data_4DNL # _model_server_result.job_id QxufSMrFZdx9rb5Du8wWNw _model_server_result.datetime_utc '2024-12-27 09:40:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4dnl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":300}' # _entry.id 4DNL # _exptl.entry_id 4DNL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4DNL _cell.length_a 58.035 _cell.length_b 58.035 _cell.length_c 88.714 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4DNL _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PRO 32 A PRO 185 1_555 A N MSE 33 A MSE 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale2 A C MSE 33 A MSE 186 1_555 A N ASP 34 A ASP 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale3 A C PHE 102 A PHE 255 1_555 A N MSE 103 A MSE 256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 A C MSE 103 A MSE 256 1_555 A N GLY 104 A GLY 257 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 A C LEU 113 A LEU 266 1_555 A N MSE 114 A MSE 267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale6 A C MSE 114 A MSE 267 1_555 A N LYS 115 A LYS 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale7 A C LYS 115 A LYS 268 1_555 A N MSE 116 A MSE 269 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale8 A C MSE 116 A MSE 269 1_555 A N PRO 117 A PRO 270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.356 ? metalc ? metalc1 A OD2 ASP 34 A ASP 187 1_555 B NA NA . A NA 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.633 ? metalc ? metalc2 A OD1 ASP 34 A ASP 187 1_555 B NA NA . A NA 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.775 ? metalc ? metalc3 A OD2 ASP 40 A ASP 193 1_555 B NA NA . A NA 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? metalc ? metalc4 A OD1 ASP 93 A ASP 246 1_555 B NA NA . A NA 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? metalc ? metalc5 A O TRP 94 A TRP 247 1_555 B NA NA . A NA 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? metalc ? metalc6 A OD1 ASP 95 A ASP 248 1_555 B NA NA . A NA 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? metalc ? metalc7 B NA NA . A NA 300 1_555 C O HOH . A HOH 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.131 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4DNL _atom_sites.fract_transf_matrix[1][1] 0.017231 _atom_sites.fract_transf_matrix[1][2] 0.009948 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019897 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011272 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 300 300 NA NA . C 3 HOH A 1 401 301 HOH HOH . C 3 HOH A 2 402 302 HOH HOH . C 3 HOH A 3 403 303 HOH HOH . C 3 HOH A 4 404 304 HOH HOH . C 3 HOH A 5 405 305 HOH HOH . C 3 HOH A 6 406 306 HOH HOH . C 3 HOH A 7 407 307 HOH HOH . C 3 HOH A 8 408 308 HOH HOH . C 3 HOH A 9 409 309 HOH HOH . C 3 HOH A 10 410 310 HOH HOH . C 3 HOH A 11 411 311 HOH HOH . C 3 HOH A 12 412 312 HOH HOH . C 3 HOH A 13 413 313 HOH HOH . C 3 HOH A 14 414 314 HOH HOH . C 3 HOH A 15 415 315 HOH HOH . C 3 HOH A 16 416 316 HOH HOH . C 3 HOH A 17 417 317 HOH HOH . C 3 HOH A 18 418 318 HOH HOH . C 3 HOH A 19 419 319 HOH HOH . C 3 HOH A 20 420 320 HOH HOH . C 3 HOH A 21 421 321 HOH HOH . C 3 HOH A 22 422 322 HOH HOH . C 3 HOH A 23 423 323 HOH HOH . C 3 HOH A 24 424 324 HOH HOH . C 3 HOH A 25 425 325 HOH HOH . C 3 HOH A 26 426 326 HOH HOH . C 3 HOH A 27 427 327 HOH HOH . C 3 HOH A 28 428 328 HOH HOH . C 3 HOH A 29 429 329 HOH HOH . C 3 HOH A 30 430 330 HOH HOH . C 3 HOH A 31 431 331 HOH HOH . C 3 HOH A 32 432 332 HOH HOH . C 3 HOH A 33 433 333 HOH HOH . C 3 HOH A 34 434 334 HOH HOH . C 3 HOH A 35 435 335 HOH HOH . C 3 HOH A 36 436 336 HOH HOH . C 3 HOH A 37 437 337 HOH HOH . C 3 HOH A 38 438 338 HOH HOH . C 3 HOH A 39 439 339 HOH HOH . C 3 HOH A 40 440 340 HOH HOH . C 3 HOH A 41 441 341 HOH HOH . C 3 HOH A 42 442 342 HOH HOH . C 3 HOH A 43 443 343 HOH HOH . C 3 HOH A 44 444 344 HOH HOH . C 3 HOH A 45 445 345 HOH HOH . C 3 HOH A 46 446 346 HOH HOH . C 3 HOH A 47 447 347 HOH HOH . C 3 HOH A 48 448 348 HOH HOH . C 3 HOH A 49 449 349 HOH HOH . C 3 HOH A 50 450 350 HOH HOH . C 3 HOH A 51 451 351 HOH HOH . C 3 HOH A 52 452 352 HOH HOH . C 3 HOH A 53 453 353 HOH HOH . C 3 HOH A 54 454 354 HOH HOH . C 3 HOH A 55 455 355 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 16.275 _atom_site.Cartn_y 21.709 _atom_site.Cartn_z 9.384 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 56.68 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 300 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #