data_4DLT # _model_server_result.job_id N2AJmnLlEwvW-LfyswsRMg _model_server_result.datetime_utc '2024-11-22 20:35:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4dlt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 4DLT # _exptl.entry_id 4DLT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4DLT _cell.length_a 88.704 _cell.length_b 88.704 _cell.length_c 134.36 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4DLT _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA trimeric 3 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 1 A,B,C,D,E,F,G,H 2 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 44.352 76.819917 0 3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -44.352 76.819917 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 17 A SER 17 1_555 D MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? metalc ? metalc2 A O PHE 28 A PHE 28 1_555 C CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc3 A OD1 ASP 30 A ASP 30 1_555 C CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc4 A OG1 THR 35 A THR 35 1_555 D MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? metalc ? metalc5 A O ASP 107 A ASP 107 1_555 E CA CA . A CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.611 ? metalc ? metalc6 A O TYR 137 A TYR 137 1_555 E CA CA . A CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? metalc ? metalc7 B O2B GNP . A GNP 201 1_555 D MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc8 B O2G GNP . A GNP 201 1_555 D MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc9 C CA CA . A CA 202 1_555 H O HOH . A HOH 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.477 ? metalc ? metalc10 C CA CA . A CA 202 1_555 H O HOH . A HOH 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.565 ? metalc ? metalc11 D MG MG . A MG 203 1_555 H O HOH . A HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc12 D MG MG . A MG 203 1_555 H O HOH . A HOH 398 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc13 E CA CA . A CA 204 1_555 G OXT ACT . A ACT 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.593 ? metalc ? metalc14 E CA CA . A CA 204 1_555 G O ACT . A ACT 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.788 ? metalc ? metalc15 E CA CA . A CA 204 1_555 H O HOH . A HOH 366 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? metalc ? metalc16 E CA CA . A CA 204 1_555 H O HOH . A HOH 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.639 ? metalc ? metalc17 F MG MG . A MG 205 1_555 H O HOH . A HOH 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.623 ? metalc ? metalc18 F MG MG . A MG 205 1_555 H O HOH . A HOH 353 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? metalc ? metalc19 F MG MG . A MG 205 1_555 H O HOH . A HOH 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.861 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4DLT _atom_sites.fract_transf_matrix[1][1] 0.011273 _atom_sites.fract_transf_matrix[1][2] 0.006509 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013017 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007443 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GNP A 1 201 201 GNP GNP . C 3 CA A 1 202 202 CA CA . D 4 MG A 1 203 203 MG MG . E 3 CA A 1 204 204 CA CA . F 4 MG A 1 205 205 MG MG . G 5 ACT A 1 206 206 ACT ACT . H 6 HOH A 1 301 301 HOH HOH . H 6 HOH A 2 302 302 HOH HOH . H 6 HOH A 3 303 304 HOH HOH . H 6 HOH A 4 304 306 HOH HOH . H 6 HOH A 5 305 307 HOH HOH . H 6 HOH A 6 306 308 HOH HOH . H 6 HOH A 7 307 309 HOH HOH . H 6 HOH A 8 308 310 HOH HOH . H 6 HOH A 9 309 311 HOH HOH . H 6 HOH A 10 310 312 HOH HOH . H 6 HOH A 11 311 313 HOH HOH . H 6 HOH A 12 312 314 HOH HOH . H 6 HOH A 13 313 315 HOH HOH . H 6 HOH A 14 314 316 HOH HOH . H 6 HOH A 15 315 317 HOH HOH . H 6 HOH A 16 316 318 HOH HOH . H 6 HOH A 17 317 320 HOH HOH . H 6 HOH A 18 318 321 HOH HOH . H 6 HOH A 19 319 322 HOH HOH . H 6 HOH A 20 320 323 HOH HOH . H 6 HOH A 21 321 324 HOH HOH . H 6 HOH A 22 322 326 HOH HOH . H 6 HOH A 23 323 327 HOH HOH . H 6 HOH A 24 324 328 HOH HOH . H 6 HOH A 25 325 329 HOH HOH . H 6 HOH A 26 326 331 HOH HOH . H 6 HOH A 27 327 332 HOH HOH . H 6 HOH A 28 328 333 HOH HOH . H 6 HOH A 29 329 334 HOH HOH . H 6 HOH A 30 330 336 HOH HOH . H 6 HOH A 31 331 337 HOH HOH . H 6 HOH A 32 332 338 HOH HOH . H 6 HOH A 33 333 339 HOH HOH . H 6 HOH A 34 334 340 HOH HOH . H 6 HOH A 35 335 341 HOH HOH . H 6 HOH A 36 336 342 HOH HOH . H 6 HOH A 37 337 343 HOH HOH . H 6 HOH A 38 338 344 HOH HOH . H 6 HOH A 39 339 346 HOH HOH . H 6 HOH A 40 340 347 HOH HOH . H 6 HOH A 41 341 348 HOH HOH . H 6 HOH A 42 342 349 HOH HOH . H 6 HOH A 43 343 350 HOH HOH . H 6 HOH A 44 344 351 HOH HOH . H 6 HOH A 45 345 352 HOH HOH . H 6 HOH A 46 346 353 HOH HOH . H 6 HOH A 47 347 354 HOH HOH . H 6 HOH A 48 348 355 HOH HOH . H 6 HOH A 49 349 357 HOH HOH . H 6 HOH A 50 350 360 HOH HOH . H 6 HOH A 51 351 361 HOH HOH . H 6 HOH A 52 352 363 HOH HOH . H 6 HOH A 53 353 364 HOH HOH . H 6 HOH A 54 354 365 HOH HOH . H 6 HOH A 55 355 366 HOH HOH . H 6 HOH A 56 356 368 HOH HOH . H 6 HOH A 57 357 369 HOH HOH . H 6 HOH A 58 358 370 HOH HOH . H 6 HOH A 59 359 375 HOH HOH . H 6 HOH A 60 360 376 HOH HOH . H 6 HOH A 61 361 378 HOH HOH . H 6 HOH A 62 362 381 HOH HOH . H 6 HOH A 63 363 382 HOH HOH . H 6 HOH A 64 364 388 HOH HOH . H 6 HOH A 65 365 390 HOH HOH . H 6 HOH A 66 366 394 HOH HOH . H 6 HOH A 67 367 395 HOH HOH . H 6 HOH A 68 368 403 HOH HOH . H 6 HOH A 69 369 406 HOH HOH . H 6 HOH A 70 370 407 HOH HOH . H 6 HOH A 71 371 409 HOH HOH . H 6 HOH A 72 372 410 HOH HOH . H 6 HOH A 73 373 412 HOH HOH . H 6 HOH A 74 374 413 HOH HOH . H 6 HOH A 75 375 414 HOH HOH . H 6 HOH A 76 376 416 HOH HOH . H 6 HOH A 77 377 423 HOH HOH . H 6 HOH A 78 378 429 HOH HOH . H 6 HOH A 79 379 430 HOH HOH . H 6 HOH A 80 380 431 HOH HOH . H 6 HOH A 81 381 434 HOH HOH . H 6 HOH A 82 382 439 HOH HOH . H 6 HOH A 83 383 442 HOH HOH . H 6 HOH A 84 384 450 HOH HOH . H 6 HOH A 85 385 452 HOH HOH . H 6 HOH A 86 386 460 HOH HOH . H 6 HOH A 87 387 463 HOH HOH . H 6 HOH A 88 388 464 HOH HOH . H 6 HOH A 89 389 468 HOH HOH . H 6 HOH A 90 390 472 HOH HOH . H 6 HOH A 91 391 474 HOH HOH . H 6 HOH A 92 392 476 HOH HOH . H 6 HOH A 93 393 507 HOH HOH . H 6 HOH A 94 394 510 HOH HOH . H 6 HOH A 95 395 513 HOH HOH . H 6 HOH A 96 396 175 HOH HOH . H 6 HOH A 97 397 543 HOH HOH . H 6 HOH A 98 398 544 HOH HOH . H 6 HOH A 99 399 1101 HOH HOH . H 6 HOH A 100 400 1102 HOH HOH . H 6 HOH A 101 401 1103 HOH HOH . H 6 HOH A 102 402 1104 HOH HOH . H 6 HOH A 103 403 1105 HOH HOH . H 6 HOH A 104 404 1106 HOH HOH . H 6 HOH A 105 405 1107 HOH HOH . H 6 HOH A 106 406 1108 HOH HOH . H 6 HOH A 107 407 1109 HOH HOH . H 6 HOH A 108 408 1110 HOH HOH . H 6 HOH A 109 409 1111 HOH HOH . H 6 HOH A 110 410 1112 HOH HOH . H 6 HOH A 111 411 1113 HOH HOH . H 6 HOH A 112 412 1114 HOH HOH . H 6 HOH A 113 413 1115 HOH HOH . H 6 HOH A 114 414 1116 HOH HOH . H 6 HOH A 115 415 1117 HOH HOH . H 6 HOH A 116 416 1118 HOH HOH . H 6 HOH A 117 417 1119 HOH HOH . H 6 HOH A 118 418 1120 HOH HOH . H 6 HOH A 119 419 1121 HOH HOH . H 6 HOH A 120 420 1122 HOH HOH . H 6 HOH A 121 421 1123 HOH HOH . H 6 HOH A 122 422 1124 HOH HOH . H 6 HOH A 123 423 1125 HOH HOH . H 6 HOH A 124 424 1126 HOH HOH . H 6 HOH A 125 425 1127 HOH HOH . H 6 HOH A 126 426 1128 HOH HOH . H 6 HOH A 127 427 1129 HOH HOH . H 6 HOH A 128 428 1130 HOH HOH . H 6 HOH A 129 429 1131 HOH HOH . H 6 HOH A 130 430 1132 HOH HOH . H 6 HOH A 131 431 1133 HOH HOH . H 6 HOH A 132 432 1134 HOH HOH . H 6 HOH A 133 433 1135 HOH HOH . H 6 HOH A 134 434 1136 HOH HOH . H 6 HOH A 135 435 1137 HOH HOH . H 6 HOH A 136 436 1138 HOH HOH . H 6 HOH A 137 437 1139 HOH HOH . H 6 HOH A 138 438 1140 HOH HOH . H 6 HOH A 139 439 1141 HOH HOH . H 6 HOH A 140 440 1142 HOH HOH . H 6 HOH A 141 441 1143 HOH HOH . H 6 HOH A 142 442 1144 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x -4.351 _atom_site.Cartn_y 79.191 _atom_site.Cartn_z -72.256 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 24.92 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 202 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #