data_4DLV # _model_server_result.job_id 4f6RiZKW7sJ7gw2jOLIB8g _model_server_result.datetime_utc '2024-11-22 15:13:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4dlv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":206}' # _entry.id 4DLV # _exptl.entry_id 4DLV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4DLV _cell.length_a 88.822 _cell.length_b 88.822 _cell.length_c 134.053 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4DLV _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA hexameric 6 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 1 A,B,C,D,E,F,G,H 2 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_675 -y+1,x-y+2,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 153.844217 0 3 'crystal symmetry operation' 3_465 -x+y-1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -133.233 76.922108 0 4 'crystal symmetry operation' 4_464 y-1,x+1,-z-1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 -133.233 76.922108 -134.053 5 'crystal symmetry operation' 5_674 x-y+1,-y+2,-z-1 1 0 0 0 -1 0 0 0 -1 0 153.844217 -134.053 6 'crystal symmetry operation' 6_554 -x,-x+y,-z-1 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 -134.053 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 17 A SER 17 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc2 A O PHE 28 A PHE 28 1_555 B CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc3 A OD2 ASP 30 A ASP 30 1_555 B CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? metalc ? metalc4 A OG1 THR 35 A THR 35 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? metalc ? metalc5 A O ARG 102 A ARG 102 1_555 G MG MG . A MG 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc6 A OD1 ASP 105 A ASP 105 1_555 G MG MG . A MG 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.676 ? metalc ? metalc7 A OD2 ASP 105 A ASP 105 1_555 G MG MG . A MG 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.813 ? metalc ? metalc8 B CA CA . A CA 201 1_555 H O HOH . A HOH 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.584 ? metalc ? metalc9 B CA CA . A CA 201 1_555 H O HOH . A HOH 431 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.494 ? metalc ? metalc10 C MG MG . A MG 202 1_555 E O2G GNP . A GNP 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc11 C MG MG . A MG 202 1_555 E O2B GNP . A GNP 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc12 C MG MG . A MG 202 1_555 H O HOH . A HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? metalc ? metalc13 C MG MG . A MG 202 1_555 H O HOH . A HOH 428 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc14 D MG MG . A MG 203 1_555 H O HOH . A HOH 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.619 ? metalc ? metalc15 D MG MG . A MG 203 1_555 H O HOH . A HOH 358 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.554 ? metalc ? metalc16 G MG MG . A MG 206 1_555 H O HOH . A HOH 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.7 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4DLV _atom_sites.fract_transf_matrix[1][1] 0.011258 _atom_sites.fract_transf_matrix[1][2] 0.0065 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00746 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 201 202 CA CA . C 3 MG A 1 202 203 MG MG . D 3 MG A 1 203 204 MG MG . E 4 GNP A 1 204 201 GNP GNP . F 5 DTT A 1 205 206 DTT DTT . G 3 MG A 1 206 205 MG MG . H 6 HOH A 1 301 301 HOH HOH . H 6 HOH A 2 302 302 HOH HOH . H 6 HOH A 3 303 304 HOH HOH . H 6 HOH A 4 304 306 HOH HOH . H 6 HOH A 5 305 307 HOH HOH . H 6 HOH A 6 306 308 HOH HOH . H 6 HOH A 7 307 309 HOH HOH . H 6 HOH A 8 308 310 HOH HOH . H 6 HOH A 9 309 311 HOH HOH . H 6 HOH A 10 310 312 HOH HOH . H 6 HOH A 11 311 313 HOH HOH . H 6 HOH A 12 312 314 HOH HOH . H 6 HOH A 13 313 315 HOH HOH . H 6 HOH A 14 314 316 HOH HOH . H 6 HOH A 15 315 317 HOH HOH . H 6 HOH A 16 316 318 HOH HOH . H 6 HOH A 17 317 320 HOH HOH . H 6 HOH A 18 318 321 HOH HOH . H 6 HOH A 19 319 322 HOH HOH . H 6 HOH A 20 320 323 HOH HOH . H 6 HOH A 21 321 324 HOH HOH . H 6 HOH A 22 322 325 HOH HOH . H 6 HOH A 23 323 326 HOH HOH . H 6 HOH A 24 324 327 HOH HOH . H 6 HOH A 25 325 328 HOH HOH . H 6 HOH A 26 326 329 HOH HOH . H 6 HOH A 27 327 330 HOH HOH . H 6 HOH A 28 328 331 HOH HOH . H 6 HOH A 29 329 332 HOH HOH . H 6 HOH A 30 330 333 HOH HOH . H 6 HOH A 31 331 334 HOH HOH . H 6 HOH A 32 332 336 HOH HOH . H 6 HOH A 33 333 337 HOH HOH . H 6 HOH A 34 334 338 HOH HOH . H 6 HOH A 35 335 339 HOH HOH . H 6 HOH A 36 336 341 HOH HOH . H 6 HOH A 37 337 342 HOH HOH . H 6 HOH A 38 338 343 HOH HOH . H 6 HOH A 39 339 344 HOH HOH . H 6 HOH A 40 340 345 HOH HOH . H 6 HOH A 41 341 346 HOH HOH . H 6 HOH A 42 342 347 HOH HOH . H 6 HOH A 43 343 348 HOH HOH . H 6 HOH A 44 344 349 HOH HOH . H 6 HOH A 45 345 350 HOH HOH . H 6 HOH A 46 346 351 HOH HOH . H 6 HOH A 47 347 352 HOH HOH . H 6 HOH A 48 348 353 HOH HOH . H 6 HOH A 49 349 354 HOH HOH . H 6 HOH A 50 350 355 HOH HOH . H 6 HOH A 51 351 356 HOH HOH . H 6 HOH A 52 352 357 HOH HOH . H 6 HOH A 53 353 358 HOH HOH . H 6 HOH A 54 354 359 HOH HOH . H 6 HOH A 55 355 360 HOH HOH . H 6 HOH A 56 356 361 HOH HOH . H 6 HOH A 57 357 363 HOH HOH . H 6 HOH A 58 358 364 HOH HOH . H 6 HOH A 59 359 365 HOH HOH . H 6 HOH A 60 360 366 HOH HOH . H 6 HOH A 61 361 368 HOH HOH . H 6 HOH A 62 362 369 HOH HOH . H 6 HOH A 63 363 370 HOH HOH . H 6 HOH A 64 364 371 HOH HOH . H 6 HOH A 65 365 372 HOH HOH . H 6 HOH A 66 366 373 HOH HOH . H 6 HOH A 67 367 374 HOH HOH . H 6 HOH A 68 368 375 HOH HOH . H 6 HOH A 69 369 376 HOH HOH . H 6 HOH A 70 370 377 HOH HOH . H 6 HOH A 71 371 378 HOH HOH . H 6 HOH A 72 372 379 HOH HOH . H 6 HOH A 73 373 382 HOH HOH . H 6 HOH A 74 374 383 HOH HOH . H 6 HOH A 75 375 384 HOH HOH . H 6 HOH A 76 376 388 HOH HOH . H 6 HOH A 77 377 389 HOH HOH . H 6 HOH A 78 378 390 HOH HOH . H 6 HOH A 79 379 392 HOH HOH . H 6 HOH A 80 380 393 HOH HOH . H 6 HOH A 81 381 395 HOH HOH . H 6 HOH A 82 382 397 HOH HOH . H 6 HOH A 83 383 398 HOH HOH . H 6 HOH A 84 384 399 HOH HOH . H 6 HOH A 85 385 401 HOH HOH . H 6 HOH A 86 386 403 HOH HOH . H 6 HOH A 87 387 405 HOH HOH . H 6 HOH A 88 388 406 HOH HOH . H 6 HOH A 89 389 407 HOH HOH . H 6 HOH A 90 390 408 HOH HOH . H 6 HOH A 91 391 409 HOH HOH . H 6 HOH A 92 392 410 HOH HOH . H 6 HOH A 93 393 412 HOH HOH . H 6 HOH A 94 394 413 HOH HOH . H 6 HOH A 95 395 414 HOH HOH . H 6 HOH A 96 396 418 HOH HOH . H 6 HOH A 97 397 420 HOH HOH . H 6 HOH A 98 398 423 HOH HOH . H 6 HOH A 99 399 424 HOH HOH . H 6 HOH A 100 400 425 HOH HOH . H 6 HOH A 101 401 427 HOH HOH . H 6 HOH A 102 402 428 HOH HOH . H 6 HOH A 103 403 430 HOH HOH . H 6 HOH A 104 404 436 HOH HOH . H 6 HOH A 105 405 442 HOH HOH . H 6 HOH A 106 406 445 HOH HOH . H 6 HOH A 107 407 449 HOH HOH . H 6 HOH A 108 408 450 HOH HOH . H 6 HOH A 109 409 451 HOH HOH . H 6 HOH A 110 410 452 HOH HOH . H 6 HOH A 111 411 453 HOH HOH . H 6 HOH A 112 412 462 HOH HOH . H 6 HOH A 113 413 463 HOH HOH . H 6 HOH A 114 414 470 HOH HOH . H 6 HOH A 115 415 474 HOH HOH . H 6 HOH A 116 416 476 HOH HOH . H 6 HOH A 117 417 477 HOH HOH . H 6 HOH A 118 418 481 HOH HOH . H 6 HOH A 119 419 493 HOH HOH . H 6 HOH A 120 420 495 HOH HOH . H 6 HOH A 121 421 503 HOH HOH . H 6 HOH A 122 422 508 HOH HOH . H 6 HOH A 123 423 519 HOH HOH . H 6 HOH A 124 424 524 HOH HOH . H 6 HOH A 125 425 175 HOH HOH . H 6 HOH A 126 426 542 HOH HOH . H 6 HOH A 127 427 543 HOH HOH . H 6 HOH A 128 428 544 HOH HOH . H 6 HOH A 129 429 545 HOH HOH . H 6 HOH A 130 430 1227 HOH HOH . H 6 HOH A 131 431 1228 HOH HOH . H 6 HOH A 132 432 1229 HOH HOH . H 6 HOH A 133 433 1230 HOH HOH . H 6 HOH A 134 434 1231 HOH HOH . H 6 HOH A 135 435 1232 HOH HOH . H 6 HOH A 136 436 1233 HOH HOH . H 6 HOH A 137 437 1234 HOH HOH . H 6 HOH A 138 438 1235 HOH HOH . H 6 HOH A 139 439 1236 HOH HOH . H 6 HOH A 140 440 1237 HOH HOH . H 6 HOH A 141 441 1238 HOH HOH . H 6 HOH A 142 442 1239 HOH HOH . H 6 HOH A 143 443 1240 HOH HOH . H 6 HOH A 144 444 1241 HOH HOH . H 6 HOH A 145 445 1242 HOH HOH . H 6 HOH A 146 446 1243 HOH HOH . H 6 HOH A 147 447 1244 HOH HOH . H 6 HOH A 148 448 1245 HOH HOH . H 6 HOH A 149 449 1246 HOH HOH . H 6 HOH A 150 450 1247 HOH HOH . H 6 HOH A 151 451 1248 HOH HOH . H 6 HOH A 152 452 1249 HOH HOH . H 6 HOH A 153 453 1250 HOH HOH . H 6 HOH A 154 454 1251 HOH HOH . H 6 HOH A 155 455 1252 HOH HOH . H 6 HOH A 156 456 1253 HOH HOH . H 6 HOH A 157 457 1254 HOH HOH . H 6 HOH A 158 458 1255 HOH HOH . H 6 HOH A 159 459 1256 HOH HOH . H 6 HOH A 160 460 1257 HOH HOH . H 6 HOH A 161 461 1258 HOH HOH . H 6 HOH A 162 462 1259 HOH HOH . H 6 HOH A 163 463 1260 HOH HOH . H 6 HOH A 164 464 1261 HOH HOH . H 6 HOH A 165 465 1262 HOH HOH . H 6 HOH A 166 466 1263 HOH HOH . H 6 HOH A 167 467 1264 HOH HOH . H 6 HOH A 168 468 1265 HOH HOH . H 6 HOH A 169 469 1266 HOH HOH . H 6 HOH A 170 470 1267 HOH HOH . H 6 HOH A 171 471 1268 HOH HOH . H 6 HOH A 172 472 1269 HOH HOH . H 6 HOH A 173 473 1270 HOH HOH . H 6 HOH A 174 474 1271 HOH HOH . H 6 HOH A 175 475 1272 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 3 _atom_site.Cartn_x -29.298 _atom_site.Cartn_y 50.745 _atom_site.Cartn_z -67.026 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 22.28 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 206 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #