data_4DOS # _model_server_result.job_id pebr3iGZ0jDerG6MXG7cPw _model_server_result.datetime_utc '2025-03-05 19:53:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4dos # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":603}' # _entry.id 4DOS # _exptl.entry_id 4DOS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 622.834 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIUNDECYL PHOSPHATIDYL CHOLINE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 113.86 _cell.angle_gamma 90 _cell.entry_id 4DOS _cell.length_a 110.262 _cell.length_b 61.229 _cell.length_c 52.645 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4DOS _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? trimeric 3 author_defined_assembly 1 PISA trimeric 3 software_defined_assembly 2 PISA hexameric 6 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J 1 1 C,J 2 2 A,B,D,E,F,G,H,I 2 1 C,J 3 3,2 A,B,D,E,F,G,H,I 3 1,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_456 -x-1/2,y+1/2,-z+1 -1 0 0 0 1 0 0 0 -1 -76.426072 30.6145 48.145778 3 'crystal symmetry operation' 3_555 x+1/2,y+1/2,z 1 0 0 0 1 0 0 0 1 55.131 30.6145 0 4 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -21.295072 0 48.145778 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C32 H65 N O8 P 1' _chem_comp.formula_weight 622.834 _chem_comp.id PLC _chem_comp.mon_nstd_flag . _chem_comp.name 'DIUNDECYL PHOSPHATIDYL CHOLINE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 PLC sing 297 n n C1 O3P PLC sing 298 n n C1 H11 PLC sing 299 n n C1 H12 PLC sing 300 n n C2 C3 PLC sing 301 n n C2 O2 PLC sing 302 n n C2 H2 PLC sing 303 n n C3 O3 PLC sing 304 n n C3 H31 PLC sing 305 n n C3 H32 PLC sing 306 n n C4 C5 PLC sing 307 n n C4 O4P PLC sing 308 n n C4 H41 PLC sing 309 n n C4 H42 PLC sing 310 n n C5 N PLC sing 311 n n C5 H51 PLC sing 312 n n C5 H52 PLC sing 313 n n C6 N PLC sing 314 n n C6 H61 PLC sing 315 n n C6 H62 PLC sing 316 n n C6 H63 PLC sing 317 n n C7 N PLC sing 318 n n C7 H71 PLC sing 319 n n C7 H72 PLC sing 320 n n C7 H73 PLC sing 321 n n C8 N PLC sing 322 n n C8 H81 PLC sing 323 n n C8 H82 PLC sing 324 n n C8 H83 PLC sing 325 n n C' C1' PLC sing 326 n n C' O' PLC doub 327 n n C' O2 PLC sing 328 n n C1' C2' PLC sing 329 n n C1' "H1'1" PLC sing 330 n n C1' "H1'2" PLC sing 331 n n C2' C3' PLC sing 332 n n C2' "H2'1" PLC sing 333 n n C2' "H2'2" PLC sing 334 n n C3' C4' PLC sing 335 n n C3' "H3'1" PLC sing 336 n n C3' "H3'2" PLC sing 337 n n C4' C5' PLC sing 338 n n C4' "H4'1" PLC sing 339 n n C4' "H4'2" PLC sing 340 n n C5' C6' PLC sing 341 n n C5' "H5'1" PLC sing 342 n n C5' "H5'2" PLC sing 343 n n C6' C7' PLC sing 344 n n C6' "H6'1" PLC sing 345 n n C6' "H6'2" PLC sing 346 n n C7' C8' PLC sing 347 n n C7' "H7'1" PLC sing 348 n n C7' "H7'2" PLC sing 349 n n C8' C9' PLC sing 350 n n C8' "H8'1" PLC sing 351 n n C8' "H8'2" PLC sing 352 n n C9' CA' PLC sing 353 n n C9' "H9'1" PLC sing 354 n n C9' "H9'2" PLC sing 355 n n CA' CB' PLC sing 356 n n CA' "HT'1" PLC sing 357 n n CA' "HT'2" PLC sing 358 n n CB' "HE'1" PLC sing 359 n n CB' "HE'2" PLC sing 360 n n CB' "HE'3" PLC sing 361 n n CB C1B PLC sing 362 n n CB OB PLC doub 363 n n CB O3 PLC sing 364 n n C1B C2B PLC sing 365 n n C1B H1A1 PLC sing 366 n n C1B H1A2 PLC sing 367 n n C2B C3B PLC sing 368 n n C2B H2A1 PLC sing 369 n n C2B H2A2 PLC sing 370 n n C3B C4B PLC sing 371 n n C3B H3A1 PLC sing 372 n n C3B H3A2 PLC sing 373 n n C4B C5B PLC sing 374 n n C4B H4A1 PLC sing 375 n n C4B H4A2 PLC sing 376 n n C5B C6B PLC sing 377 n n C5B H5A1 PLC sing 378 n n C5B H5A2 PLC sing 379 n n C6B C7B PLC sing 380 n n C6B H6A1 PLC sing 381 n n C6B H6A2 PLC sing 382 n n C7B C8B PLC sing 383 n n C7B H7A1 PLC sing 384 n n C7B H7A2 PLC sing 385 n n C8B C9B PLC sing 386 n n C8B H8A1 PLC sing 387 n n C8B H8A2 PLC sing 388 n n C9B CAA PLC sing 389 n n C9B H9A1 PLC sing 390 n n C9B H9A2 PLC sing 391 n n CAA CBA PLC sing 392 n n CAA HTA1 PLC sing 393 n n CAA HTA2 PLC sing 394 n n CBA HEA1 PLC sing 395 n n CBA HEA2 PLC sing 396 n n CBA HEA3 PLC sing 397 n n O1P P PLC doub 398 n n O2P P PLC sing 399 n n O2P HOP2 PLC sing 400 n n O3P P PLC sing 401 n n O4P P PLC sing 402 n n # _atom_sites.entry_id 4DOS _atom_sites.fract_transf_matrix[1][1] 0.009069 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00401 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016332 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020769 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 1PE A 1 601 339 1PE 1PE . E 3 1PE A 1 602 339 1PE 1PE . F 4 PLC A 1 603 1 PLC PLC . G 3 1PE A 1 604 1 1PE 1PE . H 5 HOH A 1 701 1 HOH HOH . H 5 HOH A 2 702 3 HOH HOH . H 5 HOH A 3 703 4 HOH HOH . H 5 HOH A 4 704 5 HOH HOH . H 5 HOH A 5 705 6 HOH HOH . H 5 HOH A 6 706 8 HOH HOH . H 5 HOH A 7 707 10 HOH HOH . H 5 HOH A 8 708 11 HOH HOH . H 5 HOH A 9 709 12 HOH HOH . H 5 HOH A 10 710 13 HOH HOH . H 5 HOH A 11 711 14 HOH HOH . H 5 HOH A 12 712 15 HOH HOH . H 5 HOH A 13 713 16 HOH HOH . H 5 HOH A 14 714 17 HOH HOH . H 5 HOH A 15 715 18 HOH HOH . H 5 HOH A 16 716 19 HOH HOH . H 5 HOH A 17 717 20 HOH HOH . H 5 HOH A 18 718 21 HOH HOH . H 5 HOH A 19 719 22 HOH HOH . H 5 HOH A 20 720 25 HOH HOH . H 5 HOH A 21 721 26 HOH HOH . H 5 HOH A 22 722 27 HOH HOH . H 5 HOH A 23 723 28 HOH HOH . H 5 HOH A 24 724 29 HOH HOH . H 5 HOH A 25 725 30 HOH HOH . H 5 HOH A 26 726 31 HOH HOH . H 5 HOH A 27 727 32 HOH HOH . H 5 HOH A 28 728 33 HOH HOH . H 5 HOH A 29 729 34 HOH HOH . H 5 HOH A 30 730 35 HOH HOH . H 5 HOH A 31 731 36 HOH HOH . H 5 HOH A 32 732 37 HOH HOH . H 5 HOH A 33 733 39 HOH HOH . H 5 HOH A 34 734 41 HOH HOH . H 5 HOH A 35 735 42 HOH HOH . H 5 HOH A 36 736 43 HOH HOH . H 5 HOH A 37 737 45 HOH HOH . H 5 HOH A 38 738 46 HOH HOH . H 5 HOH A 39 739 48 HOH HOH . H 5 HOH A 40 740 49 HOH HOH . H 5 HOH A 41 741 50 HOH HOH . H 5 HOH A 42 742 51 HOH HOH . H 5 HOH A 43 743 52 HOH HOH . H 5 HOH A 44 744 53 HOH HOH . H 5 HOH A 45 745 54 HOH HOH . H 5 HOH A 46 746 55 HOH HOH . H 5 HOH A 47 747 56 HOH HOH . H 5 HOH A 48 748 57 HOH HOH . H 5 HOH A 49 749 58 HOH HOH . H 5 HOH A 50 750 59 HOH HOH . H 5 HOH A 51 751 60 HOH HOH . H 5 HOH A 52 752 61 HOH HOH . H 5 HOH A 53 753 62 HOH HOH . H 5 HOH A 54 754 63 HOH HOH . H 5 HOH A 55 755 64 HOH HOH . H 5 HOH A 56 756 65 HOH HOH . H 5 HOH A 57 757 66 HOH HOH . H 5 HOH A 58 758 67 HOH HOH . H 5 HOH A 59 759 68 HOH HOH . H 5 HOH A 60 760 69 HOH HOH . H 5 HOH A 61 761 70 HOH HOH . H 5 HOH A 62 762 71 HOH HOH . H 5 HOH A 63 763 72 HOH HOH . H 5 HOH A 64 764 73 HOH HOH . H 5 HOH A 65 765 74 HOH HOH . H 5 HOH A 66 766 75 HOH HOH . H 5 HOH A 67 767 76 HOH HOH . H 5 HOH A 68 768 77 HOH HOH . H 5 HOH A 69 769 78 HOH HOH . H 5 HOH A 70 770 79 HOH HOH . H 5 HOH A 71 771 80 HOH HOH . H 5 HOH A 72 772 81 HOH HOH . H 5 HOH A 73 773 82 HOH HOH . H 5 HOH A 74 774 84 HOH HOH . H 5 HOH A 75 775 86 HOH HOH . H 5 HOH A 76 776 87 HOH HOH . H 5 HOH A 77 777 88 HOH HOH . H 5 HOH A 78 778 89 HOH HOH . H 5 HOH A 79 779 90 HOH HOH . H 5 HOH A 80 780 91 HOH HOH . H 5 HOH A 81 781 92 HOH HOH . H 5 HOH A 82 782 93 HOH HOH . H 5 HOH A 83 783 94 HOH HOH . H 5 HOH A 84 784 95 HOH HOH . H 5 HOH A 85 785 96 HOH HOH . H 5 HOH A 86 786 97 HOH HOH . H 5 HOH A 87 787 98 HOH HOH . H 5 HOH A 88 788 99 HOH HOH . H 5 HOH A 89 789 100 HOH HOH . H 5 HOH A 90 790 101 HOH HOH . H 5 HOH A 91 791 102 HOH HOH . H 5 HOH A 92 792 103 HOH HOH . H 5 HOH A 93 793 104 HOH HOH . H 5 HOH A 94 794 106 HOH HOH . H 5 HOH A 95 795 107 HOH HOH . H 5 HOH A 96 796 108 HOH HOH . H 5 HOH A 97 797 109 HOH HOH . H 5 HOH A 98 798 110 HOH HOH . H 5 HOH A 99 799 111 HOH HOH . H 5 HOH A 100 800 112 HOH HOH . H 5 HOH A 101 801 113 HOH HOH . H 5 HOH A 102 802 114 HOH HOH . H 5 HOH A 103 803 115 HOH HOH . H 5 HOH A 104 804 116 HOH HOH . H 5 HOH A 105 805 117 HOH HOH . H 5 HOH A 106 806 118 HOH HOH . H 5 HOH A 107 807 119 HOH HOH . H 5 HOH A 108 808 120 HOH HOH . H 5 HOH A 109 809 121 HOH HOH . H 5 HOH A 110 810 122 HOH HOH . H 5 HOH A 111 811 123 HOH HOH . H 5 HOH A 112 812 124 HOH HOH . H 5 HOH A 113 813 125 HOH HOH . H 5 HOH A 114 814 126 HOH HOH . H 5 HOH A 115 815 127 HOH HOH . H 5 HOH A 116 816 128 HOH HOH . H 5 HOH A 117 817 130 HOH HOH . H 5 HOH A 118 818 131 HOH HOH . H 5 HOH A 119 819 132 HOH HOH . H 5 HOH A 120 820 133 HOH HOH . H 5 HOH A 121 821 134 HOH HOH . H 5 HOH A 122 822 135 HOH HOH . H 5 HOH A 123 823 136 HOH HOH . H 5 HOH A 124 824 137 HOH HOH . I 5 HOH B 1 801 9 HOH HOH . I 5 HOH B 2 802 23 HOH HOH . I 5 HOH B 3 803 24 HOH HOH . I 5 HOH B 4 804 44 HOH HOH . I 5 HOH B 5 805 47 HOH HOH . I 5 HOH B 6 806 85 HOH HOH . I 5 HOH B 7 807 139 HOH HOH . J 5 HOH C 1 801 2 HOH HOH . J 5 HOH C 2 802 7 HOH HOH . J 5 HOH C 3 803 38 HOH HOH . J 5 HOH C 4 804 40 HOH HOH . J 5 HOH C 5 805 83 HOH HOH . J 5 HOH C 6 806 105 HOH HOH . J 5 HOH C 7 807 129 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PLC . . . F 4 -15.905 -32.257 2.964 1 19.9 ? C1 PLC 603 A 1 HETATM 2 C C2 PLC . . . F 4 -15.138 -31.621 4.114 1 19.6 ? C2 PLC 603 A 1 HETATM 3 C C3 PLC . . . F 4 -13.653 -31.642 3.811 1 20.95 ? C3 PLC 603 A 1 HETATM 4 C C4 PLC . . . F 4 -15.588 -33.887 -0.163 1 20.54 ? C4 PLC 603 A 1 HETATM 5 C C5 PLC . . . F 4 -15.474 -33.96 -1.686 1 21.04 ? C5 PLC 603 A 1 HETATM 6 C C6 PLC . . . F 4 -16.419 -34.611 -3.735 1 23.45 ? C6 PLC 603 A 1 HETATM 7 C C7 PLC . . . F 4 -15.749 -36.347 -2.205 1 23.75 ? C7 PLC 603 A 1 HETATM 8 C C8 PLC . . . F 4 -17.675 -35.067 -1.722 1 23.45 ? C8 PLC 603 A 1 HETATM 9 C C' PLC . . . F 4 -16.161 -29.8 5.374 1 20.31 ? C' PLC 603 A 1 HETATM 10 C C1' PLC . . . F 4 -16.625 -28.363 5.349 1 20.29 ? C1' PLC 603 A 1 HETATM 11 C C2' PLC . . . F 4 -17.693 -28.014 6.367 1 20.15 ? C2' PLC 603 A 1 HETATM 12 C C3' PLC . . . F 4 -18.24 -26.649 5.974 1 20.84 ? C3' PLC 603 A 1 HETATM 13 C C4' PLC . . . F 4 -18.895 -25.922 7.136 1 21.8 ? C4' PLC 603 A 1 HETATM 14 C C5' PLC . . . F 4 -20.137 -26.65 7.648 0.5 21.03 ? C5' PLC 603 A 1 HETATM 15 C C6' PLC . . . F 4 -21.416 -26.097 7.029 0.5 20.94 ? C6' PLC 603 A 1 HETATM 16 C C7' PLC . . . F 4 -21.512 -24.582 7.19 0.5 20.68 ? C7' PLC 603 A 1 HETATM 17 C C8' PLC . . . F 4 -22.714 -24.044 6.429 0.5 20.67 ? C8' PLC 603 A 1 HETATM 18 C C9' PLC . . . F 4 -22.797 -22.529 6.535 0.5 20.12 ? C9' PLC 603 A 1 HETATM 19 C CA' PLC . . . F 4 -24.006 -22.029 5.757 0.5 19.87 ? CA' PLC 603 A 1 HETATM 20 C CB' PLC . . . F 4 -24.7 -20.931 6.52 0.5 19.26 ? CB' PLC 603 A 1 HETATM 21 C CB PLC . . . F 4 -11.74 -30.405 4.885 1 21.03 ? CB PLC 603 A 1 HETATM 22 C C1B PLC . . . F 4 -11.077 -29.997 6.182 1 20 ? C1B PLC 603 A 1 HETATM 23 C C2B PLC . . . F 4 -12.077 -29.16 6.971 1 20.15 ? C2B PLC 603 A 1 HETATM 24 C C3B PLC . . . F 4 -12.389 -27.865 6.227 1 20.86 ? C3B PLC 603 A 1 HETATM 25 C C4B PLC . . . F 4 -13.41 -27.095 7.04 1 21.43 ? C4B PLC 603 A 1 HETATM 26 C C5B PLC . . . F 4 -13.511 -25.644 6.599 1 21.18 ? C5B PLC 603 A 1 HETATM 27 C C6B PLC . . . F 4 -14.532 -24.991 7.514 1 20.65 ? C6B PLC 603 A 1 HETATM 28 C C7B PLC . . . F 4 -15.131 -23.732 6.917 1 21.27 ? C7B PLC 603 A 1 HETATM 29 C C8B PLC . . . F 4 -16.114 -23.135 7.921 1 21.44 ? C8B PLC 603 A 1 HETATM 30 C C9B PLC . . . F 4 -17.127 -22.203 7.261 0.5 20.54 ? C9B PLC 603 A 1 HETATM 31 C CAA PLC . . . F 4 -16.451 -21.141 6.403 0.5 20.55 ? CAA PLC 603 A 1 HETATM 32 C CBA PLC . . . F 4 -16.526 -21.573 4.917 0 19.74 ? CBA PLC 603 A 1 HETATM 33 O O' PLC . . . F 4 -16.287 -30.557 6.326 1 21.59 ? O' PLC 603 A 1 HETATM 34 O OB PLC . . . F 4 -11.251 -30.124 3.804 1 24.13 ? OB PLC 603 A 1 HETATM 35 O O2 PLC . . . F 4 -15.512 -30.25 4.175 1 21.08 ? O2 PLC 603 A 1 HETATM 36 O O3 PLC . . . F 4 -12.996 -31.121 4.963 1 22.17 ? O3 PLC 603 A 1 HETATM 37 O O1P PLC . . . F 4 -16.062 -30.827 -0.597 1 21.09 ? O1P PLC 603 A 1 HETATM 38 O O2P PLC . . . F 4 -18.093 -31.177 0.98 1 19.01 ? O2P PLC 603 A 1 HETATM 39 O O3P PLC . . . F 4 -15.702 -31.474 1.783 1 19.08 ? O3P PLC 603 A 1 HETATM 40 O O4P PLC . . . F 4 -16.751 -33.135 0.198 1 19.51 ? O4P PLC 603 A 1 HETATM 41 N N PLC . . . F 4 -16.324 -34.998 -2.318 1 21.4 ? N PLC 603 A 1 HETATM 42 P P PLC . . . F 4 -16.711 -31.566 0.526 1 19.47 ? P PLC 603 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 42 #