data_4DOH
#
_model_server_result.job_id            6_0ecjp7yZjTUM22ZsEJfw 
_model_server_result.datetime_utc      '2024-11-23 02:54:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4doh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":301}' 
#
_entry.id    4DOH 
#
_exptl.entry_id    4DOH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          4 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4DOH 
_cell.length_a            103.115 
_cell.length_b            111.764 
_cell.length_c            136.334 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4DOH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? trimeric 3 author_defined_assembly 1 
? trimeric 3 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,G,H,I,L,M,N 1 1 
D,E,F,J,K,O,P,Q 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 H N N 
? 4 I N N 
? 4 J N N 
? 4 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 10 A CYS 33 1_555 A SG CYS 103 A CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf2 A SG CYS 57 A CYS 80 1_555 A SG CYS 109 A CYS 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf3 A SG CYS 58 A CYS 81 1_555 A SG CYS 111 A CYS 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf4 B SG CYS 61 B CYS 89 1_555 B SG CYS 69 B CYS 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf5 B SG CYS 174 B CYS 202 1_555 B SG CYS 195 B CYS 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
disulf ? disulf6 C SG CYS 59 R CYS 87 1_555 C SG CYS 67 R CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf7 C SG CYS 187 R CYS 215 1_555 C SG CYS 208 R CYS 236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf8 D SG CYS 10 C CYS 33 1_555 D SG CYS 103 C CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
disulf ? disulf9 D SG CYS 57 C CYS 80 1_555 D SG CYS 109 C CYS 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf10 D SG CYS 58 C CYS 81 1_555 D SG CYS 111 C CYS 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf11 E SG CYS 61 D CYS 89 1_555 E SG CYS 69 D CYS 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf12 E SG CYS 174 D CYS 202 1_555 E SG CYS 195 D CYS 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf13 F SG CYS 59 E CYS 87 1_555 F SG CYS 67 E CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
disulf ? disulf14 F SG CYS 187 E CYS 215 1_555 F SG CYS 208 E CYS 236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 237 n n 
C1 O1 NAG sing 238 n n 
C1 O5 NAG sing 239 n n 
C1 H1 NAG sing 240 n n 
C2 C3 NAG sing 241 n n 
C2 N2 NAG sing 242 n n 
C2 H2 NAG sing 243 n n 
C3 C4 NAG sing 244 n n 
C3 O3 NAG sing 245 n n 
C3 H3 NAG sing 246 n n 
C4 C5 NAG sing 247 n n 
C4 O4 NAG sing 248 n n 
C4 H4 NAG sing 249 n n 
C5 C6 NAG sing 250 n n 
C5 O5 NAG sing 251 n n 
C5 H5 NAG sing 252 n n 
C6 O6 NAG sing 253 n n 
C6 H61 NAG sing 254 n n 
C6 H62 NAG sing 255 n n 
C7 C8 NAG sing 256 n n 
C7 N2 NAG sing 257 n n 
C7 O7 NAG doub 258 n n 
C8 H81 NAG sing 259 n n 
C8 H82 NAG sing 260 n n 
C8 H83 NAG sing 261 n n 
N2 HN2 NAG sing 262 n n 
O1 HO1 NAG sing 263 n n 
O3 HO3 NAG sing 264 n n 
O4 HO4 NAG sing 265 n n 
O6 HO6 NAG sing 266 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     4DOH 
_atom_sites.fract_transf_matrix[1][1]    0.009698 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008947 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007335 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 NAG B 1 301 1167 NAG NAG . 
H 4 NAG R 1 301 27 NAG NAG . 
I 4 NAG R 1 302 167 NAG NAG . 
J 4 NAG D 1 301 1672 NAG NAG . 
K 4 NAG E 1 301 1671 NAG NAG . 
L 5 HOH A 1 201 2 HOH HOH . 
L 5 HOH A 2 202 6 HOH HOH . 
L 5 HOH A 3 203 9 HOH HOH . 
L 5 HOH A 4 204 22 HOH HOH . 
L 5 HOH A 5 205 29 HOH HOH . 
L 5 HOH A 6 206 42 HOH HOH . 
L 5 HOH A 7 207 54 HOH HOH . 
M 5 HOH B 1 401 3 HOH HOH . 
M 5 HOH B 2 402 7 HOH HOH . 
M 5 HOH B 3 403 11 HOH HOH . 
M 5 HOH B 4 404 12 HOH HOH . 
M 5 HOH B 5 405 17 HOH HOH . 
M 5 HOH B 6 406 25 HOH HOH . 
M 5 HOH B 7 407 37 HOH HOH . 
M 5 HOH B 8 408 39 HOH HOH . 
M 5 HOH B 9 409 41 HOH HOH . 
M 5 HOH B 10 410 45 HOH HOH . 
M 5 HOH B 11 411 46 HOH HOH . 
M 5 HOH B 12 412 50 HOH HOH . 
M 5 HOH B 13 413 56 HOH HOH . 
M 5 HOH B 14 414 60 HOH HOH . 
N 5 HOH R 1 401 8 HOH HOH . 
N 5 HOH R 2 402 10 HOH HOH . 
N 5 HOH R 3 403 14 HOH HOH . 
N 5 HOH R 4 404 15 HOH HOH . 
N 5 HOH R 5 405 57 HOH HOH . 
N 5 HOH R 6 406 58 HOH HOH . 
O 5 HOH C 1 201 4 HOH HOH . 
O 5 HOH C 2 202 21 HOH HOH . 
O 5 HOH C 3 203 23 HOH HOH . 
O 5 HOH C 4 204 27 HOH HOH . 
O 5 HOH C 5 205 31 HOH HOH . 
O 5 HOH C 6 206 33 HOH HOH . 
O 5 HOH C 7 207 34 HOH HOH . 
O 5 HOH C 8 208 35 HOH HOH . 
O 5 HOH C 9 209 43 HOH HOH . 
O 5 HOH C 10 210 44 HOH HOH . 
O 5 HOH C 11 211 47 HOH HOH . 
O 5 HOH C 12 212 48 HOH HOH . 
O 5 HOH C 13 213 49 HOH HOH . 
O 5 HOH C 14 214 51 HOH HOH . 
O 5 HOH C 15 215 52 HOH HOH . 
O 5 HOH C 16 216 55 HOH HOH . 
P 5 HOH D 1 401 5 HOH HOH . 
P 5 HOH D 2 402 18 HOH HOH . 
P 5 HOH D 3 403 26 HOH HOH . 
P 5 HOH D 4 404 28 HOH HOH . 
P 5 HOH D 5 405 32 HOH HOH . 
P 5 HOH D 6 406 59 HOH HOH . 
Q 5 HOH E 1 401 13 HOH HOH . 
Q 5 HOH E 2 402 16 HOH HOH . 
Q 5 HOH E 3 403 19 HOH HOH . 
Q 5 HOH E 4 404 20 HOH HOH . 
Q 5 HOH E 5 405 24 HOH HOH . 
Q 5 HOH E 6 406 38 HOH HOH . 
Q 5 HOH E 7 407 40 HOH HOH . 
Q 5 HOH E 8 408 53 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . J 4 44.148 -26.87 13.927 1 57.12 ? C1 NAG 301 D 1 
HETATM 2 C C2 NAG . . . J 4 45.045 -26.345 12.809 1 57.32 ? C2 NAG 301 D 1 
HETATM 3 C C3 NAG . . . J 4 46.168 -25.448 13.341 1 60.43 ? C3 NAG 301 D 1 
HETATM 4 C C4 NAG . . . J 4 46.078 -25.4 14.866 1 60.8 ? C4 NAG 301 D 1 
HETATM 5 C C5 NAG . . . J 4 44.672 -24.999 15.344 1 61.16 ? C5 NAG 301 D 1 
HETATM 6 C C6 NAG . . . J 4 44.218 -23.564 15.088 1 61.64 ? C6 NAG 301 D 1 
HETATM 7 C C7 NAG . . . J 4 45.237 -27.305 10.678 1 56.32 ? C7 NAG 301 D 1 
HETATM 8 C C8 NAG . . . J 4 45.226 -28.536 9.801 1 57.31 ? C8 NAG 301 D 1 
HETATM 9 N N2 NAG . . . J 4 45.497 -27.447 11.986 1 58.04 ? N2 NAG 301 D 1 
HETATM 10 O O3 NAG . . . J 4 46.028 -24.163 12.772 1 60.02 ? O3 NAG 301 D 1 
HETATM 11 O O4 NAG . . . J 4 46.269 -26.735 15.295 1 64.35 ? O4 NAG 301 D 1 
HETATM 12 O O5 NAG . . . J 4 43.673 -25.82 14.766 1 58.15 ? O5 NAG 301 D 1 
HETATM 13 O O6 NAG . . . J 4 43.082 -23.223 15.93 1 58.03 ? O6 NAG 301 D 1 
HETATM 14 O O7 NAG . . . J 4 44.988 -26.197 10.168 1 54.11 ? O7 NAG 301 D 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           286 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           14 
#