data_4DMX
#
_model_server_result.job_id            00_YMWig9I69EP65LjLZRQ 
_model_server_result.datetime_utc      '2024-11-26 05:43:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4dmx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":302}' 
#
_entry.id    4DMX 
#
_exptl.entry_id    4DMX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          109.96 
_cell.angle_gamma         90 
_cell.entry_id            4DMX 
_cell.length_a            32.362 
_cell.length_b            83.958 
_cell.length_c            35.999 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4DMX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 22 A CYS 22 1_555 A SG CYS 63 A CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf2 A SG CYS 56 A CYS 56 1_555 A SG CYS 96 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? 
disulf ? disulf3 A SG CYS 155 A CYS 155 1_555 A SG CYS 204 A CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
covale ? covale1 A SG CYS 25 A CYS 25 1_555 B C28 0LB . A 0LB 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.776 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 188 n n 
C1 C2 GOL sing 189 n n 
C1 H11 GOL sing 190 n n 
C1 H12 GOL sing 191 n n 
O1 HO1 GOL sing 192 n n 
C2 O2 GOL sing 193 n n 
C2 C3 GOL sing 194 n n 
C2 H2 GOL sing 195 n n 
O2 HO2 GOL sing 196 n n 
C3 O3 GOL sing 197 n n 
C3 H31 GOL sing 198 n n 
C3 H32 GOL sing 199 n n 
O3 HO3 GOL sing 200 n n 
#
_atom_sites.entry_id                     4DMX 
_atom_sites.fract_transf_matrix[1][1]    0.0309 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.011222 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011911 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.029554 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 0LB A 1 301 1 0LB INX . 
C 3 GOL A 1 302 1 GOL GOL . 
D 4 HOH A 1 401 1 HOH HOH . 
D 4 HOH A 2 402 2 HOH HOH . 
D 4 HOH A 3 403 3 HOH HOH . 
D 4 HOH A 4 404 4 HOH HOH . 
D 4 HOH A 5 405 5 HOH HOH . 
D 4 HOH A 6 406 6 HOH HOH . 
D 4 HOH A 7 407 7 HOH HOH . 
D 4 HOH A 8 408 8 HOH HOH . 
D 4 HOH A 9 409 9 HOH HOH . 
D 4 HOH A 10 410 10 HOH HOH . 
D 4 HOH A 11 411 11 HOH HOH . 
D 4 HOH A 12 412 12 HOH HOH . 
D 4 HOH A 13 413 13 HOH HOH . 
D 4 HOH A 14 414 14 HOH HOH . 
D 4 HOH A 15 415 15 HOH HOH . 
D 4 HOH A 16 416 16 HOH HOH . 
D 4 HOH A 17 417 17 HOH HOH . 
D 4 HOH A 18 418 18 HOH HOH . 
D 4 HOH A 19 419 19 HOH HOH . 
D 4 HOH A 20 420 20 HOH HOH . 
D 4 HOH A 21 421 21 HOH HOH . 
D 4 HOH A 22 422 22 HOH HOH . 
D 4 HOH A 23 423 23 HOH HOH . 
D 4 HOH A 24 424 24 HOH HOH . 
D 4 HOH A 25 425 25 HOH HOH . 
D 4 HOH A 26 426 26 HOH HOH . 
D 4 HOH A 27 427 27 HOH HOH . 
D 4 HOH A 28 428 28 HOH HOH . 
D 4 HOH A 29 429 29 HOH HOH . 
D 4 HOH A 30 430 30 HOH HOH . 
D 4 HOH A 31 431 31 HOH HOH . 
D 4 HOH A 32 432 32 HOH HOH . 
D 4 HOH A 33 433 33 HOH HOH . 
D 4 HOH A 34 434 34 HOH HOH . 
D 4 HOH A 35 435 35 HOH HOH . 
D 4 HOH A 36 436 36 HOH HOH . 
D 4 HOH A 37 437 37 HOH HOH . 
D 4 HOH A 38 438 38 HOH HOH . 
D 4 HOH A 39 439 39 HOH HOH . 
D 4 HOH A 40 440 40 HOH HOH . 
D 4 HOH A 41 441 41 HOH HOH . 
D 4 HOH A 42 442 42 HOH HOH . 
D 4 HOH A 43 443 43 HOH HOH . 
D 4 HOH A 44 444 44 HOH HOH . 
D 4 HOH A 45 445 45 HOH HOH . 
D 4 HOH A 46 446 46 HOH HOH . 
D 4 HOH A 47 447 47 HOH HOH . 
D 4 HOH A 48 448 48 HOH HOH . 
D 4 HOH A 49 449 49 HOH HOH . 
D 4 HOH A 50 450 50 HOH HOH . 
D 4 HOH A 51 451 51 HOH HOH . 
D 4 HOH A 52 452 52 HOH HOH . 
D 4 HOH A 53 453 53 HOH HOH . 
D 4 HOH A 54 454 54 HOH HOH . 
D 4 HOH A 55 455 55 HOH HOH . 
D 4 HOH A 56 456 56 HOH HOH . 
D 4 HOH A 57 457 57 HOH HOH . 
D 4 HOH A 58 458 58 HOH HOH . 
D 4 HOH A 59 459 59 HOH HOH . 
D 4 HOH A 60 460 60 HOH HOH . 
D 4 HOH A 61 461 61 HOH HOH . 
D 4 HOH A 62 462 62 HOH HOH . 
D 4 HOH A 63 463 63 HOH HOH . 
D 4 HOH A 64 464 64 HOH HOH . 
D 4 HOH A 65 465 65 HOH HOH . 
D 4 HOH A 66 466 66 HOH HOH . 
D 4 HOH A 67 467 67 HOH HOH . 
D 4 HOH A 68 468 68 HOH HOH . 
D 4 HOH A 69 469 69 HOH HOH . 
D 4 HOH A 70 470 70 HOH HOH . 
D 4 HOH A 71 471 71 HOH HOH . 
D 4 HOH A 72 472 72 HOH HOH . 
D 4 HOH A 73 473 73 HOH HOH . 
D 4 HOH A 74 474 74 HOH HOH . 
D 4 HOH A 75 475 75 HOH HOH . 
D 4 HOH A 76 476 76 HOH HOH . 
D 4 HOH A 77 477 77 HOH HOH . 
D 4 HOH A 78 478 78 HOH HOH . 
D 4 HOH A 79 479 79 HOH HOH . 
D 4 HOH A 80 480 80 HOH HOH . 
D 4 HOH A 81 481 81 HOH HOH . 
D 4 HOH A 82 482 82 HOH HOH . 
D 4 HOH A 83 483 83 HOH HOH . 
D 4 HOH A 84 484 84 HOH HOH . 
D 4 HOH A 85 485 85 HOH HOH . 
D 4 HOH A 86 486 86 HOH HOH . 
D 4 HOH A 87 487 87 HOH HOH . 
D 4 HOH A 88 488 88 HOH HOH . 
D 4 HOH A 89 489 89 HOH HOH . 
D 4 HOH A 90 490 90 HOH HOH . 
D 4 HOH A 91 491 91 HOH HOH . 
D 4 HOH A 92 492 92 HOH HOH . 
D 4 HOH A 93 493 93 HOH HOH . 
D 4 HOH A 94 494 94 HOH HOH . 
D 4 HOH A 95 495 95 HOH HOH . 
D 4 HOH A 96 496 96 HOH HOH . 
D 4 HOH A 97 497 97 HOH HOH . 
D 4 HOH A 98 498 98 HOH HOH . 
D 4 HOH A 99 499 99 HOH HOH . 
D 4 HOH A 100 500 100 HOH HOH . 
D 4 HOH A 101 501 101 HOH HOH . 
D 4 HOH A 102 502 102 HOH HOH . 
D 4 HOH A 103 503 103 HOH HOH . 
D 4 HOH A 104 504 104 HOH HOH . 
D 4 HOH A 105 505 105 HOH HOH . 
D 4 HOH A 106 506 106 HOH HOH . 
D 4 HOH A 107 507 107 HOH HOH . 
D 4 HOH A 108 508 108 HOH HOH . 
D 4 HOH A 109 509 109 HOH HOH . 
D 4 HOH A 110 510 110 HOH HOH . 
D 4 HOH A 111 511 111 HOH HOH . 
D 4 HOH A 112 512 112 HOH HOH . 
D 4 HOH A 113 513 113 HOH HOH . 
D 4 HOH A 114 514 114 HOH HOH . 
D 4 HOH A 115 515 115 HOH HOH . 
D 4 HOH A 116 516 116 HOH HOH . 
D 4 HOH A 117 517 117 HOH HOH . 
D 4 HOH A 118 518 118 HOH HOH . 
D 4 HOH A 119 519 119 HOH HOH . 
D 4 HOH A 120 520 120 HOH HOH . 
D 4 HOH A 121 521 121 HOH HOH . 
D 4 HOH A 122 522 123 HOH HOH . 
D 4 HOH A 123 523 124 HOH HOH . 
D 4 HOH A 124 524 125 HOH HOH . 
D 4 HOH A 125 525 126 HOH HOH . 
D 4 HOH A 126 526 127 HOH HOH . 
D 4 HOH A 127 527 128 HOH HOH . 
D 4 HOH A 128 528 129 HOH HOH . 
D 4 HOH A 129 529 130 HOH HOH . 
D 4 HOH A 130 530 131 HOH HOH . 
D 4 HOH A 131 531 132 HOH HOH . 
D 4 HOH A 132 532 133 HOH HOH . 
D 4 HOH A 133 533 134 HOH HOH . 
D 4 HOH A 134 534 135 HOH HOH . 
D 4 HOH A 135 535 136 HOH HOH . 
D 4 HOH A 136 536 137 HOH HOH . 
D 4 HOH A 137 537 138 HOH HOH . 
D 4 HOH A 138 538 139 HOH HOH . 
D 4 HOH A 139 539 140 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . C 3 8.955 -19.942 3.099 1 29.45 ? C1 GOL 302 A 1 
HETATM 2 O O1 GOL . . . C 3 8.772 -18.782 2.324 1 33.42 ? O1 GOL 302 A 1 
HETATM 3 C C2 GOL . . . C 3 10.366 -20.457 2.94 1 27.91 ? C2 GOL 302 A 1 
HETATM 4 O O2 GOL . . . C 3 10.896 -19.944 1.74 1 38.13 ? O2 GOL 302 A 1 
HETATM 5 C C3 GOL . . . C 3 11.167 -20.01 4.139 1 31.4 ? C3 GOL 302 A 1 
HETATM 6 O O3 GOL . . . C 3 12.558 -19.954 3.909 1 38.21 ? O3 GOL 302 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           302 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#