A 100 400 1091 HOH HOH . G 5 HOH A 101 401 1092 HOH HOH . G 5 HOH A 102 402 1093 HOH HOH . G 5 HOH A 103 403 1094 HOH HOH . G 5 HOH A 104 404 1095 HOH HOH . G 5 HOH A 105 405 1096 HOH HOH . G 5 HOH A 106 406 1097 HOH HOH . G 5 HOH A 107 407 1098 HOH HOH . G 5 HOH A 108 408 1099 HOH HOH . G 5 HOH A 109 409 1100 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 2 _atom_site.Cartn_x -29.168 _atom_site.Cartn_y 50.52 _atom_site.Cartn_z -67.604 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 57.3 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 204 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #