data_4DLW # _model_server_result.job_id 6w60oMQhAvvfmR7Mc16uGA _model_server_result.datetime_utc '2024-11-22 19:32:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4dlw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 4DLW # _exptl.entry_id 4DLW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4DLW _cell.length_a 88.395 _cell.length_b 88.395 _cell.length_c 133.923 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4DLW _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA trimeric 3 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 1 A,B,C,D,E,F,G,H 2 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 44.1975 76.552316 0 3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -44.1975 76.552316 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 17 A SER 17 1_555 D MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? metalc ? metalc2 A O PHE 28 A PHE 28 1_555 C CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc3 A OD1 ASP 30 A ASP 30 1_555 C CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? metalc ? metalc4 A OG1 THR 35 A THR 35 1_555 D MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc5 A O ASP 107 A ASP 107 1_555 E CA CA . A CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.578 ? metalc ? metalc6 A O TYR 137 A TYR 137 1_555 E CA CA . A CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? metalc ? metalc7 B O2B GNP . A GNP 201 1_555 D MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc8 B O2G GNP . A GNP 201 1_555 D MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc9 C CA CA . A CA 202 1_555 H O HOH . A HOH 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? metalc ? metalc10 C CA CA . A CA 202 1_555 H O HOH . A HOH 421 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? metalc ? metalc11 D MG MG . A MG 203 1_555 H O HOH . A HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc12 D MG MG . A MG 203 1_555 H O HOH . A HOH 415 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? metalc ? metalc13 E CA CA . A CA 204 1_555 G OXT ACT . A ACT 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.572 ? metalc ? metalc14 E CA CA . A CA 204 1_555 G O ACT . A ACT 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.669 ? metalc ? metalc15 E CA CA . A CA 204 1_555 H O HOH . A HOH 371 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.66 ? metalc ? metalc16 E CA CA . A CA 204 1_555 H O HOH . A HOH 434 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.739 ? metalc ? metalc17 F MG MG . A MG 205 1_555 H O HOH . A HOH 335 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.593 ? metalc ? metalc18 F MG MG . A MG 205 1_555 H O HOH . A HOH 354 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4DLW _atom_sites.fract_transf_matrix[1][1] 0.011313 _atom_sites.fract_transf_matrix[1][2] 0.006531 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013063 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007467 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GNP A 1 201 201 GNP GNP . C 3 CA A 1 202 202 CA CA . D 4 MG A 1 203 203 MG MG . E 3 CA A 1 204 204 CA CA . F 4 MG A 1 205 205 MG MG . G 5 ACT A 1 206 206 ACT ACT . H 6 HOH A 1 301 301 HOH HOH . H 6 HOH A 2 302 302 HOH HOH . H 6 HOH A 3 303 304 HOH HOH . H 6 HOH A 4 304 306 HOH HOH . H 6 HOH A 5 305 307 HOH HOH . H 6 HOH A 6 306 308 HOH HOH . H 6 HOH A 7 307 309 HOH HOH . H 6 HOH A 8 308 310 HOH HOH . H 6 HOH A 9 309 311 HOH HOH . H 6 HOH A 10 310 312 HOH HOH . H 6 HOH A 11 311 313 HOH HOH . H 6 HOH A 12 312 314 HOH HOH . H 6 HOH A 13 313 315 HOH HOH . H 6 HOH A 14 314 316 HOH HOH . H 6 HOH A 15 315 317 HOH HOH . H 6 HOH A 16 316 318 HOH HOH . H 6 HOH A 17 317 320 HOH HOH . H 6 HOH A 18 318 321 HOH HOH . H 6 HOH A 19 319 322 HOH HOH . H 6 HOH A 20 320 323 HOH HOH . H 6 HOH A 21 321 324 HOH HOH . H 6 HOH A 22 322 326 HOH HOH . H 6 HOH A 23 323 327 HOH HOH . H 6 HOH A 24 324 328 HOH HOH . H 6 HOH A 25 325 329 HOH HOH . H 6 HOH A 26 326 331 HOH HOH . H 6 HOH A 27 327 332 HOH HOH . H 6 HOH A 28 328 333 HOH HOH . H 6 HOH A 29 329 334 HOH HOH . H 6 HOH A 30 330 336 HOH HOH . H 6 HOH A 31 331 337 HOH HOH . H 6 HOH A 32 332 338 HOH HOH . H 6 HOH A 33 333 339 HOH HOH . H 6 HOH A 34 334 341 HOH HOH . H 6 HOH A 35 335 342 HOH HOH . H 6 HOH A 36 336 343 HOH HOH . H 6 HOH A 37 337 344 HOH HOH . H 6 HOH A 38 338 346 HOH HOH . H 6 HOH A 39 339 347 HOH HOH . H 6 HOH A 40 340 348 HOH HOH . H 6 HOH A 41 341 349 HOH HOH . H 6 HOH A 42 342 350 HOH HOH . H 6 HOH A 43 343 351 HOH HOH . H 6 HOH A 44 344 352 HOH HOH . H 6 HOH A 45 345 353 HOH HOH . H 6 HOH A 46 346 354 HOH HOH . H 6 HOH A 47 347 355 HOH HOH . H 6 HOH A 48 348 356 HOH HOH . H 6 HOH A 49 349 357 HOH HOH . H 6 HOH A 50 350 359 HOH HOH . H 6 HOH A 51 351 360 HOH HOH . H 6 HOH A 52 352 361 HOH HOH . H 6 HOH A 53 353 363 HOH HOH . H 6 HOH A 54 354 364 HOH HOH . H 6 HOH A 55 355 365 HOH HOH . H 6 HOH A 56 356 366 HOH HOH . H 6 HOH A 57 357 368 HOH HOH . H 6 HOH A 58 358 369 HOH HOH . H 6 HOH A 59 359 370 HOH HOH . H 6 HOH A 60 360 372 HOH HOH . H 6 HOH A 61 361 374 HOH HOH . H 6 HOH A 62 362 375 HOH HOH . H 6 HOH A 63 363 376 HOH HOH . H 6 HOH A 64 364 377 HOH HOH . H 6 HOH A 65 365 378 HOH HOH . H 6 HOH A 66 366 381 HOH HOH . H 6 HOH A 67 367 382 HOH HOH . H 6 HOH A 68 368 384 HOH HOH . H 6 HOH A 69 369 388 HOH HOH . H 6 HOH A 70 370 390 HOH HOH . H 6 HOH A 71 371 394 HOH HOH . H 6 HOH A 72 372 395 HOH HOH . H 6 HOH A 73 373 396 HOH HOH . H 6 HOH A 74 374 398 HOH HOH . H 6 HOH A 75 375 399 HOH HOH . H 6 HOH A 76 376 403 HOH HOH . H 6 HOH A 77 377 405 HOH HOH . H 6 HOH A 78 378 406 HOH HOH . H 6 HOH A 79 379 407 HOH HOH . H 6 HOH A 80 380 409 HOH HOH . H 6 HOH A 81 381 410 HOH HOH . H 6 HOH A 82 382 412 HOH HOH . H 6 HOH A 83 383 413 HOH HOH . H 6 HOH A 84 384 414 HOH HOH . H 6 HOH A 85 385 415 HOH HOH . H 6 HOH A 86 386 420 HOH HOH . H 6 HOH A 87 387 423 HOH HOH . H 6 HOH A 88 388 427 HOH HOH . H 6 HOH A 89 389 428 HOH HOH . H 6 HOH A 90 390 434 HOH HOH . H 6 HOH A 91 391 439 HOH HOH . H 6 HOH A 92 392 441 HOH HOH . H 6 HOH A 93 393 442 HOH HOH . H 6 HOH A 94 394 449 HOH HOH . H 6 HOH A 95 395 450 HOH HOH . H 6 HOH A 96 396 451 HOH HOH . H 6 HOH A 97 397 452 HOH HOH . H 6 HOH A 98 398 456 HOH HOH . H 6 HOH A 99 399 463 HOH HOH . H 6 HOH A 100 400 464 HOH HOH . H 6 HOH A 101 401 469 HOH HOH . H 6 HOH A 102 402 474 HOH HOH . H 6 HOH A 103 403 476 HOH HOH . H 6 HOH A 104 404 481 HOH HOH . H 6 HOH A 105 405 493 HOH HOH . H 6 HOH A 106 406 500 HOH HOH . H 6 HOH A 107 407 503 HOH HOH . H 6 HOH A 108 408 505 HOH HOH . H 6 HOH A 109 409 507 HOH HOH . H 6 HOH A 110 410 510 HOH HOH . H 6 HOH A 111 411 513 HOH HOH . H 6 HOH A 112 412 536 HOH HOH . H 6 HOH A 113 413 175 HOH HOH . H 6 HOH A 114 414 543 HOH HOH . H 6 HOH A 115 415 544 HOH HOH . H 6 HOH A 116 416 1273 HOH HOH . H 6 HOH A 117 417 1274 HOH HOH . H 6 HOH A 118 418 1275 HOH HOH . H 6 HOH A 119 419 1276 HOH HOH . H 6 HOH A 120 420 1277 HOH HOH . H 6 HOH A 121 421 1278 HOH HOH . H 6 HOH A 122 422 1279 HOH HOH . H 6 HOH A 123 423 1280 HOH HOH . H 6 HOH A 124 424 1281 HOH HOH . H 6 HOH A 125 425 1282 HOH HOH . H 6 HOH A 126 426 1283 HOH HOH . H 6 HOH A 127 427 1284 HOH HOH . H 6 HOH A 128 428 1285 HOH HOH . H 6 HOH A 129 429 1286 HOH HOH . H 6 HOH A 130 430 1287 HOH HOH . H 6 HOH A 131 431 1288 HOH HOH . H 6 HOH A 132 432 1289 HOH HOH . H 6 HOH A 133 433 1290 HOH HOH . H 6 HOH A 134 434 1291 HOH HOH . H 6 HOH A 135 435 1292 HOH HOH . H 6 HOH A 136 436 1293 HOH HOH . H 6 HOH A 137 437 1294 HOH HOH . H 6 HOH A 138 438 1295 HOH HOH . H 6 HOH A 139 439 1296 HOH HOH . H 6 HOH A 140 440 1297 HOH HOH . H 6 HOH A 141 441 1298 HOH HOH . H 6 HOH A 142 442 1299 HOH HOH . H 6 HOH A 143 443 1300 HOH HOH . H 6 HOH A 144 444 1301 HOH HOH . H 6 HOH A 145 445 1302 HOH HOH . H 6 HOH A 146 446 1303 HOH HOH . H 6 HOH A 147 447 1304 HOH HOH . H 6 HOH A 148 448 1305 HOH HOH . H 6 HOH A 149 449 1306 HOH HOH . H 6 HOH A 150 450 1307 HOH HOH . H 6 HOH A 151 451 1308 HOH HOH . H 6 HOH A 152 452 1309 HOH HOH . H 6 HOH A 153 453 1310 HOH HOH . H 6 HOH A 154 454 1311 HOH HOH . H 6 HOH A 155 455 1312 HOH HOH . H 6 HOH A 156 456 1313 HOH HOH . H 6 HOH A 157 457 1314 HOH HOH . H 6 HOH A 158 458 1315 HOH HOH . H 6 HOH A 159 459 1316 HOH HOH . H 6 HOH A 160 460 1317 HOH HOH . H 6 HOH A 161 461 1318 HOH HOH . H 6 HOH A 162 462 1319 HOH HOH . H 6 HOH A 163 463 1320 HOH HOH . H 6 HOH A 164 464 1321 HOH HOH . H 6 HOH A 165 465 1322 HOH HOH . H 6 HOH A 166 466 1323 HOH HOH . H 6 HOH A 167 467 1324 HOH HOH . H 6 HOH A 168 468 1325 HOH HOH . H 6 HOH A 169 469 1326 HOH HOH . H 6 HOH A 170 470 1327 HOH HOH . H 6 HOH A 171 471 481 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x -4.345 _atom_site.Cartn_y 78.909 _atom_site.Cartn_z -72.012 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 21.21 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 202 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #