data_4DPB
#
_model_server_result.job_id            rTP4DgLCK2g4kszKOsrXkw 
_model_server_result.datetime_utc      '2025-09-18 01:03:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4dpb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":100}' 
#
_entry.id    4DPB 
#
_exptl.entry_id    4DPB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              63.546 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'COPPER (II) ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4DPB 
_cell.length_a            29.187 
_cell.length_b            46.404 
_cell.length_c            56.808 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4DPB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A ND1 HIS 37 X HIS 37 1_555 B CU CU . X CU 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.972 ? 
metalc ? metalc2 A SG CYS 84 X CYS 84 1_555 B CU CU . X CU 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? 
metalc ? metalc3 A ND1 HIS 87 X HIS 87 1_555 B CU CU . X CU 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
#
_chem_comp.formula           'Cu 2' 
_chem_comp.formula_weight    63.546 
_chem_comp.id                CU 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'COPPER (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4DPB 
_atom_sites.fract_transf_matrix[1][1]    0.034262 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.02155 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017603 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CU X 1 100 100 CU CU . 
C 3 HOH X 1 1001 1001 HOH HOH . 
C 3 HOH X 2 1002 1002 HOH HOH . 
C 3 HOH X 3 1003 1003 HOH HOH . 
C 3 HOH X 4 1004 1004 HOH HOH . 
C 3 HOH X 5 1005 1005 HOH HOH . 
C 3 HOH X 6 1006 1006 HOH HOH . 
C 3 HOH X 7 1007 1007 HOH HOH . 
C 3 HOH X 8 1008 1008 HOH HOH . 
C 3 HOH X 9 1009 1009 HOH HOH . 
C 3 HOH X 10 1010 1010 HOH HOH . 
C 3 HOH X 11 1011 1011 HOH HOH . 
C 3 HOH X 12 1012 1012 HOH HOH . 
C 3 HOH X 13 1013 1013 HOH HOH . 
C 3 HOH X 14 1014 1014 HOH HOH . 
C 3 HOH X 15 1015 1016 HOH HOH . 
C 3 HOH X 16 1016 1017 HOH HOH . 
C 3 HOH X 17 1017 1018 HOH HOH . 
C 3 HOH X 18 1018 1019 HOH HOH . 
C 3 HOH X 19 1019 1020 HOH HOH . 
C 3 HOH X 20 1020 1021 HOH HOH . 
C 3 HOH X 21 1021 1022 HOH HOH . 
C 3 HOH X 22 1022 1023 HOH HOH . 
C 3 HOH X 23 1023 1024 HOH HOH . 
C 3 HOH X 24 1024 1025 HOH HOH . 
C 3 HOH X 25 1025 1026 HOH HOH . 
C 3 HOH X 26 1026 1027 HOH HOH . 
C 3 HOH X 27 1027 1028 HOH HOH . 
C 3 HOH X 28 1028 1029 HOH HOH . 
C 3 HOH X 29 1029 1030 HOH HOH . 
C 3 HOH X 30 1030 1031 HOH HOH . 
C 3 HOH X 31 1031 1032 HOH HOH . 
C 3 HOH X 32 1032 1033 HOH HOH . 
C 3 HOH X 33 1033 1034 HOH HOH . 
C 3 HOH X 34 1034 1035 HOH HOH . 
C 3 HOH X 35 1035 1036 HOH HOH . 
C 3 HOH X 36 1036 1037 HOH HOH . 
C 3 HOH X 37 1037 1038 HOH HOH . 
C 3 HOH X 38 1038 1039 HOH HOH . 
C 3 HOH X 39 1039 1040 HOH HOH . 
C 3 HOH X 40 1040 1041 HOH HOH . 
C 3 HOH X 41 1041 1042 HOH HOH . 
C 3 HOH X 42 1042 1043 HOH HOH . 
C 3 HOH X 43 1043 1044 HOH HOH . 
C 3 HOH X 44 1044 1045 HOH HOH . 
C 3 HOH X 45 1045 1046 HOH HOH . 
C 3 HOH X 46 1046 1047 HOH HOH . 
C 3 HOH X 47 1047 1048 HOH HOH . 
C 3 HOH X 48 1048 1049 HOH HOH . 
C 3 HOH X 49 1049 1050 HOH HOH . 
C 3 HOH X 50 1050 1051 HOH HOH . 
C 3 HOH X 51 1051 1052 HOH HOH . 
C 3 HOH X 52 1052 1053 HOH HOH . 
C 3 HOH X 53 1053 1054 HOH HOH . 
C 3 HOH X 54 1054 1055 HOH HOH . 
C 3 HOH X 55 1055 1056 HOH HOH . 
C 3 HOH X 56 1056 1057 HOH HOH . 
C 3 HOH X 57 1057 1058 HOH HOH . 
C 3 HOH X 58 1058 1059 HOH HOH . 
C 3 HOH X 59 1059 1060 HOH HOH . 
C 3 HOH X 60 1060 1061 HOH HOH . 
C 3 HOH X 61 1061 1062 HOH HOH . 
C 3 HOH X 62 1062 1063 HOH HOH . 
C 3 HOH X 63 1063 1064 HOH HOH . 
C 3 HOH X 64 1064 1065 HOH HOH . 
C 3 HOH X 65 1065 1066 HOH HOH . 
C 3 HOH X 66 1066 1067 HOH HOH . 
C 3 HOH X 67 1067 1069 HOH HOH . 
C 3 HOH X 68 1068 1070 HOH HOH . 
C 3 HOH X 69 1069 1071 HOH HOH . 
C 3 HOH X 70 1070 1072 HOH HOH . 
C 3 HOH X 71 1071 1073 HOH HOH . 
C 3 HOH X 72 1072 1074 HOH HOH . 
C 3 HOH X 73 1073 1075 HOH HOH . 
C 3 HOH X 74 1074 1076 HOH HOH . 
C 3 HOH X 75 1075 1077 HOH HOH . 
C 3 HOH X 76 1076 1078 HOH HOH . 
C 3 HOH X 77 1077 1079 HOH HOH . 
C 3 HOH X 78 1078 1080 HOH HOH . 
C 3 HOH X 79 1079 1081 HOH HOH . 
C 3 HOH X 80 1080 1082 HOH HOH . 
C 3 HOH X 81 1081 1083 HOH HOH . 
C 3 HOH X 82 1082 1084 HOH HOH . 
C 3 HOH X 83 1083 1085 HOH HOH . 
C 3 HOH X 84 1084 1088 HOH HOH . 
C 3 HOH X 85 1085 1089 HOH HOH . 
C 3 HOH X 86 1086 1090 HOH HOH . 
C 3 HOH X 87 1087 1092 HOH HOH . 
C 3 HOH X 88 1088 1093 HOH HOH . 
C 3 HOH X 89 1089 1094 HOH HOH . 
C 3 HOH X 90 1090 1095 HOH HOH . 
C 3 HOH X 91 1091 1096 HOH HOH . 
C 3 HOH X 92 1092 1097 HOH HOH . 
C 3 HOH X 93 1093 1098 HOH HOH . 
C 3 HOH X 94 1094 1099 HOH HOH . 
C 3 HOH X 95 1095 1100 HOH HOH . 
C 3 HOH X 96 1096 1101 HOH HOH . 
C 3 HOH X 97 1097 1102 HOH HOH . 
C 3 HOH X 98 1098 1103 HOH HOH . 
C 3 HOH X 99 1099 1104 HOH HOH . 
C 3 HOH X 100 1100 1106 HOH HOH . 
C 3 HOH X 101 1101 1107 HOH HOH . 
C 3 HOH X 102 1102 1108 HOH HOH . 
C 3 HOH X 103 1103 1109 HOH HOH . 
C 3 HOH X 104 1104 1110 HOH HOH . 
C 3 HOH X 105 1105 1111 HOH HOH . 
C 3 HOH X 106 1106 1112 HOH HOH . 
C 3 HOH X 107 1107 1113 HOH HOH . 
C 3 HOH X 108 1108 1114 HOH HOH . 
C 3 HOH X 109 1109 1115 HOH HOH . 
C 3 HOH X 110 1110 1116 HOH HOH . 
C 3 HOH X 111 1111 1117 HOH HOH . 
C 3 HOH X 112 1112 1118 HOH HOH . 
C 3 HOH X 113 1113 1119 HOH HOH . 
C 3 HOH X 114 1114 1121 HOH HOH . 
C 3 HOH X 115 1115 1122 HOH HOH . 
C 3 HOH X 116 1116 1123 HOH HOH . 
C 3 HOH X 117 1117 1124 HOH HOH . 
C 3 HOH X 118 1118 1125 HOH HOH . 
C 3 HOH X 119 1119 1126 HOH HOH . 
C 3 HOH X 120 1120 1127 HOH HOH . 
C 3 HOH X 121 1121 1128 HOH HOH . 
C 3 HOH X 122 1122 1129 HOH HOH . 
C 3 HOH X 123 1123 1130 HOH HOH . 
C 3 HOH X 124 1124 1131 HOH HOH . 
C 3 HOH X 125 1125 1134 HOH HOH . 
C 3 HOH X 126 1126 1135 HOH HOH . 
C 3 HOH X 127 1127 1136 HOH HOH . 
C 3 HOH X 128 1128 1138 HOH HOH . 
C 3 HOH X 129 1129 1139 HOH HOH . 
C 3 HOH X 130 1130 1140 HOH HOH . 
C 3 HOH X 131 1131 1142 HOH HOH . 
C 3 HOH X 132 1132 1144 HOH HOH . 
C 3 HOH X 133 1133 1145 HOH HOH . 
C 3 HOH X 134 1134 1147 HOH HOH . 
C 3 HOH X 135 1135 1148 HOH HOH . 
C 3 HOH X 136 1136 1150 HOH HOH . 
C 3 HOH X 137 1137 1151 HOH HOH . 
C 3 HOH X 138 1138 1152 HOH HOH . 
C 3 HOH X 139 1139 1155 HOH HOH . 
C 3 HOH X 140 1140 1156 HOH HOH . 
C 3 HOH X 141 1141 1157 HOH HOH . 
C 3 HOH X 142 1142 1158 HOH HOH . 
C 3 HOH X 143 1143 1161 HOH HOH . 
C 3 HOH X 144 1144 1164 HOH HOH . 
C 3 HOH X 145 1145 1166 HOH HOH . 
C 3 HOH X 146 1146 1167 HOH HOH . 
C 3 HOH X 147 1147 1168 HOH HOH . 
C 3 HOH X 148 1148 1173 HOH HOH . 
C 3 HOH X 149 1149 1174 HOH HOH . 
C 3 HOH X 150 1150 1175 HOH HOH . 
C 3 HOH X 151 1151 1181 HOH HOH . 
C 3 HOH X 152 1152 1183 HOH HOH . 
C 3 HOH X 153 1153 1184 HOH HOH . 
C 3 HOH X 154 1154 1186 HOH HOH . 
C 3 HOH X 155 1155 1188 HOH HOH . 
C 3 HOH X 156 1156 1189 HOH HOH . 
C 3 HOH X 157 1157 1192 HOH HOH . 
C 3 HOH X 158 1158 1193 HOH HOH . 
C 3 HOH X 159 1159 1195 HOH HOH . 
C 3 HOH X 160 1160 1196 HOH HOH . 
C 3 HOH X 161 1161 1199 HOH HOH . 
C 3 HOH X 162 1162 1200 HOH HOH . 
C 3 HOH X 163 1163 1205 HOH HOH . 
C 3 HOH X 164 1164 1206 HOH HOH . 
C 3 HOH X 165 1165 1210 HOH HOH . 
C 3 HOH X 166 1166 3001 HOH HOH . 
C 3 HOH X 167 1167 3002 HOH HOH . 
C 3 HOH X 168 1168 3003 HOH HOH . 
C 3 HOH X 169 1169 3007 HOH HOH . 
C 3 HOH X 170 1170 3008 HOH HOH . 
C 3 HOH X 171 1171 3010 HOH HOH . 
C 3 HOH X 172 1172 3011 HOH HOH . 
C 3 HOH X 173 1173 3013 HOH HOH . 
C 3 HOH X 174 1174 3022 HOH HOH . 
C 3 HOH X 175 1175 3023 HOH HOH . 
C 3 HOH X 176 1176 3027 HOH HOH . 
C 3 HOH X 177 1177 3028 HOH HOH . 
C 3 HOH X 178 1178 3029 HOH HOH . 
C 3 HOH X 179 1179 3031 HOH HOH . 
C 3 HOH X 180 1180 3032 HOH HOH . 
C 3 HOH X 181 1181 3033 HOH HOH . 
C 3 HOH X 182 1182 3036 HOH HOH . 
C 3 HOH X 183 1183 3039 HOH HOH . 
C 3 HOH X 184 1184 3040 HOH HOH . 
C 3 HOH X 185 1185 3042 HOH HOH . 
C 3 HOH X 186 1186 3046 HOH HOH . 
C 3 HOH X 187 1187 3047 HOH HOH . 
C 3 HOH X 188 1188 3048 HOH HOH . 
C 3 HOH X 189 1189 3051 HOH HOH . 
C 3 HOH X 190 1190 3054 HOH HOH . 
C 3 HOH X 191 1191 3056 HOH HOH . 
C 3 HOH X 192 1192 3061 HOH HOH . 
C 3 HOH X 193 1193 3066 HOH HOH . 
C 3 HOH X 194 1194 3068 HOH HOH . 
C 3 HOH X 195 1195 3073 HOH HOH . 
C 3 HOH X 196 1196 3075 HOH HOH . 
C 3 HOH X 197 1197 3076 HOH HOH . 
C 3 HOH X 198 1198 3081 HOH HOH . 
C 3 HOH X 199 1199 3084 HOH HOH . 
C 3 HOH X 200 1200 3085 HOH HOH . 
C 3 HOH X 201 1201 3086 HOH HOH . 
C 3 HOH X 202 1202 3088 HOH HOH . 
C 3 HOH X 203 1203 3089 HOH HOH . 
C 3 HOH X 204 1204 3093 HOH HOH . 
C 3 HOH X 205 1205 3097 HOH HOH . 
C 3 HOH X 206 1206 3109 HOH HOH . 
C 3 HOH X 207 1207 3201 HOH HOH . 
C 3 HOH X 208 1208 3202 HOH HOH . 
C 3 HOH X 209 1209 3204 HOH HOH . 
C 3 HOH X 210 1210 3205 HOH HOH . 
C 3 HOH X 211 1211 3206 HOH HOH . 
C 3 HOH X 212 1212 3301 HOH HOH . 
C 3 HOH X 213 1213 3401 HOH HOH . 
C 3 HOH X 214 1214 3402 HOH HOH . 
C 3 HOH X 215 1215 3404 HOH HOH . 
C 3 HOH X 216 1216 3406 HOH HOH . 
C 3 HOH X 217 1217 3410 HOH HOH . 
C 3 HOH X 218 1218 3408 HOH HOH . 
C 3 HOH X 219 1219 3411 HOH HOH . 
C 3 HOH X 220 1220 3412 HOH HOH . 
C 3 HOH X 221 1221 3413 HOH HOH . 
C 3 HOH X 222 1222 3414 HOH HOH . 
C 3 HOH X 223 1223 3415 HOH HOH . 
C 3 HOH X 224 1224 3416 HOH HOH . 
C 3 HOH X 225 1225 3417 HOH HOH . 
C 3 HOH X 226 1226 3418 HOH HOH . 
C 3 HOH X 227 1227 3419 HOH HOH . 
C 3 HOH X 228 1228 3420 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CU 
_atom_site.label_atom_id         CU 
_atom_site.label_comp_id         CU 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         B 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               22.434 
_atom_site.Cartn_y               11.439 
_atom_site.Cartn_z               10.246 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        6.18 
_atom_site.pdbx_formal_charge    2 
_atom_site.auth_atom_id          CU 
_atom_site.auth_comp_id          CU 
_atom_site.auth_seq_id           100 
_atom_site.auth_asym_id          X 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           347 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           1 
#