data_4DOU
#
_model_server_result.job_id            o05gz78_FYvabc_A-JcXIw 
_model_server_result.datetime_utc      '2024-11-13 06:25:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4dou 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":1005}' 
#
_entry.id    4DOU 
#
_exptl.entry_id    4DOU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         117.23 
_cell.angle_beta          101.68 
_cell.angle_gamma         105.31 
_cell.entry_id            4DOU 
_cell.length_a            48.31 
_cell.length_b            49.63 
_cell.length_c            50.46 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4DOU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 101 A ASP 187 1_555 D CA CA . A CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? 
metalc ? metalc2 A O GLN 102 A GLN 188 1_555 D CA CA . A CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.467 ? 
metalc ? metalc3 A OD1 ASN 107 A ASN 193 1_555 C CA CA . A CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.621 ? 
metalc ? metalc4 A O VAL 108 A VAL 194 1_555 C CA CA . A CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? 
metalc ? metalc5 A OD1 ASP 109 A ASP 195 1_555 C CA CA . A CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? 
metalc ? metalc6 A OD2 ASP 109 A ASP 195 1_555 D CA CA . A CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? 
metalc ? metalc7 A O GLN 110 A GLN 196 1_555 E NA NA . A NA 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? 
metalc ? metalc8 A OD1 ASP 242 A ASP 328 1_555 B CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? 
metalc ? metalc9 A O GLN 243 A GLN 329 1_555 B CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? 
metalc ? metalc10 A OD1 ASN 248 A ASN 334 1_555 D CA CA . A CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? 
metalc ? metalc11 A O VAL 249 A VAL 335 1_555 D CA CA . A CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? 
metalc ? metalc12 A OD1 ASP 250 A ASP 336 1_555 B CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? 
metalc ? metalc13 A OD2 ASP 250 A ASP 336 1_555 D CA CA . A CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? 
metalc ? metalc14 A O GLN 251 A GLN 337 1_555 E NA NA . A NA 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? 
metalc ? metalc15 A OD1 ASP 383 A ASP 469 1_555 C CA CA . A CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? 
metalc ? metalc16 A O GLN 384 A GLN 470 1_555 C CA CA . A CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? 
metalc ? metalc17 A OD1 ASN 389 A ASN 475 1_555 B CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? 
metalc ? metalc18 A O VAL 390 A VAL 476 1_555 B CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? 
metalc ? metalc19 A OD1 ASP 391 A ASP 477 1_555 B CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? 
metalc ? metalc20 A OD2 ASP 391 A ASP 477 1_555 C CA CA . A CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? 
metalc ? metalc21 A O GLN 392 A GLN 478 1_555 E NA NA . A NA 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? 
metalc ? metalc22 E NA NA . A NA 1004 1_555 L O HOH . A HOH 1113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? 
metalc ? metalc23 E NA NA . A NA 1004 1_555 L O HOH . A HOH 1136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? 
metalc ? metalc24 E NA NA . A NA 1004 1_555 L O HOH . A HOH 1225 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.629 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 138 n n 
C1 C2 GOL sing 139 n n 
C1 H11 GOL sing 140 n n 
C1 H12 GOL sing 141 n n 
O1 HO1 GOL sing 142 n n 
C2 O2 GOL sing 143 n n 
C2 C3 GOL sing 144 n n 
C2 H2 GOL sing 145 n n 
O2 HO2 GOL sing 146 n n 
C3 O3 GOL sing 147 n n 
C3 H31 GOL sing 148 n n 
C3 H32 GOL sing 149 n n 
O3 HO3 GOL sing 150 n n 
#
_atom_sites.entry_id                     4DOU 
_atom_sites.fract_transf_matrix[1][1]    0.0207 
_atom_sites.fract_transf_matrix[1][2]    0.005667 
_atom_sites.fract_transf_matrix[1][3]    0.008734 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.020891 
_atom_sites.fract_transf_matrix[2][3]    0.013439 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.024062 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CA A 1 1001 1001 CA CA . 
C 2 CA A 1 1002 1002 CA CA . 
D 2 CA A 1 1003 1003 CA CA . 
E 3 NA A 1 1004 1004 NA NA . 
F 4 GOL A 1 1005 2001 GOL GOL . 
G 5 EDO A 1 1006 2002 EDO EDO . 
H 5 EDO A 1 1007 2003 EDO EDO . 
I 5 EDO A 1 1008 2004 EDO EDO . 
J 5 EDO A 1 1009 2005 EDO EDO . 
K 5 EDO A 1 1010 2006 EDO EDO . 
L 6 HOH A 1 1101 1 HOH HOH . 
L 6 HOH A 2 1102 2 HOH HOH . 
L 6 HOH A 3 1103 3 HOH HOH . 
L 6 HOH A 4 1104 4 HOH HOH . 
L 6 HOH A 5 1105 5 HOH HOH . 
L 6 HOH A 6 1106 6 HOH HOH . 
L 6 HOH A 7 1107 7 HOH HOH . 
L 6 HOH A 8 1108 8 HOH HOH . 
L 6 HOH A 9 1109 9 HOH HOH . 
L 6 HOH A 10 1110 10 HOH HOH . 
L 6 HOH A 11 1111 11 HOH HOH . 
L 6 HOH A 12 1112 12 HOH HOH . 
L 6 HOH A 13 1113 13 HOH HOH . 
L 6 HOH A 14 1114 14 HOH HOH . 
L 6 HOH A 15 1115 15 HOH HOH . 
L 6 HOH A 16 1116 16 HOH HOH . 
L 6 HOH A 17 1117 17 HOH HOH . 
L 6 HOH A 18 1118 18 HOH HOH . 
L 6 HOH A 19 1119 19 HOH HOH . 
L 6 HOH A 20 1120 20 HOH HOH . 
L 6 HOH A 21 1121 21 HOH HOH . 
L 6 HOH A 22 1122 22 HOH HOH . 
L 6 HOH A 23 1123 23 HOH HOH . 
L 6 HOH A 24 1124 24 HOH HOH . 
L 6 HOH A 25 1125 25 HOH HOH . 
L 6 HOH A 26 1126 26 HOH HOH . 
L 6 HOH A 27 1127 27 HOH HOH . 
L 6 HOH A 28 1128 28 HOH HOH . 
L 6 HOH A 29 1129 29 HOH HOH . 
L 6 HOH A 30 1130 30 HOH HOH . 
L 6 HOH A 31 1131 31 HOH HOH . 
L 6 HOH A 32 1132 32 HOH HOH . 
L 6 HOH A 33 1133 33 HOH HOH . 
L 6 HOH A 34 1134 34 HOH HOH . 
L 6 HOH A 35 1135 35 HOH HOH . 
L 6 HOH A 36 1136 36 HOH HOH . 
L 6 HOH A 37 1137 37 HOH HOH . 
L 6 HOH A 38 1138 38 HOH HOH . 
L 6 HOH A 39 1139 39 HOH HOH . 
L 6 HOH A 40 1140 40 HOH HOH . 
L 6 HOH A 41 1141 41 HOH HOH . 
L 6 HOH A 42 1142 42 HOH HOH . 
L 6 HOH A 43 1143 43 HOH HOH . 
L 6 HOH A 44 1144 44 HOH HOH . 
L 6 HOH A 45 1145 45 HOH HOH . 
L 6 HOH A 46 1146 46 HOH HOH . 
L 6 HOH A 47 1147 47 HOH HOH . 
L 6 HOH A 48 1148 48 HOH HOH . 
L 6 HOH A 49 1149 49 HOH HOH . 
L 6 HOH A 50 1150 50 HOH HOH . 
L 6 HOH A 51 1151 51 HOH HOH . 
L 6 HOH A 52 1152 52 HOH HOH . 
L 6 HOH A 53 1153 53 HOH HOH . 
L 6 HOH A 54 1154 54 HOH HOH . 
L 6 HOH A 55 1155 55 HOH HOH . 
L 6 HOH A 56 1156 56 HOH HOH . 
L 6 HOH A 57 1157 57 HOH HOH . 
L 6 HOH A 58 1158 58 HOH HOH . 
L 6 HOH A 59 1159 59 HOH HOH . 
L 6 HOH A 60 1160 60 HOH HOH . 
L 6 HOH A 61 1161 61 HOH HOH . 
L 6 HOH A 62 1162 62 HOH HOH . 
L 6 HOH A 63 1163 63 HOH HOH . 
L 6 HOH A 64 1164 64 HOH HOH . 
L 6 HOH A 65 1165 65 HOH HOH . 
L 6 HOH A 66 1166 66 HOH HOH . 
L 6 HOH A 67 1167 67 HOH HOH . 
L 6 HOH A 68 1168 68 HOH HOH . 
L 6 HOH A 69 1169 69 HOH HOH . 
L 6 HOH A 70 1170 70 HOH HOH . 
L 6 HOH A 71 1171 71 HOH HOH . 
L 6 HOH A 72 1172 72 HOH HOH . 
L 6 HOH A 73 1173 73 HOH HOH . 
L 6 HOH A 74 1174 74 HOH HOH . 
L 6 HOH A 75 1175 75 HOH HOH . 
L 6 HOH A 76 1176 76 HOH HOH . 
L 6 HOH A 77 1177 77 HOH HOH . 
L 6 HOH A 78 1178 78 HOH HOH . 
L 6 HOH A 79 1179 79 HOH HOH . 
L 6 HOH A 80 1180 80 HOH HOH . 
L 6 HOH A 81 1181 81 HOH HOH . 
L 6 HOH A 82 1182 82 HOH HOH . 
L 6 HOH A 83 1183 83 HOH HOH . 
L 6 HOH A 84 1184 84 HOH HOH . 
L 6 HOH A 85 1185 85 HOH HOH . 
L 6 HOH A 86 1186 86 HOH HOH . 
L 6 HOH A 87 1187 87 HOH HOH . 
L 6 HOH A 88 1188 88 HOH HOH . 
L 6 HOH A 89 1189 89 HOH HOH . 
L 6 HOH A 90 1190 90 HOH HOH . 
L 6 HOH A 91 1191 91 HOH HOH . 
L 6 HOH A 92 1192 92 HOH HOH . 
L 6 HOH A 93 1193 93 HOH HOH . 
L 6 HOH A 94 1194 94 HOH HOH . 
L 6 HOH A 95 1195 95 HOH HOH . 
L 6 HOH A 96 1196 96 HOH HOH . 
L 6 HOH A 97 1197 97 HOH HOH . 
L 6 HOH A 98 1198 98 HOH HOH . 
L 6 HOH A 99 1199 99 HOH HOH . 
L 6 HOH A 100 1200 100 HOH HOH . 
L 6 HOH A 101 1201 101 HOH HOH . 
L 6 HOH A 102 1202 102 HOH HOH . 
L 6 HOH A 103 1203 103 HOH HOH . 
L 6 HOH A 104 1204 104 HOH HOH . 
L 6 HOH A 105 1205 105 HOH HOH . 
L 6 HOH A 106 1206 106 HOH HOH . 
L 6 HOH A 107 1207 107 HOH HOH . 
L 6 HOH A 108 1208 108 HOH HOH . 
L 6 HOH A 109 1209 109 HOH HOH . 
L 6 HOH A 110 1210 110 HOH HOH . 
L 6 HOH A 111 1211 111 HOH HOH . 
L 6 HOH A 112 1212 112 HOH HOH . 
L 6 HOH A 113 1213 113 HOH HOH . 
L 6 HOH A 114 1214 114 HOH HOH . 
L 6 HOH A 115 1215 115 HOH HOH . 
L 6 HOH A 116 1216 116 HOH HOH . 
L 6 HOH A 117 1217 117 HOH HOH . 
L 6 HOH A 118 1218 118 HOH HOH . 
L 6 HOH A 119 1219 119 HOH HOH . 
L 6 HOH A 120 1220 120 HOH HOH . 
L 6 HOH A 121 1221 121 HOH HOH . 
L 6 HOH A 122 1222 122 HOH HOH . 
L 6 HOH A 123 1223 123 HOH HOH . 
L 6 HOH A 124 1224 124 HOH HOH . 
L 6 HOH A 125 1225 125 HOH HOH . 
L 6 HOH A 126 1226 126 HOH HOH . 
L 6 HOH A 127 1227 127 HOH HOH . 
L 6 HOH A 128 1228 128 HOH HOH . 
L 6 HOH A 129 1229 129 HOH HOH . 
L 6 HOH A 130 1230 130 HOH HOH . 
L 6 HOH A 131 1231 131 HOH HOH . 
L 6 HOH A 132 1232 132 HOH HOH . 
L 6 HOH A 133 1233 133 HOH HOH . 
L 6 HOH A 134 1234 134 HOH HOH . 
L 6 HOH A 135 1235 135 HOH HOH . 
L 6 HOH A 136 1236 136 HOH HOH . 
L 6 HOH A 137 1237 137 HOH HOH . 
L 6 HOH A 138 1238 138 HOH HOH . 
L 6 HOH A 139 1239 139 HOH HOH . 
L 6 HOH A 140 1240 140 HOH HOH . 
L 6 HOH A 141 1241 141 HOH HOH . 
L 6 HOH A 142 1242 142 HOH HOH . 
L 6 HOH A 143 1243 143 HOH HOH . 
L 6 HOH A 144 1244 144 HOH HOH . 
L 6 HOH A 145 1245 145 HOH HOH . 
L 6 HOH A 146 1246 146 HOH HOH . 
L 6 HOH A 147 1247 147 HOH HOH . 
L 6 HOH A 148 1248 148 HOH HOH . 
L 6 HOH A 149 1249 149 HOH HOH . 
L 6 HOH A 150 1250 150 HOH HOH . 
L 6 HOH A 151 1251 151 HOH HOH . 
L 6 HOH A 152 1252 152 HOH HOH . 
L 6 HOH A 153 1253 153 HOH HOH . 
L 6 HOH A 154 1254 154 HOH HOH . 
L 6 HOH A 155 1255 155 HOH HOH . 
L 6 HOH A 156 1256 156 HOH HOH . 
L 6 HOH A 157 1257 157 HOH HOH . 
L 6 HOH A 158 1258 158 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . F 4 12.452 -40.56 19.164 1 41.15 ? C1 GOL 1005 A 1 
HETATM 2 O O1 GOL . . . F 4 11.594 -41.5 19.774 1 41.7 ? O1 GOL 1005 A 1 
HETATM 3 C C2 GOL . . . F 4 13.608 -41.283 18.48 1 41.57 ? C2 GOL 1005 A 1 
HETATM 4 O O2 GOL . . . F 4 14.313 -42.054 19.433 1 42.04 ? O2 GOL 1005 A 1 
HETATM 5 C C3 GOL . . . F 4 14.559 -40.266 17.86 1 41.51 ? C3 GOL 1005 A 1 
HETATM 6 O O3 GOL . . . F 4 15.32 -40.892 16.848 1 41.14 ? O3 GOL 1005 A 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           274 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#