data_4DM8
#
_model_server_result.job_id            0uHJZi-OUJxD11xG9CPdvA 
_model_server_result.datetime_utc      '2025-01-02 18:32:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4dm8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":1501}' 
#
_entry.id    4DM8 
#
_exptl.entry_id    4DM8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              300.435 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'RETINOIC ACID' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4DM8 
_cell.length_a            58.482 
_cell.length_b            83.622 
_cell.length_c            108.779 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4DM8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,G,I 1 1 
B,D,F,H,J 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
#
_chem_comp.formula           'C20 H28 O2' 
_chem_comp.formula_weight    300.435 
_chem_comp.id                REA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'RETINOIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 REA sing 277 n n 
C1 C6 REA sing 278 n n 
C1 C16 REA sing 279 n n 
C1 C17 REA sing 280 n n 
C2 C3 REA sing 281 n n 
C2 H21 REA sing 282 n n 
C2 H22 REA sing 283 n n 
C3 C4 REA sing 284 n n 
C3 H31 REA sing 285 n n 
C3 H32 REA sing 286 n n 
C4 C5 REA sing 287 n n 
C4 H41 REA sing 288 n n 
C4 H42 REA sing 289 n n 
C5 C6 REA doub 290 n n 
C5 C18 REA sing 291 n n 
C6 C7 REA sing 292 n n 
C7 C8 REA doub 293 e n 
C7 H7 REA sing 294 n n 
C8 C9 REA sing 295 n n 
C8 H8 REA sing 296 n n 
C9 C10 REA doub 297 e n 
C9 C19 REA sing 298 n n 
C10 C11 REA sing 299 n n 
C10 H10 REA sing 300 n n 
C11 C12 REA doub 301 e n 
C11 H11 REA sing 302 n n 
C12 C13 REA sing 303 n n 
C12 H12 REA sing 304 n n 
C13 C14 REA doub 305 e n 
C13 C20 REA sing 306 n n 
C14 C15 REA sing 307 n n 
C14 H14 REA sing 308 n n 
C15 O1 REA doub 309 n n 
C15 O2 REA sing 310 n n 
C16 H161 REA sing 311 n n 
C16 H162 REA sing 312 n n 
C16 H163 REA sing 313 n n 
C17 H171 REA sing 314 n n 
C17 H172 REA sing 315 n n 
C17 H173 REA sing 316 n n 
C18 H181 REA sing 317 n n 
C18 H182 REA sing 318 n n 
C18 H183 REA sing 319 n n 
C19 H191 REA sing 320 n n 
C19 H192 REA sing 321 n n 
C19 H193 REA sing 322 n n 
C20 H201 REA sing 323 n n 
C20 H202 REA sing 324 n n 
C20 H203 REA sing 325 n n 
O2 HO2 REA sing 326 n n 
#
_atom_sites.entry_id                     4DM8 
_atom_sites.fract_transf_matrix[1][1]    0.017099 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011959 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009193 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 REA A 1 501 1424 REA REA . 
F 3 REA B 1 1501 424 REA REA . 
G 4 HOH A 1 601 9 HOH TIP . 
G 4 HOH A 2 602 14 HOH TIP . 
G 4 HOH A 3 603 20 HOH TIP . 
G 4 HOH A 4 604 25 HOH TIP . 
G 4 HOH A 5 605 26 HOH TIP . 
G 4 HOH A 6 606 27 HOH TIP . 
G 4 HOH A 7 607 36 HOH TIP . 
G 4 HOH A 8 608 39 HOH TIP . 
G 4 HOH A 9 609 40 HOH TIP . 
G 4 HOH A 10 610 41 HOH TIP . 
G 4 HOH A 11 611 42 HOH TIP . 
G 4 HOH A 12 612 43 HOH TIP . 
G 4 HOH A 13 613 45 HOH TIP . 
G 4 HOH A 14 614 51 HOH TIP . 
G 4 HOH A 15 615 56 HOH TIP . 
G 4 HOH A 16 616 58 HOH TIP . 
G 4 HOH A 17 617 65 HOH TIP . 
G 4 HOH A 18 618 66 HOH TIP . 
G 4 HOH A 19 619 67 HOH TIP . 
G 4 HOH A 20 620 68 HOH TIP . 
G 4 HOH A 21 621 69 HOH TIP . 
G 4 HOH A 22 622 72 HOH TIP . 
G 4 HOH A 23 623 73 HOH TIP . 
G 4 HOH A 24 624 75 HOH TIP . 
G 4 HOH A 25 625 76 HOH TIP . 
G 4 HOH A 26 626 93 HOH TIP . 
G 4 HOH A 27 627 96 HOH TIP . 
G 4 HOH A 28 628 118 HOH TIP . 
G 4 HOH A 29 629 119 HOH TIP . 
G 4 HOH A 30 630 126 HOH TIP . 
G 4 HOH A 31 631 128 HOH TIP . 
H 4 HOH B 1 1601 1 HOH TIP . 
H 4 HOH B 2 1602 2 HOH TIP . 
H 4 HOH B 3 1603 3 HOH TIP . 
H 4 HOH B 4 1604 4 HOH TIP . 
H 4 HOH B 5 1605 5 HOH TIP . 
H 4 HOH B 6 1606 6 HOH TIP . 
H 4 HOH B 7 1607 7 HOH TIP . 
H 4 HOH B 8 1608 10 HOH TIP . 
H 4 HOH B 9 1609 11 HOH TIP . 
H 4 HOH B 10 1610 12 HOH TIP . 
H 4 HOH B 11 1611 13 HOH TIP . 
H 4 HOH B 12 1612 15 HOH TIP . 
H 4 HOH B 13 1613 16 HOH TIP . 
H 4 HOH B 14 1614 17 HOH TIP . 
H 4 HOH B 15 1615 18 HOH TIP . 
H 4 HOH B 16 1616 19 HOH TIP . 
H 4 HOH B 17 1617 21 HOH TIP . 
H 4 HOH B 18 1618 22 HOH TIP . 
H 4 HOH B 19 1619 23 HOH TIP . 
H 4 HOH B 20 1620 24 HOH TIP . 
H 4 HOH B 21 1621 28 HOH TIP . 
H 4 HOH B 22 1622 29 HOH TIP . 
H 4 HOH B 23 1623 30 HOH TIP . 
H 4 HOH B 24 1624 31 HOH TIP . 
H 4 HOH B 25 1625 33 HOH TIP . 
H 4 HOH B 26 1626 34 HOH TIP . 
H 4 HOH B 27 1627 35 HOH TIP . 
H 4 HOH B 28 1628 37 HOH TIP . 
H 4 HOH B 29 1629 38 HOH TIP . 
H 4 HOH B 30 1630 46 HOH TIP . 
H 4 HOH B 31 1631 47 HOH TIP . 
H 4 HOH B 32 1632 48 HOH TIP . 
H 4 HOH B 33 1633 49 HOH TIP . 
H 4 HOH B 34 1634 52 HOH TIP . 
H 4 HOH B 35 1635 53 HOH TIP . 
H 4 HOH B 36 1636 54 HOH TIP . 
H 4 HOH B 37 1637 55 HOH TIP . 
H 4 HOH B 38 1638 57 HOH TIP . 
H 4 HOH B 39 1639 59 HOH TIP . 
H 4 HOH B 40 1640 60 HOH TIP . 
H 4 HOH B 41 1641 61 HOH TIP . 
H 4 HOH B 42 1642 62 HOH TIP . 
H 4 HOH B 43 1643 63 HOH TIP . 
H 4 HOH B 44 1644 64 HOH TIP . 
H 4 HOH B 45 1645 70 HOH TIP . 
H 4 HOH B 46 1646 71 HOH TIP . 
H 4 HOH B 47 1647 74 HOH TIP . 
H 4 HOH B 48 1648 77 HOH TIP . 
H 4 HOH B 49 1649 78 HOH TIP . 
H 4 HOH B 50 1650 79 HOH TIP . 
H 4 HOH B 51 1651 80 HOH TIP . 
H 4 HOH B 52 1652 81 HOH TIP . 
H 4 HOH B 53 1653 82 HOH TIP . 
H 4 HOH B 54 1654 83 HOH TIP . 
H 4 HOH B 55 1655 84 HOH TIP . 
H 4 HOH B 56 1656 85 HOH TIP . 
H 4 HOH B 57 1657 86 HOH TIP . 
H 4 HOH B 58 1658 87 HOH TIP . 
H 4 HOH B 59 1659 88 HOH TIP . 
H 4 HOH B 60 1660 89 HOH TIP . 
H 4 HOH B 61 1661 90 HOH TIP . 
H 4 HOH B 62 1662 91 HOH TIP . 
H 4 HOH B 63 1663 92 HOH TIP . 
H 4 HOH B 64 1664 94 HOH TIP . 
H 4 HOH B 65 1665 95 HOH TIP . 
H 4 HOH B 66 1666 97 HOH TIP . 
H 4 HOH B 67 1667 98 HOH TIP . 
H 4 HOH B 68 1668 99 HOH TIP . 
H 4 HOH B 69 1669 100 HOH TIP . 
H 4 HOH B 70 1670 101 HOH TIP . 
H 4 HOH B 71 1671 102 HOH TIP . 
H 4 HOH B 72 1672 103 HOH TIP . 
H 4 HOH B 73 1673 104 HOH TIP . 
H 4 HOH B 74 1674 105 HOH TIP . 
H 4 HOH B 75 1675 106 HOH TIP . 
H 4 HOH B 76 1676 107 HOH TIP . 
H 4 HOH B 77 1677 108 HOH TIP . 
H 4 HOH B 78 1678 109 HOH TIP . 
H 4 HOH B 79 1679 110 HOH TIP . 
H 4 HOH B 80 1680 111 HOH TIP . 
H 4 HOH B 81 1681 112 HOH TIP . 
H 4 HOH B 82 1682 113 HOH TIP . 
H 4 HOH B 83 1683 114 HOH TIP . 
H 4 HOH B 84 1684 115 HOH TIP . 
H 4 HOH B 85 1685 120 HOH TIP . 
H 4 HOH B 86 1686 121 HOH TIP . 
H 4 HOH B 87 1687 122 HOH TIP . 
H 4 HOH B 88 1688 123 HOH TIP . 
H 4 HOH B 89 1689 124 HOH TIP . 
H 4 HOH B 90 1690 125 HOH TIP . 
H 4 HOH B 91 1691 129 HOH TIP . 
I 4 HOH C 1 701 44 HOH TIP . 
I 4 HOH C 2 702 117 HOH TIP . 
J 4 HOH D 1 1701 8 HOH TIP . 
J 4 HOH D 2 1702 32 HOH TIP . 
J 4 HOH D 3 1703 116 HOH TIP . 
J 4 HOH D 4 1704 127 HOH TIP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 REA . . . F 3 -8.78 13.087 43.27 1 33.6 ? C1 REA 1501 B 1 
HETATM 2 C C2 REA . . . F 3 -8.936 14.646 43.053 1 33.85 ? C2 REA 1501 B 1 
HETATM 3 C C3 REA . . . F 3 -9.303 15.487 44.266 1 34.47 ? C3 REA 1501 B 1 
HETATM 4 C C4 REA . . . F 3 -8.411 15.243 45.457 1 34.55 ? C4 REA 1501 B 1 
HETATM 5 C C5 REA . . . F 3 -8.21 13.747 45.78 1 33.77 ? C5 REA 1501 B 1 
HETATM 6 C C6 REA . . . F 3 -8.371 12.734 44.81 1 31.97 ? C6 REA 1501 B 1 
HETATM 7 C C7 REA . . . F 3 -8.188 11.25 45.059 1 31.67 ? C7 REA 1501 B 1 
HETATM 8 C C8 REA . . . F 3 -8.503 10.44 46.115 1 30.09 ? C8 REA 1501 B 1 
HETATM 9 C C9 REA . . . F 3 -8.229 9.008 46.179 1 27.61 ? C9 REA 1501 B 1 
HETATM 10 C C10 REA . . . F 3 -8.562 8.262 47.261 1 26.09 ? C10 REA 1501 B 1 
HETATM 11 C C11 REA . . . F 3 -9.22 8.626 48.5 1 28.97 ? C11 REA 1501 B 1 
HETATM 12 C C12 REA . . . F 3 -9.37 7.591 49.359 1 32.12 ? C12 REA 1501 B 1 
HETATM 13 C C13 REA . . . F 3 -10.039 7.601 50.651 1 35.57 ? C13 REA 1501 B 1 
HETATM 14 C C14 REA . . . F 3 -10.054 6.415 51.327 1 38.98 ? C14 REA 1501 B 1 
HETATM 15 C C15 REA . . . F 3 -10.643 5.982 52.621 1 42.61 ? C15 REA 1501 B 1 
HETATM 16 C C16 REA . . . F 3 -7.699 12.594 42.284 1 32.13 ? C16 REA 1501 B 1 
HETATM 17 C C17 REA . . . F 3 -10.157 12.419 42.916 1 30.65 ? C17 REA 1501 B 1 
HETATM 18 C C18 REA . . . F 3 -7.829 13.612 47.262 1 33.64 ? C18 REA 1501 B 1 
HETATM 19 C C19 REA . . . F 3 -7.541 8.319 44.995 1 25.14 ? C19 REA 1501 B 1 
HETATM 20 C C20 REA . . . F 3 -10.695 8.894 51.162 1 34.33 ? C20 REA 1501 B 1 
HETATM 21 O O1 REA . . . F 3 -10.464 4.814 52.971 1 47.43 ? O1 REA 1501 B 1 
HETATM 22 O O2 REA . . . F 3 -11.312 6.751 53.346 1 41.1 ? O2 REA 1501 B 1 
#
_model_server_stats.io_time_ms              44 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           315 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           22 
#