data_4DNP # _model_server_result.job_id reIXfOC9qOPIhcWLMr4oJg _model_server_result.datetime_utc '2024-11-16 13:34:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4dnp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 4DNP # _exptl.entry_id 4DNP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4DNP _cell.length_a 129.26 _cell.length_b 129.26 _cell.length_c 129.26 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4DNP _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D 1 1 A,B,C,D 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_545 x,-y-1,-z 1 0 0 0 -1 0 0 0 -1 0 -129.26 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 146 n n C1 C2 GOL sing 147 n n C1 H11 GOL sing 148 n n C1 H12 GOL sing 149 n n O1 HO1 GOL sing 150 n n C2 O2 GOL sing 151 n n C2 C3 GOL sing 152 n n C2 H2 GOL sing 153 n n O2 HO2 GOL sing 154 n n C3 O3 GOL sing 155 n n C3 H31 GOL sing 156 n n C3 H32 GOL sing 157 n n O3 HO3 GOL sing 158 n n # _atom_sites.entry_id 4DNP _atom_sites.fract_transf_matrix[1][1] 0.007736 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007736 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007736 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DTV A 1 301 1 DTV DTV . C 3 GOL A 1 302 1 GOL GOL . D 4 HOH A 1 401 1 HOH HOH . D 4 HOH A 2 402 2 HOH HOH . D 4 HOH A 3 403 3 HOH HOH . D 4 HOH A 4 404 4 HOH HOH . D 4 HOH A 5 405 5 HOH HOH . D 4 HOH A 6 406 6 HOH HOH . D 4 HOH A 7 407 7 HOH HOH . D 4 HOH A 8 408 8 HOH HOH . D 4 HOH A 9 409 9 HOH HOH . D 4 HOH A 10 410 10 HOH HOH . D 4 HOH A 11 411 11 HOH HOH . D 4 HOH A 12 412 12 HOH HOH . D 4 HOH A 13 413 14 HOH HOH . D 4 HOH A 14 414 15 HOH HOH . D 4 HOH A 15 415 16 HOH HOH . D 4 HOH A 16 416 17 HOH HOH . D 4 HOH A 17 417 19 HOH HOH . D 4 HOH A 18 418 20 HOH HOH . D 4 HOH A 19 419 21 HOH HOH . D 4 HOH A 20 420 22 HOH HOH . D 4 HOH A 21 421 23 HOH HOH . D 4 HOH A 22 422 24 HOH HOH . D 4 HOH A 23 423 25 HOH HOH . D 4 HOH A 24 424 26 HOH HOH . D 4 HOH A 25 425 27 HOH HOH . D 4 HOH A 26 426 28 HOH HOH . D 4 HOH A 27 427 29 HOH HOH . D 4 HOH A 28 428 30 HOH HOH . D 4 HOH A 29 429 31 HOH HOH . D 4 HOH A 30 430 32 HOH HOH . D 4 HOH A 31 431 33 HOH HOH . D 4 HOH A 32 432 34 HOH HOH . D 4 HOH A 33 433 35 HOH HOH . D 4 HOH A 34 434 36 HOH HOH . D 4 HOH A 35 435 37 HOH HOH . D 4 HOH A 36 436 38 HOH HOH . D 4 HOH A 37 437 39 HOH HOH . D 4 HOH A 38 438 40 HOH HOH . D 4 HOH A 39 439 42 HOH HOH . D 4 HOH A 40 440 43 HOH HOH . D 4 HOH A 41 441 44 HOH HOH . D 4 HOH A 42 442 45 HOH HOH . D 4 HOH A 43 443 46 HOH HOH . D 4 HOH A 44 444 47 HOH HOH . D 4 HOH A 45 445 48 HOH HOH . D 4 HOH A 46 446 49 HOH HOH . D 4 HOH A 47 447 50 HOH HOH . D 4 HOH A 48 448 51 HOH HOH . D 4 HOH A 49 449 53 HOH HOH . D 4 HOH A 50 450 54 HOH HOH . D 4 HOH A 51 451 55 HOH HOH . D 4 HOH A 52 452 56 HOH HOH . D 4 HOH A 53 453 58 HOH HOH . D 4 HOH A 54 454 59 HOH HOH . D 4 HOH A 55 455 60 HOH HOH . D 4 HOH A 56 456 61 HOH HOH . D 4 HOH A 57 457 62 HOH HOH . D 4 HOH A 58 458 63 HOH HOH . D 4 HOH A 59 459 64 HOH HOH . D 4 HOH A 60 460 65 HOH HOH . D 4 HOH A 61 461 66 HOH HOH . D 4 HOH A 62 462 67 HOH HOH . D 4 HOH A 63 463 68 HOH HOH . D 4 HOH A 64 464 69 HOH HOH . D 4 HOH A 65 465 70 HOH HOH . D 4 HOH A 66 466 72 HOH HOH . D 4 HOH A 67 467 73 HOH HOH . D 4 HOH A 68 468 74 HOH HOH . D 4 HOH A 69 469 75 HOH HOH . D 4 HOH A 70 470 76 HOH HOH . D 4 HOH A 71 471 77 HOH HOH . D 4 HOH A 72 472 78 HOH HOH . D 4 HOH A 73 473 79 HOH HOH . D 4 HOH A 74 474 80 HOH HOH . D 4 HOH A 75 475 81 HOH HOH . D 4 HOH A 76 476 83 HOH HOH . D 4 HOH A 77 477 85 HOH HOH . D 4 HOH A 78 478 86 HOH HOH . D 4 HOH A 79 479 89 HOH HOH . D 4 HOH A 80 480 92 HOH HOH . D 4 HOH A 81 481 94 HOH HOH . D 4 HOH A 82 482 95 HOH HOH . D 4 HOH A 83 483 96 HOH HOH . D 4 HOH A 84 484 97 HOH HOH . D 4 HOH A 85 485 98 HOH HOH . D 4 HOH A 86 486 101 HOH HOH . D 4 HOH A 87 487 103 HOH HOH . D 4 HOH A 88 488 104 HOH HOH . D 4 HOH A 89 489 105 HOH HOH . D 4 HOH A 90 490 106 HOH HOH . D 4 HOH A 91 491 107 HOH HOH . D 4 HOH A 92 492 110 HOH HOH . D 4 HOH A 93 493 112 HOH HOH . D 4 HOH A 94 494 113 HOH HOH . D 4 HOH A 95 495 114 HOH HOH . D 4 HOH A 96 496 116 HOH HOH . D 4 HOH A 97 497 117 HOH HOH . D 4 HOH A 98 498 118 HOH HOH . D 4 HOH A 99 499 120 HOH HOH . D 4 HOH A 100 500 121 HOH HOH . D 4 HOH A 101 501 122 HOH HOH . D 4 HOH A 102 502 125 HOH HOH . D 4 HOH A 103 503 126 HOH HOH . D 4 HOH A 104 504 127 HOH HOH . D 4 HOH A 105 505 129 HOH HOH . D 4 HOH A 106 506 130 HOH HOH . D 4 HOH A 107 507 132 HOH HOH . D 4 HOH A 108 508 133 HOH HOH . D 4 HOH A 109 509 135 HOH HOH . D 4 HOH A 110 510 138 HOH HOH . D 4 HOH A 111 511 139 HOH HOH . D 4 HOH A 112 512 140 HOH HOH . D 4 HOH A 113 513 141 HOH HOH . D 4 HOH A 114 514 142 HOH HOH . D 4 HOH A 115 515 143 HOH HOH . D 4 HOH A 116 516 144 HOH HOH . D 4 HOH A 117 517 145 HOH HOH . D 4 HOH A 118 518 146 HOH HOH . D 4 HOH A 119 519 147 HOH HOH . D 4 HOH A 120 520 148 HOH HOH . D 4 HOH A 121 521 149 HOH HOH . D 4 HOH A 122 522 150 HOH HOH . D 4 HOH A 123 523 151 HOH HOH . D 4 HOH A 124 524 152 HOH HOH . D 4 HOH A 125 525 153 HOH HOH . D 4 HOH A 126 526 155 HOH HOH . D 4 HOH A 127 527 156 HOH HOH . D 4 HOH A 128 528 157 HOH HOH . D 4 HOH A 129 529 158 HOH HOH . D 4 HOH A 130 530 159 HOH HOH . D 4 HOH A 131 531 160 HOH HOH . D 4 HOH A 132 532 161 HOH HOH . D 4 HOH A 133 533 162 HOH HOH . D 4 HOH A 134 534 163 HOH HOH . D 4 HOH A 135 535 164 HOH HOH . D 4 HOH A 136 536 165 HOH HOH . D 4 HOH A 137 537 166 HOH HOH . D 4 HOH A 138 538 167 HOH HOH . D 4 HOH A 139 539 168 HOH HOH . D 4 HOH A 140 540 169 HOH HOH . D 4 HOH A 141 541 170 HOH HOH . D 4 HOH A 142 542 171 HOH HOH . D 4 HOH A 143 543 173 HOH HOH . D 4 HOH A 144 544 174 HOH HOH . D 4 HOH A 145 545 176 HOH HOH . D 4 HOH A 146 546 177 HOH HOH . D 4 HOH A 147 547 178 HOH HOH . D 4 HOH A 148 548 179 HOH HOH . D 4 HOH A 149 549 180 HOH HOH . D 4 HOH A 150 550 181 HOH HOH . D 4 HOH A 151 551 182 HOH HOH . D 4 HOH A 152 552 183 HOH HOH . D 4 HOH A 153 553 184 HOH HOH . D 4 HOH A 154 554 186 HOH HOH . D 4 HOH A 155 555 187 HOH HOH . D 4 HOH A 156 556 188 HOH HOH . D 4 HOH A 157 557 189 HOH HOH . D 4 HOH A 158 558 190 HOH HOH . D 4 HOH A 159 559 191 HOH HOH . D 4 HOH A 160 560 192 HOH HOH . D 4 HOH A 161 561 201 HOH HOH . D 4 HOH A 162 562 202 HOH HOH . D 4 HOH A 163 563 203 HOH HOH . D 4 HOH A 164 564 205 HOH HOH . D 4 HOH A 165 565 206 HOH HOH . D 4 HOH A 166 566 207 HOH HOH . D 4 HOH A 167 567 208 HOH HOH . D 4 HOH A 168 568 209 HOH HOH . D 4 HOH A 169 569 210 HOH HOH . D 4 HOH A 170 570 211 HOH HOH . D 4 HOH A 171 571 212 HOH HOH . D 4 HOH A 172 572 213 HOH HOH . D 4 HOH A 173 573 214 HOH HOH . D 4 HOH A 174 574 215 HOH HOH . D 4 HOH A 175 575 216 HOH HOH . D 4 HOH A 176 576 217 HOH HOH . D 4 HOH A 177 577 218 HOH HOH . D 4 HOH A 178 578 219 HOH HOH . D 4 HOH A 179 579 220 HOH HOH . D 4 HOH A 180 580 221 HOH HOH . D 4 HOH A 181 581 222 HOH HOH . D 4 HOH A 182 582 223 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 -39.004 -37.384 11.58 1 39.01 ? C1 GOL 302 A 1 HETATM 2 O O1 GOL . . . C 3 -39.141 -36.286 10.678 1 37.7 ? O1 GOL 302 A 1 HETATM 3 C C2 GOL . . . C 3 -39.419 -38.671 10.852 1 39.79 ? C2 GOL 302 A 1 HETATM 4 O O2 GOL . . . C 3 -40.569 -38.425 10.031 1 36.17 ? O2 GOL 302 A 1 HETATM 5 C C3 GOL . . . C 3 -39.768 -39.78 11.86 1 41.37 ? C3 GOL 302 A 1 HETATM 6 O O3 GOL . . . C 3 -39.702 -41.075 11.249 1 44.19 ? O3 GOL 302 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 6 #