data_4DOH # _model_server_result.job_id HDvnrp1QVG3c7lq76VJXnw _model_server_result.datetime_utc '2024-11-23 02:58:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4doh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":302}' # _entry.id 4DOH # _exptl.entry_id 4DOH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4DOH _cell.length_a 103.115 _cell.length_b 111.764 _cell.length_c 136.334 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4DOH _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? trimeric 3 author_defined_assembly 1 ? trimeric 3 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,G,H,I,L,M,N 1 1 D,E,F,J,K,O,P,Q 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 10 A CYS 33 1_555 A SG CYS 103 A CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf2 A SG CYS 57 A CYS 80 1_555 A SG CYS 109 A CYS 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf3 A SG CYS 58 A CYS 81 1_555 A SG CYS 111 A CYS 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf4 B SG CYS 61 B CYS 89 1_555 B SG CYS 69 B CYS 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf5 B SG CYS 174 B CYS 202 1_555 B SG CYS 195 B CYS 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf6 C SG CYS 59 R CYS 87 1_555 C SG CYS 67 R CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf7 C SG CYS 187 R CYS 215 1_555 C SG CYS 208 R CYS 236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf8 D SG CYS 10 C CYS 33 1_555 D SG CYS 103 C CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf9 D SG CYS 57 C CYS 80 1_555 D SG CYS 109 C CYS 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf10 D SG CYS 58 C CYS 81 1_555 D SG CYS 111 C CYS 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf11 E SG CYS 61 D CYS 89 1_555 E SG CYS 69 D CYS 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf12 E SG CYS 174 D CYS 202 1_555 E SG CYS 195 D CYS 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf13 F SG CYS 59 E CYS 87 1_555 F SG CYS 67 E CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf14 F SG CYS 187 E CYS 215 1_555 F SG CYS 208 E CYS 236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4DOH _atom_sites.fract_transf_matrix[1][1] 0.009698 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008947 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007335 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 NAG B 1 301 1167 NAG NAG . H 4 NAG R 1 301 27 NAG NAG . I 4 NAG R 1 302 167 NAG NAG . J 4 NAG D 1 301 1672 NAG NAG . K 4 NAG E 1 301 1671 NAG NAG . L 5 HOH A 1 201 2 HOH HOH . L 5 HOH A 2 202 6 HOH HOH . L 5 HOH A 3 203 9 HOH HOH . L 5 HOH A 4 204 22 HOH HOH . L 5 HOH A 5 205 29 HOH HOH . L 5 HOH A 6 206 42 HOH HOH . L 5 HOH A 7 207 54 HOH HOH . M 5 HOH B 1 401 3 HOH HOH . M 5 HOH B 2 402 7 HOH HOH . M 5 HOH B 3 403 11 HOH HOH . M 5 HOH B 4 404 12 HOH HOH . M 5 HOH B 5 405 17 HOH HOH . M 5 HOH B 6 406 25 HOH HOH . M 5 HOH B 7 407 37 HOH HOH . M 5 HOH B 8 408 39 HOH HOH . M 5 HOH B 9 409 41 HOH HOH . M 5 HOH B 10 410 45 HOH HOH . M 5 HOH B 11 411 46 HOH HOH . M 5 HOH B 12 412 50 HOH HOH . M 5 HOH B 13 413 56 HOH HOH . M 5 HOH B 14 414 60 HOH HOH . N 5 HOH R 1 401 8 HOH HOH . N 5 HOH R 2 402 10 HOH HOH . N 5 HOH R 3 403 14 HOH HOH . N 5 HOH R 4 404 15 HOH HOH . N 5 HOH R 5 405 57 HOH HOH . N 5 HOH R 6 406 58 HOH HOH . O 5 HOH C 1 201 4 HOH HOH . O 5 HOH C 2 202 21 HOH HOH . O 5 HOH C 3 203 23 HOH HOH . O 5 HOH C 4 204 27 HOH HOH . O 5 HOH C 5 205 31 HOH HOH . O 5 HOH C 6 206 33 HOH HOH . O 5 HOH C 7 207 34 HOH HOH . O 5 HOH C 8 208 35 HOH HOH . O 5 HOH C 9 209 43 HOH HOH . O 5 HOH C 10 210 44 HOH HOH . O 5 HOH C 11 211 47 HOH HOH . O 5 HOH C 12 212 48 HOH HOH . O 5 HOH C 13 213 49 HOH HOH . O 5 HOH C 14 214 51 HOH HOH . O 5 HOH C 15 215 52 HOH HOH . O 5 HOH C 16 216 55 HOH HOH . P 5 HOH D 1 401 5 HOH HOH . P 5 HOH D 2 402 18 HOH HOH . P 5 HOH D 3 403 26 HOH HOH . P 5 HOH D 4 404 28 HOH HOH . P 5 HOH D 5 405 32 HOH HOH . P 5 HOH D 6 406 59 HOH HOH . Q 5 HOH E 1 401 13 HOH HOH . Q 5 HOH E 2 402 16 HOH HOH . Q 5 HOH E 3 403 19 HOH HOH . Q 5 HOH E 4 404 20 HOH HOH . Q 5 HOH E 5 405 24 HOH HOH . Q 5 HOH E 6 406 38 HOH HOH . Q 5 HOH E 7 407 40 HOH HOH . Q 5 HOH E 8 408 53 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . I 4 2.491 14.895 22.507 1 49.61 ? C1 NAG 302 R 1 HETATM 2 C C2 NAG . . . I 4 2.976 15.08 21.065 1 51.47 ? C2 NAG 302 R 1 HETATM 3 C C3 NAG . . . I 4 3.885 16.315 21.051 1 51.75 ? C3 NAG 302 R 1 HETATM 4 C C4 NAG . . . I 4 3.148 17.513 21.685 1 53.46 ? C4 NAG 302 R 1 HETATM 5 C C5 NAG . . . I 4 2.154 17.187 22.811 1 52.01 ? C5 NAG 302 R 1 HETATM 6 C C6 NAG . . . I 4 1.095 18.282 22.939 1 54.14 ? C6 NAG 302 R 1 HETATM 7 C C7 NAG . . . I 4 2.951 12.824 19.98 1 51.69 ? C7 NAG 302 R 1 HETATM 8 C C8 NAG . . . I 4 3.375 11.437 20.425 1 50.09 ? C8 NAG 302 R 1 HETATM 9 N N2 NAG . . . I 4 3.616 13.855 20.559 1 50.01 ? N2 NAG 302 R 1 HETATM 10 O O3 NAG . . . I 4 4.264 16.626 19.713 1 53.67 ? O3 NAG 302 R 1 HETATM 11 O O4 NAG . . . I 4 4.097 18.417 22.232 1 53.37 ? O4 NAG 302 R 1 HETATM 12 O O5 NAG . . . I 4 1.529 15.927 22.68 1 51.74 ? O5 NAG 302 R 1 HETATM 13 O O6 NAG . . . I 4 1.192 18.739 24.29 1 54.25 ? O6 NAG 302 R 1 HETATM 14 O O7 NAG . . . I 4 2.055 12.954 19.113 1 54.68 ? O7 NAG 302 R 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #