data_4DLU # _model_server_result.job_id x772xH-m3WrIGDqtevCQJg _model_server_result.datetime_utc '2024-11-02 08:35:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4dlu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 4DLU # _exptl.entry_id 4DLU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4DLU _cell.length_a 88.822 _cell.length_b 88.822 _cell.length_c 134.779 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4DLU _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA trimeric 3 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 1 A,B,C,D,E,F,G,H 2 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 44.411 76.922108 0 3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -44.411 76.922108 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 17 A SER 17 1_555 D MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc2 A O PHE 28 A PHE 28 1_555 C CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc3 A OD1 ASP 30 A ASP 30 1_555 C CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? metalc ? metalc4 A OG1 THR 35 A THR 35 1_555 D MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? metalc ? metalc5 A O ASP 107 A ASP 107 1_555 E CA CA . A CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc6 A O TYR 137 A TYR 137 1_555 E CA CA . A CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? metalc ? metalc7 B O2G GNP . A GNP 201 1_555 D MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc8 B O2B GNP . A GNP 201 1_555 D MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc9 C CA CA . A CA 202 1_555 H O HOH . A HOH 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? metalc ? metalc10 C CA CA . A CA 202 1_555 H O HOH . A HOH 419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.593 ? metalc ? metalc11 D MG MG . A MG 203 1_555 H O HOH . A HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? metalc ? metalc12 D MG MG . A MG 203 1_555 H O HOH . A HOH 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? metalc ? metalc13 E CA CA . A CA 204 1_555 G OXT ACT . A ACT 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.571 ? metalc ? metalc14 E CA CA . A CA 204 1_555 G O ACT . A ACT 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.661 ? metalc ? metalc15 E CA CA . A CA 204 1_555 H O HOH . A HOH 365 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? metalc ? metalc16 E CA CA . A CA 204 1_555 H O HOH . A HOH 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.696 ? metalc ? metalc17 E CA CA . A CA 204 1_555 H O HOH . A HOH 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.557 ? metalc ? metalc18 F MG MG . A MG 205 1_555 H O HOH . A HOH 335 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.611 ? metalc ? metalc19 F MG MG . A MG 205 1_555 H O HOH . A HOH 351 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4DLU _atom_sites.fract_transf_matrix[1][1] 0.011258 _atom_sites.fract_transf_matrix[1][2] 0.0065 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00742 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GNP A 1 201 201 GNP GNP . C 3 CA A 1 202 202 CA CA . D 4 MG A 1 203 203 MG MG . E 3 CA A 1 204 204 CA CA . F 4 MG A 1 205 205 MG MG . G 5 ACT A 1 206 206 ACT ACT . H 6 HOH A 1 301 301 HOH HOH . H 6 HOH A 2 302 302 HOH HOH . H 6 HOH A 3 303 304 HOH HOH . H 6 HOH A 4 304 306 HOH HOH . H 6 HOH A 5 305 307 HOH HOH . H 6 HOH A 6 306 308 HOH HOH . H 6 HOH A 7 307 309 HOH HOH . H 6 HOH A 8 308 310 HOH HOH . H 6 HOH A 9 309 311 HOH HOH . H 6 HOH A 10 310 312 HOH HOH . H 6 HOH A 11 311 313 HOH HOH . H 6 HOH A 12 312 314 HOH HOH . H 6 HOH A 13 313 315 HOH HOH . H 6 HOH A 14 314 316 HOH HOH . H 6 HOH A 15 315 317 HOH HOH . H 6 HOH A 16 316 318 HOH HOH . H 6 HOH A 17 317 320 HOH HOH . H 6 HOH A 18 318 321 HOH HOH . H 6 HOH A 19 319 322 HOH HOH . H 6 HOH A 20 320 323 HOH HOH . H 6 HOH A 21 321 324 HOH HOH . H 6 HOH A 22 322 326 HOH HOH . H 6 HOH A 23 323 327 HOH HOH . H 6 HOH A 24 324 328 HOH HOH . H 6 HOH A 25 325 329 HOH HOH . H 6 HOH A 26 326 331 HOH HOH . H 6 HOH A 27 327 332 HOH HOH . H 6 HOH A 28 328 333 HOH HOH . H 6 HOH A 29 329 334 HOH HOH . H 6 HOH A 30 330 336 HOH HOH . H 6 HOH A 31 331 337 HOH HOH . H 6 HOH A 32 332 338 HOH HOH . H 6 HOH A 33 333 339 HOH HOH . H 6 HOH A 34 334 341 HOH HOH . H 6 HOH A 35 335 342 HOH HOH . H 6 HOH A 36 336 343 HOH HOH . H 6 HOH A 37 337 344 HOH HOH . H 6 HOH A 38 338 346 HOH HOH . H 6 HOH A 39 339 347 HOH HOH . H 6 HOH A 40 340 348 HOH HOH . H 6 HOH A 41 341 349 HOH HOH . H 6 HOH A 42 342 350 HOH HOH . H 6 HOH A 43 343 351 HOH HOH . H 6 HOH A 44 344 352 HOH HOH . H 6 HOH A 45 345 353 HOH HOH . H 6 HOH A 46 346 354 HOH HOH . H 6 HOH A 47 347 355 HOH HOH . H 6 HOH A 48 348 357 HOH HOH . H 6 HOH A 49 349 361 HOH HOH . H 6 HOH A 50 350 363 HOH HOH . H 6 HOH A 51 351 364 HOH HOH . H 6 HOH A 52 352 365 HOH HOH . H 6 HOH A 53 353 366 HOH HOH . H 6 HOH A 54 354 368 HOH HOH . H 6 HOH A 55 355 370 HOH HOH . H 6 HOH A 56 356 375 HOH HOH . H 6 HOH A 57 357 376 HOH HOH . H 6 HOH A 58 358 377 HOH HOH . H 6 HOH A 59 359 378 HOH HOH . H 6 HOH A 60 360 379 HOH HOH . H 6 HOH A 61 361 381 HOH HOH . H 6 HOH A 62 362 383 HOH HOH . H 6 HOH A 63 363 388 HOH HOH . H 6 HOH A 64 364 390 HOH HOH . H 6 HOH A 65 365 394 HOH HOH . H 6 HOH A 66 366 395 HOH HOH . H 6 HOH A 67 367 396 HOH HOH . H 6 HOH A 68 368 398 HOH HOH . H 6 HOH A 69 369 399 HOH HOH . H 6 HOH A 70 370 401 HOH HOH . H 6 HOH A 71 371 403 HOH HOH . H 6 HOH A 72 372 404 HOH HOH . H 6 HOH A 73 373 405 HOH HOH . H 6 HOH A 74 374 407 HOH HOH . H 6 HOH A 75 375 410 HOH HOH . H 6 HOH A 76 376 412 HOH HOH . H 6 HOH A 77 377 414 HOH HOH . H 6 HOH A 78 378 420 HOH HOH . H 6 HOH A 79 379 421 HOH HOH . H 6 HOH A 80 380 423 HOH HOH . H 6 HOH A 81 381 426 HOH HOH . H 6 HOH A 82 382 428 HOH HOH . H 6 HOH A 83 383 430 HOH HOH . H 6 HOH A 84 384 434 HOH HOH . H 6 HOH A 85 385 436 HOH HOH . H 6 HOH A 86 386 439 HOH HOH . H 6 HOH A 87 387 441 HOH HOH . H 6 HOH A 88 388 442 HOH HOH . H 6 HOH A 89 389 450 HOH HOH . H 6 HOH A 90 390 452 HOH HOH . H 6 HOH A 91 391 460 HOH HOH . H 6 HOH A 92 392 463 HOH HOH . H 6 HOH A 93 393 464 HOH HOH . H 6 HOH A 94 394 468 HOH HOH . H 6 HOH A 95 395 469 HOH HOH . H 6 HOH A 96 396 472 HOH HOH . H 6 HOH A 97 397 474 HOH HOH . H 6 HOH A 98 398 476 HOH HOH . H 6 HOH A 99 399 481 HOH HOH . H 6 HOH A 100 400 500 HOH HOH . H 6 HOH A 101 401 502 HOH HOH . H 6 HOH A 102 402 503 HOH HOH . H 6 HOH A 103 403 505 HOH HOH . H 6 HOH A 104 404 507 HOH HOH . H 6 HOH A 105 405 510 HOH HOH . H 6 HOH A 106 406 517 HOH HOH . H 6 HOH A 107 407 533 HOH HOH . H 6 HOH A 108 408 539 HOH HOH . H 6 HOH A 109 409 175 HOH HOH . H 6 HOH A 110 410 543 HOH HOH . H 6 HOH A 111 411 544 HOH HOH . H 6 HOH A 112 412 1145 HOH HOH . H 6 HOH A 113 413 1146 HOH HOH . H 6 HOH A 114 414 189 HOH HOH . H 6 HOH A 115 415 1148 HOH HOH . H 6 HOH A 116 416 1149 HOH HOH . H 6 HOH A 117 417 1150 HOH HOH . H 6 HOH A 118 418 1151 HOH HOH . H 6 HOH A 119 419 1152 HOH HOH . H 6 HOH A 120 420 1153 HOH HOH . H 6 HOH A 121 421 1154 HOH HOH . H 6 HOH A 122 422 1155 HOH HOH . H 6 HOH A 123 423 1156 HOH HOH . H 6 HOH A 124 424 1157 HOH HOH . H 6 HOH A 125 425 1158 HOH HOH . H 6 HOH A 126 426 1159 HOH HOH . H 6 HOH A 127 427 1160 HOH HOH . H 6 HOH A 128 428 1161 HOH HOH . H 6 HOH A 129 429 1162 HOH HOH . H 6 HOH A 130 430 1163 HOH HOH . H 6 HOH A 131 431 1164 HOH HOH . H 6 HOH A 132 432 1165 HOH HOH . H 6 HOH A 133 433 1166 HOH HOH . H 6 HOH A 134 434 1167 HOH HOH . H 6 HOH A 135 435 1168 HOH HOH . H 6 HOH A 136 436 1169 HOH HOH . H 6 HOH A 137 437 1170 HOH HOH . H 6 HOH A 138 438 1171 HOH HOH . H 6 HOH A 139 439 1172 HOH HOH . H 6 HOH A 140 440 1173 HOH HOH . H 6 HOH A 141 441 1174 HOH HOH . H 6 HOH A 142 442 1175 HOH HOH . H 6 HOH A 143 443 1176 HOH HOH . H 6 HOH A 144 444 1177 HOH HOH . H 6 HOH A 145 445 1178 HOH HOH . H 6 HOH A 146 446 1179 HOH HOH . H 6 HOH A 147 447 1180 HOH HOH . H 6 HOH A 148 448 1181 HOH HOH . H 6 HOH A 149 449 1182 HOH HOH . H 6 HOH A 150 450 1183 HOH HOH . H 6 HOH A 151 451 1184 HOH HOH . H 6 HOH A 152 452 1185 HOH HOH . H 6 HOH A 153 453 1186 HOH HOH . H 6 HOH A 154 454 1187 HOH HOH . H 6 HOH A 155 455 1188 HOH HOH . H 6 HOH A 156 456 1189 HOH HOH . H 6 HOH A 157 457 1190 HOH HOH . H 6 HOH A 158 458 1191 HOH HOH . H 6 HOH A 159 459 1192 HOH HOH . H 6 HOH A 160 460 1193 HOH HOH . H 6 HOH A 161 461 1194 HOH HOH . H 6 HOH A 162 462 1195 HOH HOH . H 6 HOH A 163 463 1196 HOH HOH . H 6 HOH A 164 464 1197 HOH HOH . H 6 HOH A 165 465 1198 HOH HOH . H 6 HOH A 166 466 1199 HOH HOH . H 6 HOH A 167 467 1200 HOH HOH . H 6 HOH A 168 468 1201 HOH HOH . H 6 HOH A 169 469 1202 HOH HOH . H 6 HOH A 170 470 1203 HOH HOH . H 6 HOH A 171 471 1204 HOH HOH . H 6 HOH A 172 472 1205 HOH HOH . H 6 HOH A 173 473 1206 HOH HOH . H 6 HOH A 174 474 1207 HOH HOH . H 6 HOH A 175 475 1208 HOH HOH . H 6 HOH A 176 476 1209 HOH HOH . H 6 HOH A 177 477 1210 HOH HOH . H 6 HOH A 178 478 1211 HOH HOH . H 6 HOH A 179 479 1212 HOH HOH . H 6 HOH A 180 480 1213 HOH HOH . H 6 HOH A 181 481 1214 HOH HOH . H 6 HOH A 182 482 1215 HOH HOH . H 6 HOH A 183 483 1216 HOH HOH . H 6 HOH A 184 484 1217 HOH HOH . H 6 HOH A 185 485 1218 HOH HOH . H 6 HOH A 186 486 1219 HOH HOH . H 6 HOH A 187 487 1220 HOH HOH . H 6 HOH A 188 488 1221 HOH HOH . H 6 HOH A 189 489 1222 HOH HOH . H 6 HOH A 190 490 1223 HOH HOH . H 6 HOH A 191 491 1224 HOH HOH . H 6 HOH A 192 492 1225 HOH HOH . H 6 HOH A 193 493 1226 HOH HOH . H 6 HOH A 194 494 1227 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x -4.255 _atom_site.Cartn_y 79.36 _atom_site.Cartn_z -72.411 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 20.57 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 202 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 1 #