data_4DMX
#
_model_server_result.job_id            KuYjKUJ9hzrhvRj8WUV0eA 
_model_server_result.datetime_utc      '2024-11-26 05:56:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4dmx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":301}' 
#
_entry.id    4DMX 
#
_exptl.entry_id    4DMX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              398.474 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (1R,2R)-N-(1-cyanocyclopropyl)-2-{[4-(4-fluorophenyl)piperazin-1-yl]carbonyl}cyclohexanecarboxamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          109.96 
_cell.angle_gamma         90 
_cell.entry_id            4DMX 
_cell.length_a            32.362 
_cell.length_b            83.958 
_cell.length_c            35.999 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4DMX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 22 A CYS 22 1_555 A SG CYS 63 A CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf2 A SG CYS 56 A CYS 56 1_555 A SG CYS 96 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? 
disulf ? disulf3 A SG CYS 155 A CYS 155 1_555 A SG CYS 204 A CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
covale ? covale1 A SG CYS 25 A CYS 25 1_555 B C28 0LB . A 0LB 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.776 ? 
#
_chem_comp.formula           'C22 H27 F N4 O2' 
_chem_comp.formula_weight    398.474 
_chem_comp.id                0LB 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (1R,2R)-N-(1-cyanocyclopropyl)-2-{[4-(4-fluorophenyl)piperazin-1-yl]carbonyl}cyclohexanecarboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C3 C1 0LB doub 1 n y 
C3 C5 0LB sing 2 n y 
F13 C5 0LB sing 3 n n 
C1 C2 0LB sing 4 n y 
C5 C6 0LB doub 5 n y 
C12 C10 0LB sing 6 n n 
C12 N11 0LB sing 7 n n 
C19 C17 0LB sing 8 n n 
C19 C21 0LB sing 9 n n 
C2 N11 0LB sing 10 n n 
C2 C4 0LB doub 11 n y 
C6 C4 0LB sing 12 n y 
C10 N8 0LB sing 13 n n 
C17 C16 0LB sing 14 n n 
N11 C9 0LB sing 15 n n 
C21 C20 0LB sing 16 n n 
C16 C18 0LB sing 17 n n 
C20 C18 0LB sing 18 n n 
C20 C14 0LB sing 19 n n 
N8 C14 0LB sing 20 n n 
N8 C7 0LB sing 21 n n 
O23 C22 0LB doub 22 n n 
C18 C22 0LB sing 23 n n 
C9 C7 0LB sing 24 n n 
C14 O15 0LB doub 25 n n 
C22 N24 0LB sing 26 n n 
N24 C25 0LB sing 27 n n 
C28 C25 0LB sing 28 n n 
C28 N29 0LB trip 29 n n 
C25 C27 0LB sing 30 n n 
C25 C26 0LB sing 31 n n 
C27 C26 0LB sing 32 n n 
C27 H3 0LB sing 33 n n 
C27 H4 0LB sing 34 n n 
C26 H5 0LB sing 35 n n 
C26 H6 0LB sing 36 n n 
N24 H7 0LB sing 37 n n 
C18 H8 0LB sing 38 n n 
C16 H9 0LB sing 39 n n 
C16 H10 0LB sing 40 n n 
C20 H11 0LB sing 41 n n 
C21 H12 0LB sing 42 n n 
C21 H13 0LB sing 43 n n 
C19 H14 0LB sing 44 n n 
C19 H15 0LB sing 45 n n 
C17 H16 0LB sing 46 n n 
C17 H17 0LB sing 47 n n 
C10 H18 0LB sing 48 n n 
C10 H19 0LB sing 49 n n 
C12 H20 0LB sing 50 n n 
C12 H21 0LB sing 51 n n 
C9 H22 0LB sing 52 n n 
C9 H23 0LB sing 53 n n 
C7 H24 0LB sing 54 n n 
C7 H25 0LB sing 55 n n 
C4 H26 0LB sing 56 n n 
C6 H27 0LB sing 57 n n 
C3 H28 0LB sing 58 n n 
C1 H29 0LB sing 59 n n 
#
_atom_sites.entry_id                     4DMX 
_atom_sites.fract_transf_matrix[1][1]    0.0309 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.011222 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011911 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.029554 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 0LB A 1 301 1 0LB INX . 
C 3 GOL A 1 302 1 GOL GOL . 
D 4 HOH A 1 401 1 HOH HOH . 
D 4 HOH A 2 402 2 HOH HOH . 
D 4 HOH A 3 403 3 HOH HOH . 
D 4 HOH A 4 404 4 HOH HOH . 
D 4 HOH A 5 405 5 HOH HOH . 
D 4 HOH A 6 406 6 HOH HOH . 
D 4 HOH A 7 407 7 HOH HOH . 
D 4 HOH A 8 408 8 HOH HOH . 
D 4 HOH A 9 409 9 HOH HOH . 
D 4 HOH A 10 410 10 HOH HOH . 
D 4 HOH A 11 411 11 HOH HOH . 
D 4 HOH A 12 412 12 HOH HOH . 
D 4 HOH A 13 413 13 HOH HOH . 
D 4 HOH A 14 414 14 HOH HOH . 
D 4 HOH A 15 415 15 HOH HOH . 
D 4 HOH A 16 416 16 HOH HOH . 
D 4 HOH A 17 417 17 HOH HOH . 
D 4 HOH A 18 418 18 HOH HOH . 
D 4 HOH A 19 419 19 HOH HOH . 
D 4 HOH A 20 420 20 HOH HOH . 
D 4 HOH A 21 421 21 HOH HOH . 
D 4 HOH A 22 422 22 HOH HOH . 
D 4 HOH A 23 423 23 HOH HOH . 
D 4 HOH A 24 424 24 HOH HOH . 
D 4 HOH A 25 425 25 HOH HOH . 
D 4 HOH A 26 426 26 HOH HOH . 
D 4 HOH A 27 427 27 HOH HOH . 
D 4 HOH A 28 428 28 HOH HOH . 
D 4 HOH A 29 429 29 HOH HOH . 
D 4 HOH A 30 430 30 HOH HOH . 
D 4 HOH A 31 431 31 HOH HOH . 
D 4 HOH A 32 432 32 HOH HOH . 
D 4 HOH A 33 433 33 HOH HOH . 
D 4 HOH A 34 434 34 HOH HOH . 
D 4 HOH A 35 435 35 HOH HOH . 
D 4 HOH A 36 436 36 HOH HOH . 
D 4 HOH A 37 437 37 HOH HOH . 
D 4 HOH A 38 438 38 HOH HOH . 
D 4 HOH A 39 439 39 HOH HOH . 
D 4 HOH A 40 440 40 HOH HOH . 
D 4 HOH A 41 441 41 HOH HOH . 
D 4 HOH A 42 442 42 HOH HOH . 
D 4 HOH A 43 443 43 HOH HOH . 
D 4 HOH A 44 444 44 HOH HOH . 
D 4 HOH A 45 445 45 HOH HOH . 
D 4 HOH A 46 446 46 HOH HOH . 
D 4 HOH A 47 447 47 HOH HOH . 
D 4 HOH A 48 448 48 HOH HOH . 
D 4 HOH A 49 449 49 HOH HOH . 
D 4 HOH A 50 450 50 HOH HOH . 
D 4 HOH A 51 451 51 HOH HOH . 
D 4 HOH A 52 452 52 HOH HOH . 
D 4 HOH A 53 453 53 HOH HOH . 
D 4 HOH A 54 454 54 HOH HOH . 
D 4 HOH A 55 455 55 HOH HOH . 
D 4 HOH A 56 456 56 HOH HOH . 
D 4 HOH A 57 457 57 HOH HOH . 
D 4 HOH A 58 458 58 HOH HOH . 
D 4 HOH A 59 459 59 HOH HOH . 
D 4 HOH A 60 460 60 HOH HOH . 
D 4 HOH A 61 461 61 HOH HOH . 
D 4 HOH A 62 462 62 HOH HOH . 
D 4 HOH A 63 463 63 HOH HOH . 
D 4 HOH A 64 464 64 HOH HOH . 
D 4 HOH A 65 465 65 HOH HOH . 
D 4 HOH A 66 466 66 HOH HOH . 
D 4 HOH A 67 467 67 HOH HOH . 
D 4 HOH A 68 468 68 HOH HOH . 
D 4 HOH A 69 469 69 HOH HOH . 
D 4 HOH A 70 470 70 HOH HOH . 
D 4 HOH A 71 471 71 HOH HOH . 
D 4 HOH A 72 472 72 HOH HOH . 
D 4 HOH A 73 473 73 HOH HOH . 
D 4 HOH A 74 474 74 HOH HOH . 
D 4 HOH A 75 475 75 HOH HOH . 
D 4 HOH A 76 476 76 HOH HOH . 
D 4 HOH A 77 477 77 HOH HOH . 
D 4 HOH A 78 478 78 HOH HOH . 
D 4 HOH A 79 479 79 HOH HOH . 
D 4 HOH A 80 480 80 HOH HOH . 
D 4 HOH A 81 481 81 HOH HOH . 
D 4 HOH A 82 482 82 HOH HOH . 
D 4 HOH A 83 483 83 HOH HOH . 
D 4 HOH A 84 484 84 HOH HOH . 
D 4 HOH A 85 485 85 HOH HOH . 
D 4 HOH A 86 486 86 HOH HOH . 
D 4 HOH A 87 487 87 HOH HOH . 
D 4 HOH A 88 488 88 HOH HOH . 
D 4 HOH A 89 489 89 HOH HOH . 
D 4 HOH A 90 490 90 HOH HOH . 
D 4 HOH A 91 491 91 HOH HOH . 
D 4 HOH A 92 492 92 HOH HOH . 
D 4 HOH A 93 493 93 HOH HOH . 
D 4 HOH A 94 494 94 HOH HOH . 
D 4 HOH A 95 495 95 HOH HOH . 
D 4 HOH A 96 496 96 HOH HOH . 
D 4 HOH A 97 497 97 HOH HOH . 
D 4 HOH A 98 498 98 HOH HOH . 
D 4 HOH A 99 499 99 HOH HOH . 
D 4 HOH A 100 500 100 HOH HOH . 
D 4 HOH A 101 501 101 HOH HOH . 
D 4 HOH A 102 502 102 HOH HOH . 
D 4 HOH A 103 503 103 HOH HOH . 
D 4 HOH A 104 504 104 HOH HOH . 
D 4 HOH A 105 505 105 HOH HOH . 
D 4 HOH A 106 506 106 HOH HOH . 
D 4 HOH A 107 507 107 HOH HOH . 
D 4 HOH A 108 508 108 HOH HOH . 
D 4 HOH A 109 509 109 HOH HOH . 
D 4 HOH A 110 510 110 HOH HOH . 
D 4 HOH A 111 511 111 HOH HOH . 
D 4 HOH A 112 512 112 HOH HOH . 
D 4 HOH A 113 513 113 HOH HOH . 
D 4 HOH A 114 514 114 HOH HOH . 
D 4 HOH A 115 515 115 HOH HOH . 
D 4 HOH A 116 516 116 HOH HOH . 
D 4 HOH A 117 517 117 HOH HOH . 
D 4 HOH A 118 518 118 HOH HOH . 
D 4 HOH A 119 519 119 HOH HOH . 
D 4 HOH A 120 520 120 HOH HOH . 
D 4 HOH A 121 521 121 HOH HOH . 
D 4 HOH A 122 522 123 HOH HOH . 
D 4 HOH A 123 523 124 HOH HOH . 
D 4 HOH A 124 524 125 HOH HOH . 
D 4 HOH A 125 525 126 HOH HOH . 
D 4 HOH A 126 526 127 HOH HOH . 
D 4 HOH A 127 527 128 HOH HOH . 
D 4 HOH A 128 528 129 HOH HOH . 
D 4 HOH A 129 529 130 HOH HOH . 
D 4 HOH A 130 530 131 HOH HOH . 
D 4 HOH A 131 531 132 HOH HOH . 
D 4 HOH A 132 532 133 HOH HOH . 
D 4 HOH A 133 533 134 HOH HOH . 
D 4 HOH A 134 534 135 HOH HOH . 
D 4 HOH A 135 535 136 HOH HOH . 
D 4 HOH A 136 536 137 HOH HOH . 
D 4 HOH A 137 537 138 HOH HOH . 
D 4 HOH A 138 538 139 HOH HOH . 
D 4 HOH A 139 539 140 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N29 0LB . . . B 2 -1.261 4.094 14.943 1 22.22 ? N29 0LB 301 A 1 
HETATM 2 C C28 0LB . . . B 2 -1.802 3.181 14.19 1 27.31 ? C28 0LB 301 A 1 
HETATM 3 C C25 0LB . . . B 2 -3.199 2.842 14.473 1 27.08 ? C25 0LB 301 A 1 
HETATM 4 C C27 0LB . . . B 2 -4.23 3.804 15.013 1 27.29 ? C27 0LB 301 A 1 
HETATM 5 C C26 0LB . . . B 2 -3.593 2.851 15.976 1 26.48 ? C26 0LB 301 A 1 
HETATM 6 N N24 0LB . . . B 2 -3.639 1.671 13.741 1 20.63 ? N24 0LB 301 A 1 
HETATM 7 C C22 0LB . . . B 2 -4.227 1.557 12.514 1 22.27 ? C22 0LB 301 A 1 
HETATM 8 O O23 0LB . . . B 2 -4.496 2.552 11.873 1 20.33 ? O23 0LB 301 A 1 
HETATM 9 C C18 0LB . . . B 2 -4.553 0.181 11.983 1 17.24 ? C18 0LB 301 A 1 
HETATM 10 C C16 0LB . . . B 2 -3.478 -0.22 10.957 1 19.99 ? C16 0LB 301 A 1 
HETATM 11 C C20 0LB . . . B 2 -5.946 0.206 11.315 1 23.45 ? C20 0LB 301 A 1 
HETATM 12 C C21 0LB . . . B 2 -6.251 -1.228 10.862 1 23.66 ? C21 0LB 301 A 1 
HETATM 13 C C19 0LB . . . B 2 -5.203 -1.722 9.848 1 21.18 ? C19 0LB 301 A 1 
HETATM 14 C C17 0LB . . . B 2 -3.785 -1.626 10.397 1 19.3 ? C17 0LB 301 A 1 
HETATM 15 C C14 0LB . . . B 2 -7.037 0.747 12.234 1 26.68 ? C14 0LB 301 A 1 
HETATM 16 O O15 0LB . . . B 2 -6.838 0.807 13.429 1 25.25 ? O15 0LB 301 A 1 
HETATM 17 N N8 0LB . . . B 2 -8.232 1.218 11.701 1 27.43 ? N8 0LB 301 A 1 
HETATM 18 C C10 0LB . . . B 2 -8.725 0.979 10.332 1 22.06 ? C10 0LB 301 A 1 
HETATM 19 C C12 0LB . . . B 2 -9.431 2.205 9.741 1 28.49 ? C12 0LB 301 A 1 
HETATM 20 N N11 0LB . . . B 2 -10.391 2.919 10.623 1 36.67 ? N11 0LB 301 A 1 
HETATM 21 C C9 0LB . . . B 2 -9.93 2.964 12.035 1 29.29 ? C9 0LB 301 A 1 
HETATM 22 C C7 0LB . . . B 2 -9.335 1.665 12.567 1 23.69 ? C7 0LB 301 A 1 
HETATM 23 C C2 0LB . . . B 2 -11.322 3.878 10.063 1 40.47 ? C2 0LB 301 A 1 
HETATM 24 C C4 0LB . . . B 2 -12.224 4.605 10.851 1 42.73 ? C4 0LB 301 A 1 
HETATM 25 C C6 0LB . . . B 2 -13.106 5.509 10.27 1 43.46 ? C6 0LB 301 A 1 
HETATM 26 C C5 0LB . . . B 2 -13.115 5.718 8.902 1 47.6 ? C5 0LB 301 A 1 
HETATM 27 F F13 0LB . . . B 2 -13.959 6.585 8.335 1 49.33 ? F13 0LB 301 A 1 
HETATM 28 C C3 0LB . . . B 2 -12.23 5.019 8.106 1 44.6 ? C3 0LB 301 A 1 
HETATM 29 C C1 0LB . . . B 2 -11.348 4.113 8.676 1 44.66 ? C1 0LB 301 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           269 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           29 
#