data_4DNE
#
_model_server_result.job_id            a1xbPB94pMqFlmAzhH61jg 
_model_server_result.datetime_utc      '2024-11-17 06:37:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4dne 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":201}' 
#
_entry.id    4DNE 
#
_exptl.entry_id    4DNE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              214.262 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '6-(5-METHYL-2-OXO-IMIDAZOLIDIN-4-YL)-HEXANOIC ACID' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4DNE 
_cell.length_a            46.72 
_cell.length_b            93.782 
_cell.length_c            104.413 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4DNE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 F N N 
#
_chem_comp.formula           'C10 H18 N2 O3' 
_chem_comp.formula_weight    214.262 
_chem_comp.id                DTB 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '6-(5-METHYL-2-OXO-IMIDAZOLIDIN-4-YL)-HEXANOIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     D-DESTHIOBIOTIN 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CN O DTB doub 70 n n 
CN N2 DTB sing 71 n n 
CN N1 DTB sing 72 n n 
N2 CR DTB sing 73 n n 
N2 HN2 DTB sing 74 n n 
CR CS DTB sing 75 n n 
CR CE DTB sing 76 n n 
CR HCR DTB sing 77 n n 
CS N1 DTB sing 78 n n 
CS CT DTB sing 79 n n 
CS HCS DTB sing 80 n n 
N1 HN1 DTB sing 81 n n 
CT HCT1 DTB sing 82 n n 
CT HCT2 DTB sing 83 n n 
CT HCT3 DTB sing 84 n n 
CE CD DTB sing 85 n n 
CE HCE1 DTB sing 86 n n 
CE HCE2 DTB sing 87 n n 
CD CG DTB sing 88 n n 
CD HCD1 DTB sing 89 n n 
CD HCD2 DTB sing 90 n n 
CG CB DTB sing 91 n n 
CG HCG1 DTB sing 92 n n 
CG HCG2 DTB sing 93 n n 
CB CA DTB sing 94 n n 
CB HCB1 DTB sing 95 n n 
CB HCB2 DTB sing 96 n n 
CA C DTB sing 97 n n 
CA HCA1 DTB sing 98 n n 
CA HCA2 DTB sing 99 n n 
C OI1 DTB doub 100 n n 
C OI2 DTB sing 101 n n 
OI2 HOI2 DTB sing 102 n n 
#
_atom_sites.entry_id                     4DNE 
_atom_sites.fract_transf_matrix[1][1]    0.021404 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010663 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009577 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 DTB A 1 201 3 DTB DTB . 
D 3 SO4 A 1 202 1 SO4 SO4 . 
E 3 SO4 A 1 203 6 SO4 SO4 . 
F 2 DTB B 1 201 1 DTB DTB . 
G 3 SO4 B 1 202 2 SO4 SO4 . 
H 3 SO4 B 1 203 3 SO4 SO4 . 
I 3 SO4 B 1 204 4 SO4 SO4 . 
J 3 SO4 B 1 205 5 SO4 SO4 . 
K 4 HOH A 1 301 2 HOH HOH . 
K 4 HOH A 2 302 5 HOH HOH . 
K 4 HOH A 3 303 6 HOH HOH . 
K 4 HOH A 4 304 7 HOH HOH . 
K 4 HOH A 5 305 15 HOH HOH . 
K 4 HOH A 6 306 16 HOH HOH . 
K 4 HOH A 7 307 18 HOH HOH . 
K 4 HOH A 8 308 22 HOH HOH . 
K 4 HOH A 9 309 23 HOH HOH . 
K 4 HOH A 10 310 24 HOH HOH . 
K 4 HOH A 11 311 25 HOH HOH . 
K 4 HOH A 12 312 34 HOH HOH . 
K 4 HOH A 13 313 38 HOH HOH . 
K 4 HOH A 14 314 39 HOH HOH . 
K 4 HOH A 15 315 40 HOH HOH . 
K 4 HOH A 16 316 41 HOH HOH . 
K 4 HOH A 17 317 42 HOH HOH . 
K 4 HOH A 18 318 43 HOH HOH . 
K 4 HOH A 19 319 44 HOH HOH . 
K 4 HOH A 20 320 45 HOH HOH . 
K 4 HOH A 21 321 46 HOH HOH . 
K 4 HOH A 22 322 47 HOH HOH . 
K 4 HOH A 23 323 53 HOH HOH . 
K 4 HOH A 24 324 54 HOH HOH . 
K 4 HOH A 25 325 56 HOH HOH . 
K 4 HOH A 26 326 58 HOH HOH . 
K 4 HOH A 27 327 59 HOH HOH . 
K 4 HOH A 28 328 60 HOH HOH . 
K 4 HOH A 29 329 63 HOH HOH . 
K 4 HOH A 30 330 64 HOH HOH . 
K 4 HOH A 31 331 65 HOH HOH . 
K 4 HOH A 32 332 70 HOH HOH . 
K 4 HOH A 33 333 71 HOH HOH . 
K 4 HOH A 34 334 74 HOH HOH . 
K 4 HOH A 35 335 75 HOH HOH . 
K 4 HOH A 36 336 76 HOH HOH . 
K 4 HOH A 37 337 77 HOH HOH . 
K 4 HOH A 38 338 78 HOH HOH . 
K 4 HOH A 39 339 80 HOH HOH . 
K 4 HOH A 40 340 82 HOH HOH . 
K 4 HOH A 41 341 84 HOH HOH . 
K 4 HOH A 42 342 98 HOH HOH . 
K 4 HOH A 43 343 99 HOH HOH . 
K 4 HOH A 44 344 102 HOH HOH . 
L 4 HOH B 1 301 1 HOH HOH . 
L 4 HOH B 2 302 3 HOH HOH . 
L 4 HOH B 3 303 4 HOH HOH . 
L 4 HOH B 4 304 8 HOH HOH . 
L 4 HOH B 5 305 9 HOH HOH . 
L 4 HOH B 6 306 11 HOH HOH . 
L 4 HOH B 7 307 12 HOH HOH . 
L 4 HOH B 8 308 13 HOH HOH . 
L 4 HOH B 9 309 14 HOH HOH . 
L 4 HOH B 10 310 17 HOH HOH . 
L 4 HOH B 11 311 19 HOH HOH . 
L 4 HOH B 12 312 20 HOH HOH . 
L 4 HOH B 13 313 26 HOH HOH . 
L 4 HOH B 14 314 27 HOH HOH . 
L 4 HOH B 15 315 28 HOH HOH . 
L 4 HOH B 16 316 29 HOH HOH . 
L 4 HOH B 17 317 30 HOH HOH . 
L 4 HOH B 18 318 31 HOH HOH . 
L 4 HOH B 19 319 32 HOH HOH . 
L 4 HOH B 20 320 33 HOH HOH . 
L 4 HOH B 21 321 35 HOH HOH . 
L 4 HOH B 22 322 36 HOH HOH . 
L 4 HOH B 23 323 37 HOH HOH . 
L 4 HOH B 24 324 48 HOH HOH . 
L 4 HOH B 25 325 49 HOH HOH . 
L 4 HOH B 26 326 50 HOH HOH . 
L 4 HOH B 27 327 51 HOH HOH . 
L 4 HOH B 28 328 55 HOH HOH . 
L 4 HOH B 29 329 61 HOH HOH . 
L 4 HOH B 30 330 62 HOH HOH . 
L 4 HOH B 31 331 66 HOH HOH . 
L 4 HOH B 32 332 67 HOH HOH . 
L 4 HOH B 33 333 68 HOH HOH . 
L 4 HOH B 34 334 85 HOH HOH . 
L 4 HOH B 35 335 86 HOH HOH . 
L 4 HOH B 36 336 87 HOH HOH . 
L 4 HOH B 37 337 88 HOH HOH . 
L 4 HOH B 38 338 91 HOH HOH . 
L 4 HOH B 39 339 92 HOH HOH . 
L 4 HOH B 40 340 93 HOH HOH . 
L 4 HOH B 41 341 94 HOH HOH . 
L 4 HOH B 42 342 95 HOH HOH . 
L 4 HOH B 43 343 96 HOH HOH . 
L 4 HOH B 44 344 97 HOH HOH . 
L 4 HOH B 45 345 100 HOH HOH . 
L 4 HOH B 46 346 101 HOH HOH . 
L 4 HOH B 47 347 103 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CN DTB . . . C 2 -4.228 35.141 11.807 1 11.42 ? CN DTB 201 A 1 
HETATM 2 O O DTB . . . C 2 -3.748 36.216 12.408 1 10.93 ? O DTB 201 A 1 
HETATM 3 N N2 DTB . . . C 2 -5.132 34.38 12.376 1 8.82 ? N2 DTB 201 A 1 
HETATM 4 C CR DTB . . . C 2 -5.704 33.48 11.395 1 9.44 ? CR DTB 201 A 1 
HETATM 5 C CS DTB . . . C 2 -4.621 33.521 10.299 1 8.75 ? CS DTB 201 A 1 
HETATM 6 N N1 DTB . . . C 2 -3.895 34.735 10.653 1 8.92 ? N1 DTB 201 A 1 
HETATM 7 C CT DTB . . . C 2 -3.666 32.319 10.282 1 7.29 ? CT DTB 201 A 1 
HETATM 8 C CE DTB . . . C 2 -5.901 32.129 12.1 1 9.69 ? CE DTB 201 A 1 
HETATM 9 C CD DTB . . . C 2 -7.039 32.182 13.134 1 8.8 ? CD DTB 201 A 1 
HETATM 10 C CG DTB . . . C 2 -7.571 30.787 13.441 1 9.87 ? CG DTB 201 A 1 
HETATM 11 C CB DTB . . . C 2 -8.342 30.751 14.763 1 11.11 ? CB DTB 201 A 1 
HETATM 12 C CA DTB . . . C 2 -8.831 29.341 15.128 1 12.12 ? CA DTB 201 A 1 
HETATM 13 C C DTB . . . C 2 -9.797 28.762 14.115 1 13.51 ? C DTB 201 A 1 
HETATM 14 O OI1 DTB . . . C 2 -10.708 29.486 13.666 1 11.92 ? OI1 DTB 201 A 1 
HETATM 15 O OI2 DTB . . . C 2 -9.625 27.576 13.752 1 12.74 ? OI2 DTB 201 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           302 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           15 
#