data_4DOS # _model_server_result.job_id QDB15iI77LQEkbxEUVCITQ _model_server_result.datetime_utc '2024-10-12 15:27:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4dos # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":601}' # _entry.id 4DOS # _exptl.entry_id 4DOS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.278 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PENTAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 113.86 _cell.angle_gamma 90 _cell.entry_id 4DOS _cell.length_a 110.262 _cell.length_b 61.229 _cell.length_c 52.645 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4DOS _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? trimeric 3 author_defined_assembly 1 PISA trimeric 3 software_defined_assembly 2 PISA hexameric 6 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J 1 1 C,J 2 2 A,B,D,E,F,G,H,I 2 1 C,J 3 3,2 A,B,D,E,F,G,H,I 3 1,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_456 -x-1/2,y+1/2,-z+1 -1 0 0 0 1 0 0 0 -1 -76.426072 30.6145 48.145778 3 'crystal symmetry operation' 3_555 x+1/2,y+1/2,z 1 0 0 0 1 0 0 0 1 55.131 30.6145 0 4 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -21.295072 0 48.145778 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 G N N # _chem_comp.formula 'C10 H22 O6' _chem_comp.formula_weight 238.278 _chem_comp.id 1PE _chem_comp.mon_nstd_flag . _chem_comp.name 'PENTAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PEG400 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OH2 C12 1PE sing 1 n n OH2 HO2 1PE sing 2 n n C12 C22 1PE sing 3 n n C12 H121 1PE sing 4 n n C12 H122 1PE sing 5 n n C22 OH3 1PE sing 6 n n C22 H221 1PE sing 7 n n C22 H222 1PE sing 8 n n OH3 C23 1PE sing 9 n n C13 C23 1PE sing 10 n n C13 OH4 1PE sing 11 n n C13 H131 1PE sing 12 n n C13 H132 1PE sing 13 n n C23 H231 1PE sing 14 n n C23 H232 1PE sing 15 n n OH4 C24 1PE sing 16 n n C14 C24 1PE sing 17 n n C14 OH5 1PE sing 18 n n C14 H141 1PE sing 19 n n C14 H142 1PE sing 20 n n C24 H241 1PE sing 21 n n C24 H242 1PE sing 22 n n OH5 C25 1PE sing 23 n n C15 C25 1PE sing 24 n n C15 OH6 1PE sing 25 n n C15 H151 1PE sing 26 n n C15 H152 1PE sing 27 n n C25 H251 1PE sing 28 n n C25 H252 1PE sing 29 n n OH6 C26 1PE sing 30 n n C16 C26 1PE sing 31 n n C16 OH7 1PE sing 32 n n C16 H161 1PE sing 33 n n C16 H162 1PE sing 34 n n C26 H261 1PE sing 35 n n C26 H262 1PE sing 36 n n OH7 HO7 1PE sing 37 n n # _atom_sites.entry_id 4DOS _atom_sites.fract_transf_matrix[1][1] 0.009069 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00401 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016332 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020769 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 1PE A 1 601 339 1PE 1PE . E 3 1PE A 1 602 339 1PE 1PE . F 4 PLC A 1 603 1 PLC PLC . G 3 1PE A 1 604 1 1PE 1PE . H 5 HOH A 1 701 1 HOH HOH . H 5 HOH A 2 702 3 HOH HOH . H 5 HOH A 3 703 4 HOH HOH . H 5 HOH A 4 704 5 HOH HOH . H 5 HOH A 5 705 6 HOH HOH . H 5 HOH A 6 706 8 HOH HOH . H 5 HOH A 7 707 10 HOH HOH . H 5 HOH A 8 708 11 HOH HOH . H 5 HOH A 9 709 12 HOH HOH . H 5 HOH A 10 710 13 HOH HOH . H 5 HOH A 11 711 14 HOH HOH . H 5 HOH A 12 712 15 HOH HOH . H 5 HOH A 13 713 16 HOH HOH . H 5 HOH A 14 714 17 HOH HOH . H 5 HOH A 15 715 18 HOH HOH . H 5 HOH A 16 716 19 HOH HOH . H 5 HOH A 17 717 20 HOH HOH . H 5 HOH A 18 718 21 HOH HOH . H 5 HOH A 19 719 22 HOH HOH . H 5 HOH A 20 720 25 HOH HOH . H 5 HOH A 21 721 26 HOH HOH . H 5 HOH A 22 722 27 HOH HOH . H 5 HOH A 23 723 28 HOH HOH . H 5 HOH A 24 724 29 HOH HOH . H 5 HOH A 25 725 30 HOH HOH . H 5 HOH A 26 726 31 HOH HOH . H 5 HOH A 27 727 32 HOH HOH . H 5 HOH A 28 728 33 HOH HOH . H 5 HOH A 29 729 34 HOH HOH . H 5 HOH A 30 730 35 HOH HOH . H 5 HOH A 31 731 36 HOH HOH . H 5 HOH A 32 732 37 HOH HOH . H 5 HOH A 33 733 39 HOH HOH . H 5 HOH A 34 734 41 HOH HOH . H 5 HOH A 35 735 42 HOH HOH . H 5 HOH A 36 736 43 HOH HOH . H 5 HOH A 37 737 45 HOH HOH . H 5 HOH A 38 738 46 HOH HOH . H 5 HOH A 39 739 48 HOH HOH . H 5 HOH A 40 740 49 HOH HOH . H 5 HOH A 41 741 50 HOH HOH . H 5 HOH A 42 742 51 HOH HOH . H 5 HOH A 43 743 52 HOH HOH . H 5 HOH A 44 744 53 HOH HOH . H 5 HOH A 45 745 54 HOH HOH . H 5 HOH A 46 746 55 HOH HOH . H 5 HOH A 47 747 56 HOH HOH . H 5 HOH A 48 748 57 HOH HOH . H 5 HOH A 49 749 58 HOH HOH . H 5 HOH A 50 750 59 HOH HOH . H 5 HOH A 51 751 60 HOH HOH . H 5 HOH A 52 752 61 HOH HOH . H 5 HOH A 53 753 62 HOH HOH . H 5 HOH A 54 754 63 HOH HOH . H 5 HOH A 55 755 64 HOH HOH . H 5 HOH A 56 756 65 HOH HOH . H 5 HOH A 57 757 66 HOH HOH . H 5 HOH A 58 758 67 HOH HOH . H 5 HOH A 59 759 68 HOH HOH . H 5 HOH A 60 760 69 HOH HOH . H 5 HOH A 61 761 70 HOH HOH . H 5 HOH A 62 762 71 HOH HOH . H 5 HOH A 63 763 72 HOH HOH . H 5 HOH A 64 764 73 HOH HOH . H 5 HOH A 65 765 74 HOH HOH . H 5 HOH A 66 766 75 HOH HOH . H 5 HOH A 67 767 76 HOH HOH . H 5 HOH A 68 768 77 HOH HOH . H 5 HOH A 69 769 78 HOH HOH . H 5 HOH A 70 770 79 HOH HOH . H 5 HOH A 71 771 80 HOH HOH . H 5 HOH A 72 772 81 HOH HOH . H 5 HOH A 73 773 82 HOH HOH . H 5 HOH A 74 774 84 HOH HOH . H 5 HOH A 75 775 86 HOH HOH . H 5 HOH A 76 776 87 HOH HOH . H 5 HOH A 77 777 88 HOH HOH . H 5 HOH A 78 778 89 HOH HOH . H 5 HOH A 79 779 90 HOH HOH . H 5 HOH A 80 780 91 HOH HOH . H 5 HOH A 81 781 92 HOH HOH . H 5 HOH A 82 782 93 HOH HOH . H 5 HOH A 83 783 94 HOH HOH . H 5 HOH A 84 784 95 HOH HOH . H 5 HOH A 85 785 96 HOH HOH . H 5 HOH A 86 786 97 HOH HOH . H 5 HOH A 87 787 98 HOH HOH . H 5 HOH A 88 788 99 HOH HOH . H 5 HOH A 89 789 100 HOH HOH . H 5 HOH A 90 790 101 HOH HOH . H 5 HOH A 91 791 102 HOH HOH . H 5 HOH A 92 792 103 HOH HOH . H 5 HOH A 93 793 104 HOH HOH . H 5 HOH A 94 794 106 HOH HOH . H 5 HOH A 95 795 107 HOH HOH . H 5 HOH A 96 796 108 HOH HOH . H 5 HOH A 97 797 109 HOH HOH . H 5 HOH A 98 798 110 HOH HOH . H 5 HOH A 99 799 111 HOH HOH . H 5 HOH A 100 800 112 HOH HOH . H 5 HOH A 101 801 113 HOH HOH . H 5 HOH A 102 802 114 HOH HOH . H 5 HOH A 103 803 115 HOH HOH . H 5 HOH A 104 804 116 HOH HOH . H 5 HOH A 105 805 117 HOH HOH . H 5 HOH A 106 806 118 HOH HOH . H 5 HOH A 107 807 119 HOH HOH . H 5 HOH A 108 808 120 HOH HOH . H 5 HOH A 109 809 121 HOH HOH . H 5 HOH A 110 810 122 HOH HOH . H 5 HOH A 111 811 123 HOH HOH . H 5 HOH A 112 812 124 HOH HOH . H 5 HOH A 113 813 125 HOH HOH . H 5 HOH A 114 814 126 HOH HOH . H 5 HOH A 115 815 127 HOH HOH . H 5 HOH A 116 816 128 HOH HOH . H 5 HOH A 117 817 130 HOH HOH . H 5 HOH A 118 818 131 HOH HOH . H 5 HOH A 119 819 132 HOH HOH . H 5 HOH A 120 820 133 HOH HOH . H 5 HOH A 121 821 134 HOH HOH . H 5 HOH A 122 822 135 HOH HOH . H 5 HOH A 123 823 136 HOH HOH . H 5 HOH A 124 824 137 HOH HOH . I 5 HOH B 1 801 9 HOH HOH . I 5 HOH B 2 802 23 HOH HOH . I 5 HOH B 3 803 24 HOH HOH . I 5 HOH B 4 804 44 HOH HOH . I 5 HOH B 5 805 47 HOH HOH . I 5 HOH B 6 806 85 HOH HOH . I 5 HOH B 7 807 139 HOH HOH . J 5 HOH C 1 801 2 HOH HOH . J 5 HOH C 2 802 7 HOH HOH . J 5 HOH C 3 803 38 HOH HOH . J 5 HOH C 4 804 40 HOH HOH . J 5 HOH C 5 805 83 HOH HOH . J 5 HOH C 6 806 105 HOH HOH . J 5 HOH C 7 807 129 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OH2 1PE . . . D 3 -13.315 -35.903 17.091 1 39.94 ? OH2 1PE 601 A 1 HETATM 2 C C12 1PE . . . D 3 -13.637 -35.189 18.281 1 34.9 ? C12 1PE 601 A 1 HETATM 3 C C22 1PE . . . D 3 -13.314 -33.718 18.049 1 34.21 ? C22 1PE 601 A 1 HETATM 4 O OH3 1PE . . . D 3 -14.016 -33.276 16.891 1 33.65 ? OH3 1PE 601 A 1 HETATM 5 C C13 1PE . . . D 3 -14.326 -31.482 15.378 1 30.11 ? C13 1PE 601 A 1 HETATM 6 C C23 1PE . . . D 3 -13.792 -31.872 16.733 1 31.47 ? C23 1PE 601 A 1 HETATM 7 O OH4 1PE . . . D 3 -13.284 -31.775 14.451 1 30.07 ? OH4 1PE 601 A 1 HETATM 8 C C14 1PE . . . D 3 -12.536 -31.994 12.215 1 33.63 ? C14 1PE 601 A 1 HETATM 9 C C24 1PE . . . D 3 -13.653 -31.439 13.097 1 29.66 ? C24 1PE 601 A 1 HETATM 10 O OH5 1PE . . . D 3 -11.799 -30.89 11.691 1 37.26 ? OH5 1PE 601 A 1 HETATM 11 C C15 1PE . . . D 3 -9.476 -30.578 12.043 1 35.36 ? C15 1PE 601 A 1 HETATM 12 C C25 1PE . . . D 3 -10.516 -31.283 11.191 1 33.84 ? C25 1PE 601 A 1 HETATM 13 O OH6 1PE . . . D 3 -8.357 -31.45 12.227 1 38.87 ? OH6 1PE 601 A 1 HETATM 14 C C16 1PE . . . D 3 -6.751 -31.344 14.029 1 39.52 ? C16 1PE 601 A 1 HETATM 15 C C26 1PE . . . D 3 -7.233 -30.702 12.729 1 39.69 ? C26 1PE 601 A 1 HETATM 16 O OH7 1PE . . . D 3 -7.503 -30.812 15.114 1 37.37 ? OH7 1PE 601 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 16 #