data_4DN4 # _model_server_result.job_id BGuhqL80JEfNGk9e_hNI7Q _model_server_result.datetime_utc '2024-12-26 20:26:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4dn4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1001}' # _entry.id 4DN4 # _exptl.entry_id 4DN4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 59.044 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETATE ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4DN4 _cell.length_a 136.01 _cell.length_b 136.01 _cell.length_c 109.29 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4DN4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 23 L CYS 23 1_555 A SG CYS 89 L CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf2 A SG CYS 136 L CYS 136 1_555 A SG CYS 196 L CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 B SG CYS 146 H CYS 146 1_555 B SG CYS 202 H CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 C SG CYS 11 M CYS 11 1_555 C SG CYS 36 M CYS 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf6 C SG CYS 12 M CYS 12 1_555 C SG CYS 52 M CYS 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? # _chem_comp.formula 'C2 H3 O2 -1' _chem_comp.formula_weight 59.044 _chem_comp.id ACT _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O ACT doub 1 n n C OXT ACT sing 2 n n C CH3 ACT sing 3 n n CH3 H1 ACT sing 4 n n CH3 H2 ACT sing 5 n n CH3 H3 ACT sing 6 n n # _atom_sites.entry_id 4DN4 _atom_sites.fract_transf_matrix[1][1] 0.007352 _atom_sites.fract_transf_matrix[1][2] 0.004245 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00849 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00915 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 ACT L 1 1001 1001 ACT ACT . E 4 ACT H 1 301 1002 ACT ACT . F 4 ACT H 1 302 1003 ACT ACT . G 5 GOL H 1 303 1004 GOL GOL . H 6 HOH L 1 1101 2 HOH HOH . H 6 HOH L 2 1102 9 HOH HOH . H 6 HOH L 3 1103 12 HOH HOH . H 6 HOH L 4 1104 13 HOH HOH . H 6 HOH L 5 1105 15 HOH HOH . H 6 HOH L 6 1106 18 HOH HOH . H 6 HOH L 7 1107 22 HOH HOH . H 6 HOH L 8 1108 24 HOH HOH . H 6 HOH L 9 1109 25 HOH HOH . H 6 HOH L 10 1110 26 HOH HOH . H 6 HOH L 11 1111 28 HOH HOH . H 6 HOH L 12 1112 29 HOH HOH . H 6 HOH L 13 1113 30 HOH HOH . H 6 HOH L 14 1114 32 HOH HOH . H 6 HOH L 15 1115 34 HOH HOH . H 6 HOH L 16 1116 37 HOH HOH . H 6 HOH L 17 1117 38 HOH HOH . H 6 HOH L 18 1118 41 HOH HOH . H 6 HOH L 19 1119 42 HOH HOH . H 6 HOH L 20 1120 43 HOH HOH . H 6 HOH L 21 1121 46 HOH HOH . H 6 HOH L 22 1122 48 HOH HOH . H 6 HOH L 23 1123 49 HOH HOH . H 6 HOH L 24 1124 51 HOH HOH . H 6 HOH L 25 1125 58 HOH HOH . H 6 HOH L 26 1126 61 HOH HOH . H 6 HOH L 27 1127 64 HOH HOH . H 6 HOH L 28 1128 65 HOH HOH . H 6 HOH L 29 1129 66 HOH HOH . H 6 HOH L 30 1130 69 HOH HOH . H 6 HOH L 31 1131 72 HOH HOH . H 6 HOH L 32 1132 76 HOH HOH . I 6 HOH H 1 401 3 HOH HOH . I 6 HOH H 2 402 4 HOH HOH . I 6 HOH H 3 403 5 HOH HOH . I 6 HOH H 4 404 6 HOH HOH . I 6 HOH H 5 405 7 HOH HOH . I 6 HOH H 6 406 8 HOH HOH . I 6 HOH H 7 407 11 HOH HOH . I 6 HOH H 8 408 14 HOH HOH . I 6 HOH H 9 409 16 HOH HOH . I 6 HOH H 10 410 17 HOH HOH . I 6 HOH H 11 411 19 HOH HOH . I 6 HOH H 12 412 21 HOH HOH . I 6 HOH H 13 413 23 HOH HOH . I 6 HOH H 14 414 27 HOH HOH . I 6 HOH H 15 415 31 HOH HOH . I 6 HOH H 16 416 33 HOH HOH . I 6 HOH H 17 417 36 HOH HOH . I 6 HOH H 18 418 39 HOH HOH . I 6 HOH H 19 419 40 HOH HOH . I 6 HOH H 20 420 44 HOH HOH . I 6 HOH H 21 421 45 HOH HOH . I 6 HOH H 22 422 47 HOH HOH . I 6 HOH H 23 423 50 HOH HOH . I 6 HOH H 24 424 53 HOH HOH . I 6 HOH H 25 425 54 HOH HOH . I 6 HOH H 26 426 55 HOH HOH . I 6 HOH H 27 427 56 HOH HOH . I 6 HOH H 28 428 57 HOH HOH . I 6 HOH H 29 429 59 HOH HOH . I 6 HOH H 30 430 60 HOH HOH . I 6 HOH H 31 431 62 HOH HOH . I 6 HOH H 32 432 63 HOH HOH . I 6 HOH H 33 433 67 HOH HOH . I 6 HOH H 34 434 71 HOH HOH . I 6 HOH H 35 435 74 HOH HOH . I 6 HOH H 36 436 75 HOH HOH . I 6 HOH H 37 437 77 HOH HOH . I 6 HOH H 38 438 78 HOH HOH . J 6 HOH M 1 101 1 HOH HOH . J 6 HOH M 2 102 10 HOH HOH . J 6 HOH M 3 103 20 HOH HOH . J 6 HOH M 4 104 35 HOH HOH . J 6 HOH M 5 105 52 HOH HOH . J 6 HOH M 6 106 68 HOH HOH . J 6 HOH M 7 107 70 HOH HOH . J 6 HOH M 8 108 73 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C ACT . . . D 4 2.854 46.852 -35.297 1 43.75 ? C ACT 1001 L 1 HETATM 2 O O ACT . . . D 4 2.991 45.629 -35.513 1 43.15 ? O ACT 1001 L 1 HETATM 3 O OXT ACT . . . D 4 3.896 47.544 -35.387 1 43.53 ? OXT ACT 1001 L 1 HETATM 4 C CH3 ACT . . . D 4 1.519 47.447 -34.953 1 43.44 ? CH3 ACT 1001 L 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #