data_4DNH
#
_model_server_result.job_id            JEdlWC3kFpQj_j7RjlfJBg 
_model_server_result.datetime_utc      '2024-11-05 00:35:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4dnh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":500}' 
#
_entry.id    4DNH 
#
_exptl.entry_id    4DNH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4DNH 
_cell.length_a            75.291 
_cell.length_b            75.291 
_cell.length_c            139.518 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4DNH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C SER 81 A SER 82 1_555 A N MSE 82 A MSE 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? 
covale ? covale2 A C MSE 82 A MSE 83 1_555 A N ASP 83 A ASP 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale3 A C GLY 88 A GLY 89 1_555 A N MSE 89 A MSE 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale4 A C MSE 89 A MSE 90 1_555 A N GLY 90 A GLY 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale5 A C LEU 155 A LEU 156 1_555 A N MSE 156 A MSE 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale6 A C MSE 156 A MSE 157 1_555 A N ALA 157 A ALA 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale7 A C GLU 193 A GLU 194 1_555 A N MSE 194 A MSE 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale8 A C MSE 194 A MSE 195 1_555 A N PHE 195 A PHE 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale9 A C HIS 208 A HIS 209 1_555 A N MSE 209 A MSE 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale10 A C MSE 209 A MSE 210 1_555 A N ALA 210 A ALA 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale11 A C ALA 211 A ALA 212 1_555 A N MSE 212 A MSE 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale12 A C MSE 212 A MSE 213 1_555 A N LYS 213 A LYS 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale13 A C VAL 241 A VAL 242 1_555 A N MSE 242 A MSE 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale14 A C MSE 242 A MSE 243 1_555 A N ARG 243 A ARG 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale15 A C ARG 251 A ARG 252 1_555 A N MSE 252 A MSE 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale16 A C MSE 252 A MSE 253 1_555 A N TYR 253 A TYR 254 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale17 A C VAL 341 A VAL 342 1_555 A N MSE 342 A MSE 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale18 A C MSE 342 A MSE 343 1_555 A N ILE 343 A ILE 344 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale19 A C ARG 377 A ARG 378 1_555 A N MSE 378 A MSE 379 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale20 A C MSE 378 A MSE 379 1_555 A N ARG 379 A ARG 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale21 A C ALA 383 A ALA 384 1_555 A N MSE 384 A MSE 385 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale22 A C MSE 384 A MSE 385 1_555 A N HIS 385 A HIS 386 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     4DNH 
_atom_sites.fract_transf_matrix[1][1]    0.013282 
_atom_sites.fract_transf_matrix[1][2]    0.007668 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015337 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007168 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GOL A 1 500 500 GOL GOL . 
C 2 GOL A 1 501 501 GOL GOL . 
D 3 HOH A 1 601 32 HOH HOH . 
D 3 HOH A 2 602 34 HOH HOH . 
D 3 HOH A 3 603 35 HOH HOH . 
D 3 HOH A 4 604 36 HOH HOH . 
D 3 HOH A 5 605 40 HOH HOH . 
D 3 HOH A 6 606 45 HOH HOH . 
D 3 HOH A 7 607 48 HOH HOH . 
D 3 HOH A 8 608 51 HOH HOH . 
D 3 HOH A 9 609 54 HOH HOH . 
D 3 HOH A 10 610 55 HOH HOH . 
D 3 HOH A 11 611 57 HOH HOH . 
D 3 HOH A 12 612 58 HOH HOH . 
D 3 HOH A 13 613 59 HOH HOH . 
D 3 HOH A 14 614 61 HOH HOH . 
D 3 HOH A 15 615 63 HOH HOH . 
D 3 HOH A 16 616 66 HOH HOH . 
D 3 HOH A 17 617 69 HOH HOH . 
D 3 HOH A 18 618 70 HOH HOH . 
D 3 HOH A 19 619 73 HOH HOH . 
D 3 HOH A 20 620 76 HOH HOH . 
D 3 HOH A 21 621 77 HOH HOH . 
D 3 HOH A 22 622 78 HOH HOH . 
D 3 HOH A 23 623 79 HOH HOH . 
D 3 HOH A 24 624 82 HOH HOH . 
D 3 HOH A 25 625 85 HOH HOH . 
D 3 HOH A 26 626 86 HOH HOH . 
D 3 HOH A 27 627 88 HOH HOH . 
D 3 HOH A 28 628 89 HOH HOH . 
D 3 HOH A 29 629 90 HOH HOH . 
D 3 HOH A 30 630 92 HOH HOH . 
D 3 HOH A 31 631 93 HOH HOH . 
D 3 HOH A 32 632 95 HOH HOH . 
D 3 HOH A 33 633 96 HOH HOH . 
D 3 HOH A 34 634 97 HOH HOH . 
D 3 HOH A 35 635 98 HOH HOH . 
D 3 HOH A 36 636 99 HOH HOH . 
D 3 HOH A 37 637 100 HOH HOH . 
D 3 HOH A 38 638 101 HOH HOH . 
D 3 HOH A 39 639 102 HOH HOH . 
D 3 HOH A 40 640 103 HOH HOH . 
D 3 HOH A 41 641 104 HOH HOH . 
D 3 HOH A 42 642 105 HOH HOH . 
D 3 HOH A 43 643 106 HOH HOH . 
D 3 HOH A 44 644 107 HOH HOH . 
D 3 HOH A 45 645 108 HOH HOH . 
D 3 HOH A 46 646 109 HOH HOH . 
D 3 HOH A 47 647 110 HOH HOH . 
D 3 HOH A 48 648 111 HOH HOH . 
D 3 HOH A 49 649 112 HOH HOH . 
D 3 HOH A 50 650 113 HOH HOH . 
D 3 HOH A 51 651 114 HOH HOH . 
D 3 HOH A 52 652 115 HOH HOH . 
D 3 HOH A 53 653 116 HOH HOH . 
D 3 HOH A 54 654 117 HOH HOH . 
D 3 HOH A 55 655 118 HOH HOH . 
D 3 HOH A 56 656 119 HOH HOH . 
D 3 HOH A 57 657 120 HOH HOH . 
D 3 HOH A 58 658 121 HOH HOH . 
D 3 HOH A 59 659 122 HOH HOH . 
D 3 HOH A 60 660 123 HOH HOH . 
D 3 HOH A 61 661 124 HOH HOH . 
D 3 HOH A 62 662 125 HOH HOH . 
D 3 HOH A 63 663 127 HOH HOH . 
D 3 HOH A 64 664 128 HOH HOH . 
D 3 HOH A 65 665 129 HOH HOH . 
D 3 HOH A 66 666 130 HOH HOH . 
D 3 HOH A 67 667 131 HOH HOH . 
D 3 HOH A 68 668 132 HOH HOH . 
D 3 HOH A 69 669 133 HOH HOH . 
D 3 HOH A 70 670 134 HOH HOH . 
D 3 HOH A 71 671 135 HOH HOH . 
D 3 HOH A 72 672 136 HOH HOH . 
D 3 HOH A 73 673 137 HOH HOH . 
D 3 HOH A 74 674 138 HOH HOH . 
D 3 HOH A 75 675 139 HOH HOH . 
D 3 HOH A 76 676 140 HOH HOH . 
D 3 HOH A 77 677 141 HOH HOH . 
D 3 HOH A 78 678 142 HOH HOH . 
D 3 HOH A 79 679 144 HOH HOH . 
D 3 HOH A 80 680 145 HOH HOH . 
D 3 HOH A 81 681 146 HOH HOH . 
D 3 HOH A 82 682 147 HOH HOH . 
D 3 HOH A 83 683 148 HOH HOH . 
D 3 HOH A 84 684 149 HOH HOH . 
D 3 HOH A 85 685 150 HOH HOH . 
D 3 HOH A 86 686 151 HOH HOH . 
D 3 HOH A 87 687 152 HOH HOH . 
D 3 HOH A 88 688 153 HOH HOH . 
D 3 HOH A 89 689 154 HOH HOH . 
D 3 HOH A 90 690 155 HOH HOH . 
D 3 HOH A 91 691 156 HOH HOH . 
D 3 HOH A 92 692 157 HOH HOH . 
D 3 HOH A 93 693 158 HOH HOH . 
D 3 HOH A 94 694 159 HOH HOH . 
D 3 HOH A 95 695 160 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . B 2 36.487 4.921 4.734 1 42.66 ? C1 GOL 500 A 1 
HETATM 2 O O1 GOL . . . B 2 35.939 6.202 4.416 1 43.89 ? O1 GOL 500 A 1 
HETATM 3 C C2 GOL . . . B 2 37.482 4.533 3.651 1 42.58 ? C2 GOL 500 A 1 
HETATM 4 O O2 GOL . . . B 2 36.841 4.576 2.359 1 42.13 ? O2 GOL 500 A 1 
HETATM 5 C C3 GOL . . . B 2 38.681 5.473 3.705 1 41.22 ? C3 GOL 500 A 1 
HETATM 6 O O3 GOL . . . B 2 39.429 5.358 2.487 1 41.63 ? O3 GOL 500 A 1 
#
_model_server_stats.io_time_ms              61 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           264 
_model_server_stats.encode_time_ms          21 
_model_server_stats.element_count           6 
#