data_4DP5
#
_model_server_result.job_id            33oiadMjZ7alQbI5msl_Fw 
_model_server_result.datetime_utc      '2024-10-19 00:49:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4dp5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":102}' 
#
_entry.id    4DP5 
#
_exptl.entry_id    4DP5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4DP5 
_cell.length_a            31.913 
_cell.length_b            46.246 
_cell.length_c            52.648 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4DP5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A ND1 HIS 37 X HIS 37 1_555 B CU CU . X CU 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
metalc ? metalc2 A SG CYS 84 X CYS 84 1_555 B CU CU . X CU 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? 
metalc ? metalc3 A ND1 HIS 87 X HIS 87 1_555 B CU CU . X CU 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 103 n n 
C1 C2 GOL sing 104 n n 
C1 H11 GOL sing 105 n n 
C1 H12 GOL sing 106 n n 
O1 HO1 GOL sing 107 n n 
C2 O2 GOL sing 108 n n 
C2 C3 GOL sing 109 n n 
C2 H2 GOL sing 110 n n 
O2 HO2 GOL sing 111 n n 
C3 O3 GOL sing 112 n n 
C3 H31 GOL sing 113 n n 
C3 H32 GOL sing 114 n n 
O3 HO3 GOL sing 115 n n 
#
_atom_sites.entry_id                     4DP5 
_atom_sites.fract_transf_matrix[1][1]    0.031335 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.021623 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.018994 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CU X 1 100 100 CU CU . 
C 3 SO4 X 1 101 101 SO4 SO4 . 
D 4 GOL X 1 102 102 GOL GOL . 
E 5 HOH X 1 201 201 HOH HOH . 
E 5 HOH X 2 202 202 HOH HOH . 
E 5 HOH X 3 203 204 HOH HOH . 
E 5 HOH X 4 204 205 HOH HOH . 
E 5 HOH X 5 205 206 HOH HOH . 
E 5 HOH X 6 206 207 HOH HOH . 
E 5 HOH X 7 207 208 HOH HOH . 
E 5 HOH X 8 208 210 HOH HOH . 
E 5 HOH X 9 209 214 HOH HOH . 
E 5 HOH X 10 210 219 HOH HOH . 
E 5 HOH X 11 211 222 HOH HOH . 
E 5 HOH X 12 212 223 HOH HOH . 
E 5 HOH X 13 213 224 HOH HOH . 
E 5 HOH X 14 214 225 HOH HOH . 
E 5 HOH X 15 215 226 HOH HOH . 
E 5 HOH X 16 216 227 HOH HOH . 
E 5 HOH X 17 217 229 HOH HOH . 
E 5 HOH X 18 218 230 HOH HOH . 
E 5 HOH X 19 219 231 HOH HOH . 
E 5 HOH X 20 220 232 HOH HOH . 
E 5 HOH X 21 221 233 HOH HOH . 
E 5 HOH X 22 222 234 HOH HOH . 
E 5 HOH X 23 223 235 HOH HOH . 
E 5 HOH X 24 224 236 HOH HOH . 
E 5 HOH X 25 225 238 HOH HOH . 
E 5 HOH X 26 226 239 HOH HOH . 
E 5 HOH X 27 227 240 HOH HOH . 
E 5 HOH X 28 228 241 HOH HOH . 
E 5 HOH X 29 229 242 HOH HOH . 
E 5 HOH X 30 230 243 HOH HOH . 
E 5 HOH X 31 231 244 HOH HOH . 
E 5 HOH X 32 232 245 HOH HOH . 
E 5 HOH X 33 233 246 HOH HOH . 
E 5 HOH X 34 234 247 HOH HOH . 
E 5 HOH X 35 235 248 HOH HOH . 
E 5 HOH X 36 236 249 HOH HOH . 
E 5 HOH X 37 237 250 HOH HOH . 
E 5 HOH X 38 238 251 HOH HOH . 
E 5 HOH X 39 239 252 HOH HOH . 
E 5 HOH X 40 240 254 HOH HOH . 
E 5 HOH X 41 241 256 HOH HOH . 
E 5 HOH X 42 242 257 HOH HOH . 
E 5 HOH X 43 243 258 HOH HOH . 
E 5 HOH X 44 244 259 HOH HOH . 
E 5 HOH X 45 245 260 HOH HOH . 
E 5 HOH X 46 246 261 HOH HOH . 
E 5 HOH X 47 247 263 HOH HOH . 
E 5 HOH X 48 248 264 HOH HOH . 
E 5 HOH X 49 249 266 HOH HOH . 
E 5 HOH X 50 250 270 HOH HOH . 
E 5 HOH X 51 251 271 HOH HOH . 
E 5 HOH X 52 252 272 HOH HOH . 
E 5 HOH X 53 253 273 HOH HOH . 
E 5 HOH X 54 254 274 HOH HOH . 
E 5 HOH X 55 255 275 HOH HOH . 
E 5 HOH X 56 256 276 HOH HOH . 
E 5 HOH X 57 257 278 HOH HOH . 
E 5 HOH X 58 258 279 HOH HOH . 
E 5 HOH X 59 259 280 HOH HOH . 
E 5 HOH X 60 260 281 HOH HOH . 
E 5 HOH X 61 261 285 HOH HOH . 
E 5 HOH X 62 262 286 HOH HOH . 
E 5 HOH X 63 263 288 HOH HOH . 
E 5 HOH X 64 264 292 HOH HOH . 
E 5 HOH X 65 265 293 HOH HOH . 
E 5 HOH X 66 266 295 HOH HOH . 
E 5 HOH X 67 267 296 HOH HOH . 
E 5 HOH X 68 268 298 HOH HOH . 
E 5 HOH X 69 269 299 HOH HOH . 
E 5 HOH X 70 270 300 HOH HOH . 
E 5 HOH X 71 271 301 HOH HOH . 
E 5 HOH X 72 272 302 HOH HOH . 
E 5 HOH X 73 273 303 HOH HOH . 
E 5 HOH X 74 274 305 HOH HOH . 
E 5 HOH X 75 275 306 HOH HOH . 
E 5 HOH X 76 276 308 HOH HOH . 
E 5 HOH X 77 277 309 HOH HOH . 
E 5 HOH X 78 278 310 HOH HOH . 
E 5 HOH X 79 279 312 HOH HOH . 
E 5 HOH X 80 280 313 HOH HOH . 
E 5 HOH X 81 281 314 HOH HOH . 
E 5 HOH X 82 282 315 HOH HOH . 
E 5 HOH X 83 283 325 HOH HOH . 
E 5 HOH X 84 284 328 HOH HOH . 
E 5 HOH X 85 285 330 HOH HOH . 
E 5 HOH X 86 286 346 HOH HOH . 
E 5 HOH X 87 287 347 HOH HOH . 
E 5 HOH X 88 288 349 HOH HOH . 
E 5 HOH X 89 289 350 HOH HOH . 
E 5 HOH X 90 290 351 HOH HOH . 
E 5 HOH X 91 291 353 HOH HOH . 
E 5 HOH X 92 292 355 HOH HOH . 
E 5 HOH X 93 293 356 HOH HOH . 
E 5 HOH X 94 294 358 HOH HOH . 
E 5 HOH X 95 295 363 HOH HOH . 
E 5 HOH X 96 296 366 HOH HOH . 
E 5 HOH X 97 297 370 HOH HOH . 
E 5 HOH X 98 298 375 HOH HOH . 
E 5 HOH X 99 299 376 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 4 7.339 -20.232 44.754 1 31.23 ? C1 GOL 102 X 1 
HETATM 2 O O1 GOL . . . D 4 7.901 -20.336 46.073 1 23.65 ? O1 GOL 102 X 1 
HETATM 3 C C2 GOL . . . D 4 7.348 -18.792 44.209 1 33.83 ? C2 GOL 102 X 1 
HETATM 4 O O2 GOL . . . D 4 8.672 -18.337 43.979 1 34.08 ? O2 GOL 102 X 1 
HETATM 5 C C3 GOL . . . D 4 6.693 -18.707 42.835 1 37.57 ? C3 GOL 102 X 1 
HETATM 6 O O3 GOL . . . D 4 5.722 -17.673 42.829 1 39.16 ? O3 GOL 102 X 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           289 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           6 
#