data_4DNC
#
_model_server_result.job_id            8zo8XWtqKty-SLBXzmKR2A 
_model_server_result.datetime_utc      '2025-08-31 16:08:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4dnc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":501}' 
#
_entry.id    4DNC 
#
_exptl.entry_id    4DNC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              65.409 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ZINC ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          111.05 
_cell.angle_gamma         90 
_cell.entry_id            4DNC 
_cell.length_a            64.801 
_cell.length_b            111.518 
_cell.length_c            66.751 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4DNC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA tetrameric 4 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,G,I 1 1 
B,D,F,H,J 2 1 
A,B,C,D,E,F,G,H,I,J 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C HIS 104 A HIS 273 1_555 A N ALY 105 A ALY 274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.306 ? 
covale ? covale2 A C ALY 105 A ALY 274 1_555 A N THR 106 A THR 275 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale3 B C HIS 104 B HIS 273 1_555 B N ALY 105 B ALY 274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.285 ? 
covale ? covale4 B C ALY 105 B ALY 274 1_555 B N THR 106 B THR 275 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.275 ? 
metalc ? metalc1 A SG CYS 41 A CYS 210 1_555 E ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? 
metalc ? metalc2 A SG CYS 44 A CYS 213 1_555 E ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? 
metalc ? metalc3 A NE2 HIS 57 A HIS 226 1_555 E ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? 
metalc ? metalc4 A SG CYS 61 A CYS 230 1_555 E ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? 
metalc ? metalc5 B SG CYS 41 B CYS 210 1_555 F ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? 
metalc ? metalc6 B SG CYS 44 B CYS 213 1_555 F ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? 
metalc ? metalc7 B NE2 HIS 57 B HIS 226 1_555 F ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? 
metalc ? metalc8 B SG CYS 61 B CYS 230 1_555 F ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? 
#
_chem_comp.formula           'Zn 2' 
_chem_comp.formula_weight    65.409 
_chem_comp.id                ZN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ZINC ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4DNC 
_atom_sites.fract_transf_matrix[1][1]    0.015432 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005939 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008967 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016052 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 ZN A 1 501 1 ZN ZN . 
F 3 ZN B 1 501 2 ZN ZN . 
G 4 HOH A 1 601 1 HOH TIP . 
G 4 HOH A 2 602 3 HOH TIP . 
G 4 HOH A 3 603 6 HOH TIP . 
G 4 HOH A 4 604 8 HOH TIP . 
G 4 HOH A 5 605 10 HOH TIP . 
G 4 HOH A 6 606 12 HOH TIP . 
G 4 HOH A 7 607 15 HOH TIP . 
G 4 HOH A 8 608 17 HOH TIP . 
G 4 HOH A 9 609 20 HOH TIP . 
G 4 HOH A 10 610 21 HOH TIP . 
G 4 HOH A 11 611 23 HOH TIP . 
G 4 HOH A 12 612 26 HOH TIP . 
G 4 HOH A 13 613 29 HOH TIP . 
G 4 HOH A 14 614 30 HOH TIP . 
G 4 HOH A 15 615 31 HOH TIP . 
G 4 HOH A 16 616 36 HOH TIP . 
G 4 HOH A 17 617 38 HOH TIP . 
G 4 HOH A 18 618 46 HOH TIP . 
G 4 HOH A 19 619 48 HOH TIP . 
G 4 HOH A 20 620 50 HOH TIP . 
G 4 HOH A 21 621 52 HOH TIP . 
G 4 HOH A 22 622 55 HOH TIP . 
G 4 HOH A 23 623 58 HOH TIP . 
G 4 HOH A 24 624 59 HOH TIP . 
G 4 HOH A 25 625 61 HOH TIP . 
G 4 HOH A 26 626 63 HOH TIP . 
G 4 HOH A 27 627 68 HOH TIP . 
G 4 HOH A 28 628 69 HOH TIP . 
G 4 HOH A 29 629 70 HOH TIP . 
G 4 HOH A 30 630 71 HOH TIP . 
G 4 HOH A 31 631 72 HOH TIP . 
G 4 HOH A 32 632 73 HOH TIP . 
G 4 HOH A 33 633 74 HOH TIP . 
G 4 HOH A 34 634 79 HOH TIP . 
G 4 HOH A 35 635 80 HOH TIP . 
G 4 HOH A 36 636 81 HOH TIP . 
G 4 HOH A 37 637 82 HOH TIP . 
G 4 HOH A 38 638 83 HOH TIP . 
G 4 HOH A 39 639 84 HOH TIP . 
G 4 HOH A 40 640 87 HOH TIP . 
G 4 HOH A 41 641 89 HOH TIP . 
G 4 HOH A 42 642 90 HOH TIP . 
G 4 HOH A 43 643 91 HOH TIP . 
G 4 HOH A 44 644 94 HOH TIP . 
G 4 HOH A 45 645 95 HOH TIP . 
G 4 HOH A 46 646 97 HOH TIP . 
G 4 HOH A 47 647 98 HOH TIP . 
G 4 HOH A 48 648 99 HOH TIP . 
G 4 HOH A 49 649 100 HOH TIP . 
G 4 HOH A 50 650 101 HOH TIP . 
G 4 HOH A 51 651 102 HOH TIP . 
G 4 HOH A 52 652 103 HOH TIP . 
G 4 HOH A 53 653 106 HOH TIP . 
G 4 HOH A 54 654 108 HOH TIP . 
G 4 HOH A 55 655 109 HOH TIP . 
G 4 HOH A 56 656 112 HOH TIP . 
G 4 HOH A 57 657 115 HOH TIP . 
G 4 HOH A 58 658 118 HOH TIP . 
G 4 HOH A 59 659 120 HOH TIP . 
G 4 HOH A 60 660 122 HOH TIP . 
G 4 HOH A 61 661 123 HOH TIP . 
G 4 HOH A 62 662 124 HOH TIP . 
G 4 HOH A 63 663 125 HOH TIP . 
G 4 HOH A 64 664 131 HOH TIP . 
G 4 HOH A 65 665 133 HOH TIP . 
G 4 HOH A 66 666 134 HOH TIP . 
G 4 HOH A 67 667 137 HOH TIP . 
G 4 HOH A 68 668 139 HOH TIP . 
G 4 HOH A 69 669 141 HOH TIP . 
G 4 HOH A 70 670 142 HOH TIP . 
G 4 HOH A 71 671 144 HOH TIP . 
G 4 HOH A 72 672 146 HOH TIP . 
G 4 HOH A 73 673 148 HOH TIP . 
G 4 HOH A 74 674 152 HOH TIP . 
H 4 HOH B 1 601 2 HOH TIP . 
H 4 HOH B 2 602 4 HOH TIP . 
H 4 HOH B 3 603 7 HOH TIP . 
H 4 HOH B 4 604 11 HOH TIP . 
H 4 HOH B 5 605 13 HOH TIP . 
H 4 HOH B 6 606 14 HOH TIP . 
H 4 HOH B 7 607 18 HOH TIP . 
H 4 HOH B 8 608 19 HOH TIP . 
H 4 HOH B 9 609 22 HOH TIP . 
H 4 HOH B 10 610 24 HOH TIP . 
H 4 HOH B 11 611 25 HOH TIP . 
H 4 HOH B 12 612 27 HOH TIP . 
H 4 HOH B 13 613 28 HOH TIP . 
H 4 HOH B 14 614 32 HOH TIP . 
H 4 HOH B 15 615 33 HOH TIP . 
H 4 HOH B 16 616 34 HOH TIP . 
H 4 HOH B 17 617 35 HOH TIP . 
H 4 HOH B 18 618 37 HOH TIP . 
H 4 HOH B 19 619 39 HOH TIP . 
H 4 HOH B 20 620 40 HOH TIP . 
H 4 HOH B 21 621 41 HOH TIP . 
H 4 HOH B 22 622 42 HOH TIP . 
H 4 HOH B 23 623 43 HOH TIP . 
H 4 HOH B 24 624 45 HOH TIP . 
H 4 HOH B 25 625 47 HOH TIP . 
H 4 HOH B 26 626 49 HOH TIP . 
H 4 HOH B 27 627 53 HOH TIP . 
H 4 HOH B 28 628 54 HOH TIP . 
H 4 HOH B 29 629 56 HOH TIP . 
H 4 HOH B 30 630 57 HOH TIP . 
H 4 HOH B 31 631 60 HOH TIP . 
H 4 HOH B 32 632 62 HOH TIP . 
H 4 HOH B 33 633 64 HOH TIP . 
H 4 HOH B 34 634 65 HOH TIP . 
H 4 HOH B 35 635 66 HOH TIP . 
H 4 HOH B 36 636 75 HOH TIP . 
H 4 HOH B 37 637 76 HOH TIP . 
H 4 HOH B 38 638 77 HOH TIP . 
H 4 HOH B 39 639 78 HOH TIP . 
H 4 HOH B 40 640 85 HOH TIP . 
H 4 HOH B 41 641 86 HOH TIP . 
H 4 HOH B 42 642 88 HOH TIP . 
H 4 HOH B 43 643 93 HOH TIP . 
H 4 HOH B 44 644 96 HOH TIP . 
H 4 HOH B 45 645 104 HOH TIP . 
H 4 HOH B 46 646 105 HOH TIP . 
H 4 HOH B 47 647 111 HOH TIP . 
H 4 HOH B 48 648 113 HOH TIP . 
H 4 HOH B 49 649 114 HOH TIP . 
H 4 HOH B 50 650 119 HOH TIP . 
H 4 HOH B 51 651 121 HOH TIP . 
H 4 HOH B 52 652 126 HOH TIP . 
H 4 HOH B 53 653 127 HOH TIP . 
H 4 HOH B 54 654 128 HOH TIP . 
H 4 HOH B 55 655 129 HOH TIP . 
H 4 HOH B 56 656 132 HOH TIP . 
H 4 HOH B 57 657 136 HOH TIP . 
H 4 HOH B 58 658 138 HOH TIP . 
H 4 HOH B 59 659 149 HOH TIP . 
H 4 HOH B 60 660 150 HOH TIP . 
H 4 HOH B 61 661 151 HOH TIP . 
H 4 HOH B 62 662 153 HOH TIP . 
I 4 HOH D 1 601 16 HOH TIP . 
I 4 HOH D 2 602 116 HOH TIP . 
I 4 HOH D 3 603 117 HOH TIP . 
I 4 HOH D 4 604 140 HOH TIP . 
I 4 HOH D 5 605 145 HOH TIP . 
J 4 HOH E 1 601 5 HOH TIP . 
J 4 HOH E 2 602 9 HOH TIP . 
J 4 HOH E 3 603 51 HOH TIP . 
J 4 HOH E 4 604 67 HOH TIP . 
J 4 HOH E 5 605 92 HOH TIP . 
J 4 HOH E 6 606 107 HOH TIP . 
J 4 HOH E 7 607 130 HOH TIP . 
J 4 HOH E 8 608 135 HOH TIP . 
J 4 HOH E 9 609 143 HOH TIP . 
J 4 HOH E 10 610 147 HOH TIP . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           ZN 
_atom_site.label_atom_id         ZN 
_atom_site.label_comp_id         ZN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         E 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               -8.249 
_atom_site.Cartn_y               -6.982 
_atom_site.Cartn_z               28.214 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        41.42 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          ZN 
_atom_site.auth_comp_id          ZN 
_atom_site.auth_seq_id           501 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              310 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           689 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           1 
#