data_4DN9 # _model_server_result.job_id orXEzvjNq7nbfh1m1bbU6Q _model_server_result.datetime_utc '2024-10-28 02:24:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4dn9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":201}' # _entry.id 4DN9 # _exptl.entry_id 4DN9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4DN9 _cell.length_a 60.511 _cell.length_b 60.511 _cell.length_c 135.191 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4DN9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 91 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 1 A,B,C,D,E,F,G,H 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_565 x,-y+1,-z+1/2 1 0 0 0 -1 0 0 0 -1 0 60.511 67.5955 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 22 A SER 0 1_555 A N MSE 23 A MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C MSE 23 A MSE 1 1_555 A N TYR 24 A TYR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 A C LYS 29 A LYS 7 1_555 A N MSE 30 A MSE 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 A C MSE 30 A MSE 8 1_555 A N ARG 31 A ARG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale5 A C SER 50 A SER 28 1_555 A N MSE 51 A MSE 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale6 A C MSE 51 A MSE 29 1_555 A N PRO 52 A PRO 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.357 ? covale ? covale7 B C SER 22 B SER 0 1_555 B N MSE 23 B MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale8 B C MSE 23 B MSE 1 1_555 B N TYR 24 B TYR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale9 B C LYS 29 B LYS 7 1_555 B N MSE 30 B MSE 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale10 B C MSE 30 B MSE 8 1_555 B N ARG 31 B ARG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale11 B C SER 50 B SER 28 1_555 B N MSE 51 B MSE 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale12 B C MSE 51 B MSE 29 1_555 B N PRO 52 B PRO 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.354 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4DN9 _atom_sites.fract_transf_matrix[1][1] 0.016526 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016526 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007397 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 DIO A 1 200 200 DIO DIO . D 3 SO4 A 1 201 201 SO4 SO4 . E 2 DIO B 1 200 200 DIO DIO . F 3 SO4 B 1 201 201 SO4 SO4 . G 4 HOH A 1 301 1 HOH HOH . G 4 HOH A 2 302 6 HOH HOH . G 4 HOH A 3 303 7 HOH HOH . G 4 HOH A 4 304 9 HOH HOH . G 4 HOH A 5 305 11 HOH HOH . G 4 HOH A 6 306 12 HOH HOH . G 4 HOH A 7 307 13 HOH HOH . G 4 HOH A 8 308 14 HOH HOH . G 4 HOH A 9 309 16 HOH HOH . G 4 HOH A 10 310 17 HOH HOH . G 4 HOH A 11 311 20 HOH HOH . G 4 HOH A 12 312 21 HOH HOH . G 4 HOH A 13 313 26 HOH HOH . G 4 HOH A 14 314 27 HOH HOH . G 4 HOH A 15 315 28 HOH HOH . G 4 HOH A 16 316 31 HOH HOH . G 4 HOH A 17 317 32 HOH HOH . G 4 HOH A 18 318 33 HOH HOH . G 4 HOH A 19 319 36 HOH HOH . G 4 HOH A 20 320 37 HOH HOH . G 4 HOH A 21 321 38 HOH HOH . G 4 HOH A 22 322 39 HOH HOH . G 4 HOH A 23 323 42 HOH HOH . G 4 HOH A 24 324 44 HOH HOH . G 4 HOH A 25 325 47 HOH HOH . G 4 HOH A 26 326 48 HOH HOH . G 4 HOH A 27 327 49 HOH HOH . G 4 HOH A 28 328 50 HOH HOH . G 4 HOH A 29 329 57 HOH HOH . G 4 HOH A 30 330 59 HOH HOH . G 4 HOH A 31 331 62 HOH HOH . G 4 HOH A 32 332 67 HOH HOH . G 4 HOH A 33 333 69 HOH HOH . G 4 HOH A 34 334 71 HOH HOH . G 4 HOH A 35 335 72 HOH HOH . G 4 HOH A 36 336 73 HOH HOH . G 4 HOH A 37 337 74 HOH HOH . G 4 HOH A 38 338 78 HOH HOH . G 4 HOH A 39 339 79 HOH HOH . G 4 HOH A 40 340 81 HOH HOH . G 4 HOH A 41 341 82 HOH HOH . G 4 HOH A 42 342 84 HOH HOH . G 4 HOH A 43 343 86 HOH HOH . G 4 HOH A 44 344 87 HOH HOH . G 4 HOH A 45 345 88 HOH HOH . G 4 HOH A 46 346 90 HOH HOH . G 4 HOH A 47 347 91 HOH HOH . G 4 HOH A 48 348 92 HOH HOH . G 4 HOH A 49 349 93 HOH HOH . G 4 HOH A 50 350 94 HOH HOH . G 4 HOH A 51 351 96 HOH HOH . G 4 HOH A 52 352 97 HOH HOH . G 4 HOH A 53 353 99 HOH HOH . G 4 HOH A 54 354 100 HOH HOH . G 4 HOH A 55 355 101 HOH HOH . G 4 HOH A 56 356 102 HOH HOH . G 4 HOH A 57 357 103 HOH HOH . G 4 HOH A 58 358 104 HOH HOH . G 4 HOH A 59 359 109 HOH HOH . G 4 HOH A 60 360 110 HOH HOH . G 4 HOH A 61 361 111 HOH HOH . G 4 HOH A 62 362 113 HOH HOH . G 4 HOH A 63 363 115 HOH HOH . G 4 HOH A 64 364 116 HOH HOH . G 4 HOH A 65 365 118 HOH HOH . G 4 HOH A 66 366 119 HOH HOH . G 4 HOH A 67 367 124 HOH HOH . G 4 HOH A 68 368 126 HOH HOH . H 4 HOH B 1 301 2 HOH HOH . H 4 HOH B 2 302 4 HOH HOH . H 4 HOH B 3 303 5 HOH HOH . H 4 HOH B 4 304 8 HOH HOH . H 4 HOH B 5 305 22 HOH HOH . H 4 HOH B 6 306 24 HOH HOH . H 4 HOH B 7 307 25 HOH HOH . H 4 HOH B 8 308 29 HOH HOH . H 4 HOH B 9 309 43 HOH HOH . H 4 HOH B 10 310 45 HOH HOH . H 4 HOH B 11 311 46 HOH HOH . H 4 HOH B 12 312 53 HOH HOH . H 4 HOH B 13 313 54 HOH HOH . H 4 HOH B 14 314 56 HOH HOH . H 4 HOH B 15 315 58 HOH HOH . H 4 HOH B 16 316 63 HOH HOH . H 4 HOH B 17 317 68 HOH HOH . H 4 HOH B 18 318 70 HOH HOH . H 4 HOH B 19 319 80 HOH HOH . H 4 HOH B 20 320 83 HOH HOH . H 4 HOH B 21 321 85 HOH HOH . H 4 HOH B 22 322 89 HOH HOH . H 4 HOH B 23 323 98 HOH HOH . H 4 HOH B 24 324 105 HOH HOH . H 4 HOH B 25 325 106 HOH HOH . H 4 HOH B 26 326 107 HOH HOH . H 4 HOH B 27 327 108 HOH HOH . H 4 HOH B 28 328 112 HOH HOH . H 4 HOH B 29 329 120 HOH HOH . H 4 HOH B 30 330 122 HOH HOH . H 4 HOH B 31 331 123 HOH HOH . H 4 HOH B 32 332 125 HOH HOH . H 4 HOH B 33 333 127 HOH HOH . H 4 HOH B 34 334 128 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . F 3 54.851 51.842 24.312 0.5 53.43 ? S SO4 201 B 1 HETATM 2 O O1 SO4 . . . F 3 55.164 53.247 24.644 0.5 49.27 ? O1 SO4 201 B 1 HETATM 3 O O2 SO4 . . . F 3 55.5 51.505 23.026 0.5 40.25 ? O2 SO4 201 B 1 HETATM 4 O O3 SO4 . . . F 3 55.359 50.953 25.381 0.5 32.08 ? O3 SO4 201 B 1 HETATM 5 O O4 SO4 . . . F 3 53.382 51.676 24.203 0.5 48.43 ? O4 SO4 201 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #