data_4DPT
#
_model_server_result.job_id            3uyEV0s4HkR5Z2pUuxjSyw 
_model_server_result.datetime_utc      '2024-11-04 23:01:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4dpt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":401}' 
#
_entry.id    4DPT 
#
_exptl.entry_id    4DPT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          122.34 
_cell.angle_gamma         90 
_cell.entry_id            4DPT 
_cell.length_a            102.251 
_cell.length_b            82.46 
_cell.length_c            93.649 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4DPT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,F 1 1 
B,D,E,G 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 209 n n 
C1 C2 GOL sing 210 n n 
C1 H11 GOL sing 211 n n 
C1 H12 GOL sing 212 n n 
O1 HO1 GOL sing 213 n n 
C2 O2 GOL sing 214 n n 
C2 C3 GOL sing 215 n n 
C2 H2 GOL sing 216 n n 
O2 HO2 GOL sing 217 n n 
C3 O3 GOL sing 218 n n 
C3 H31 GOL sing 219 n n 
C3 H32 GOL sing 220 n n 
O3 HO3 GOL sing 221 n n 
#
_atom_sites.entry_id                     4DPT 
_atom_sites.fract_transf_matrix[1][1]    0.00978 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.006192 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012127 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012639 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GOL A 1 401 3968 GOL GOL . 
D 3 FM0 B 1 401 1 FM0 DRG . 
E 4 AGS B 1 402 1006 AGS AGS . 
F 5 HOH A 1 501 1 HOH HOH . 
F 5 HOH A 2 502 3 HOH HOH . 
F 5 HOH A 3 503 4 HOH HOH . 
F 5 HOH A 4 504 5 HOH HOH . 
F 5 HOH A 5 505 6 HOH HOH . 
F 5 HOH A 6 506 7 HOH HOH . 
F 5 HOH A 7 507 10 HOH HOH . 
F 5 HOH A 8 508 12 HOH HOH . 
F 5 HOH A 9 509 15 HOH HOH . 
F 5 HOH A 10 510 17 HOH HOH . 
F 5 HOH A 11 511 18 HOH HOH . 
F 5 HOH A 12 512 19 HOH HOH . 
F 5 HOH A 13 513 20 HOH HOH . 
F 5 HOH A 14 514 23 HOH HOH . 
F 5 HOH A 15 515 24 HOH HOH . 
F 5 HOH A 16 516 25 HOH HOH . 
F 5 HOH A 17 517 26 HOH HOH . 
F 5 HOH A 18 518 31 HOH HOH . 
F 5 HOH A 19 519 32 HOH HOH . 
F 5 HOH A 20 520 33 HOH HOH . 
F 5 HOH A 21 521 34 HOH HOH . 
F 5 HOH A 22 522 36 HOH HOH . 
F 5 HOH A 23 523 37 HOH HOH . 
F 5 HOH A 24 524 39 HOH HOH . 
F 5 HOH A 25 525 40 HOH HOH . 
F 5 HOH A 26 526 41 HOH HOH . 
F 5 HOH A 27 527 44 HOH HOH . 
F 5 HOH A 28 528 46 HOH HOH . 
F 5 HOH A 29 529 49 HOH HOH . 
F 5 HOH A 30 530 51 HOH HOH . 
F 5 HOH A 31 531 54 HOH HOH . 
F 5 HOH A 32 532 57 HOH HOH . 
F 5 HOH A 33 533 58 HOH HOH . 
F 5 HOH A 34 534 59 HOH HOH . 
F 5 HOH A 35 535 60 HOH HOH . 
F 5 HOH A 36 536 61 HOH HOH . 
F 5 HOH A 37 537 63 HOH HOH . 
F 5 HOH A 38 538 64 HOH HOH . 
F 5 HOH A 39 539 65 HOH HOH . 
F 5 HOH A 40 540 69 HOH HOH . 
F 5 HOH A 41 541 72 HOH HOH . 
F 5 HOH A 42 542 73 HOH HOH . 
F 5 HOH A 43 543 76 HOH HOH . 
F 5 HOH A 44 544 77 HOH HOH . 
F 5 HOH A 45 545 78 HOH HOH . 
F 5 HOH A 46 546 79 HOH HOH . 
F 5 HOH A 47 547 82 HOH HOH . 
F 5 HOH A 48 548 84 HOH HOH . 
F 5 HOH A 49 549 87 HOH HOH . 
F 5 HOH A 50 550 89 HOH HOH . 
F 5 HOH A 51 551 90 HOH HOH . 
F 5 HOH A 52 552 91 HOH HOH . 
F 5 HOH A 53 553 92 HOH HOH . 
F 5 HOH A 54 554 93 HOH HOH . 
F 5 HOH A 55 555 95 HOH HOH . 
F 5 HOH A 56 556 97 HOH HOH . 
F 5 HOH A 57 557 98 HOH HOH . 
F 5 HOH A 58 558 99 HOH HOH . 
F 5 HOH A 59 559 100 HOH HOH . 
F 5 HOH A 60 560 103 HOH HOH . 
F 5 HOH A 61 561 104 HOH HOH . 
F 5 HOH A 62 562 105 HOH HOH . 
F 5 HOH A 63 563 107 HOH HOH . 
F 5 HOH A 64 564 108 HOH HOH . 
F 5 HOH A 65 565 111 HOH HOH . 
F 5 HOH A 66 566 113 HOH HOH . 
F 5 HOH A 67 567 116 HOH HOH . 
F 5 HOH A 68 568 118 HOH HOH . 
F 5 HOH A 69 569 119 HOH HOH . 
F 5 HOH A 70 570 120 HOH HOH . 
F 5 HOH A 71 571 121 HOH HOH . 
F 5 HOH A 72 572 122 HOH HOH . 
F 5 HOH A 73 573 123 HOH HOH . 
F 5 HOH A 74 574 125 HOH HOH . 
F 5 HOH A 75 575 126 HOH HOH . 
F 5 HOH A 76 576 128 HOH HOH . 
F 5 HOH A 77 577 129 HOH HOH . 
F 5 HOH A 78 578 130 HOH HOH . 
F 5 HOH A 79 579 131 HOH HOH . 
F 5 HOH A 80 580 133 HOH HOH . 
F 5 HOH A 81 581 134 HOH HOH . 
F 5 HOH A 82 582 135 HOH HOH . 
F 5 HOH A 83 583 136 HOH HOH . 
F 5 HOH A 84 584 139 HOH HOH . 
F 5 HOH A 85 585 141 HOH HOH . 
F 5 HOH A 86 586 144 HOH HOH . 
F 5 HOH A 87 587 145 HOH HOH . 
F 5 HOH A 88 588 147 HOH HOH . 
F 5 HOH A 89 589 148 HOH HOH . 
F 5 HOH A 90 590 150 HOH HOH . 
F 5 HOH A 91 591 151 HOH HOH . 
F 5 HOH A 92 592 152 HOH HOH . 
F 5 HOH A 93 593 153 HOH HOH . 
F 5 HOH A 94 594 154 HOH HOH . 
F 5 HOH A 95 595 155 HOH HOH . 
F 5 HOH A 96 596 156 HOH HOH . 
F 5 HOH A 97 597 157 HOH HOH . 
F 5 HOH A 98 598 158 HOH HOH . 
F 5 HOH A 99 599 159 HOH HOH . 
F 5 HOH A 100 600 160 HOH HOH . 
F 5 HOH A 101 601 161 HOH HOH . 
F 5 HOH A 102 602 162 HOH HOH . 
F 5 HOH A 103 603 163 HOH HOH . 
F 5 HOH A 104 604 164 HOH HOH . 
F 5 HOH A 105 605 166 HOH HOH . 
F 5 HOH A 106 606 168 HOH HOH . 
F 5 HOH A 107 607 169 HOH HOH . 
F 5 HOH A 108 608 171 HOH HOH . 
F 5 HOH A 109 609 173 HOH HOH . 
F 5 HOH A 110 610 175 HOH HOH . 
F 5 HOH A 111 611 176 HOH HOH . 
F 5 HOH A 112 612 178 HOH HOH . 
F 5 HOH A 113 613 179 HOH HOH . 
F 5 HOH A 114 614 180 HOH HOH . 
F 5 HOH A 115 615 181 HOH HOH . 
F 5 HOH A 116 616 183 HOH HOH . 
F 5 HOH A 117 617 184 HOH HOH . 
F 5 HOH A 118 618 186 HOH HOH . 
F 5 HOH A 119 619 187 HOH HOH . 
F 5 HOH A 120 620 188 HOH HOH . 
F 5 HOH A 121 621 189 HOH HOH . 
F 5 HOH A 122 622 190 HOH HOH . 
F 5 HOH A 123 623 191 HOH HOH . 
F 5 HOH A 124 624 192 HOH HOH . 
F 5 HOH A 125 625 193 HOH HOH . 
F 5 HOH A 126 626 194 HOH HOH . 
F 5 HOH A 127 627 197 HOH HOH . 
F 5 HOH A 128 628 201 HOH HOH . 
F 5 HOH A 129 629 202 HOH HOH . 
F 5 HOH A 130 630 203 HOH HOH . 
F 5 HOH A 131 631 204 HOH HOH . 
F 5 HOH A 132 632 205 HOH HOH . 
F 5 HOH A 133 633 207 HOH HOH . 
F 5 HOH A 134 634 208 HOH HOH . 
F 5 HOH A 135 635 211 HOH HOH . 
F 5 HOH A 136 636 213 HOH HOH . 
F 5 HOH A 137 637 214 HOH HOH . 
F 5 HOH A 138 638 215 HOH HOH . 
F 5 HOH A 139 639 217 HOH HOH . 
F 5 HOH A 140 640 218 HOH HOH . 
F 5 HOH A 141 641 219 HOH HOH . 
F 5 HOH A 142 642 221 HOH HOH . 
F 5 HOH A 143 643 223 HOH HOH . 
F 5 HOH A 144 644 225 HOH HOH . 
F 5 HOH A 145 645 226 HOH HOH . 
F 5 HOH A 146 646 228 HOH HOH . 
F 5 HOH A 147 647 229 HOH HOH . 
F 5 HOH A 148 648 230 HOH HOH . 
F 5 HOH A 149 649 232 HOH HOH . 
F 5 HOH A 150 650 233 HOH HOH . 
F 5 HOH A 151 651 234 HOH HOH . 
F 5 HOH A 152 652 240 HOH HOH . 
F 5 HOH A 153 653 243 HOH HOH . 
F 5 HOH A 154 654 245 HOH HOH . 
F 5 HOH A 155 655 246 HOH HOH . 
F 5 HOH A 156 656 248 HOH HOH . 
F 5 HOH A 157 657 249 HOH HOH . 
F 5 HOH A 158 658 250 HOH HOH . 
G 5 HOH B 1 501 2 HOH HOH . 
G 5 HOH B 2 502 8 HOH HOH . 
G 5 HOH B 3 503 9 HOH HOH . 
G 5 HOH B 4 504 11 HOH HOH . 
G 5 HOH B 5 505 13 HOH HOH . 
G 5 HOH B 6 506 14 HOH HOH . 
G 5 HOH B 7 507 16 HOH HOH . 
G 5 HOH B 8 508 21 HOH HOH . 
G 5 HOH B 9 509 22 HOH HOH . 
G 5 HOH B 10 510 27 HOH HOH . 
G 5 HOH B 11 511 28 HOH HOH . 
G 5 HOH B 12 512 29 HOH HOH . 
G 5 HOH B 13 513 30 HOH HOH . 
G 5 HOH B 14 514 35 HOH HOH . 
G 5 HOH B 15 515 38 HOH HOH . 
G 5 HOH B 16 516 42 HOH HOH . 
G 5 HOH B 17 517 43 HOH HOH . 
G 5 HOH B 18 518 45 HOH HOH . 
G 5 HOH B 19 519 47 HOH HOH . 
G 5 HOH B 20 520 48 HOH HOH . 
G 5 HOH B 21 521 50 HOH HOH . 
G 5 HOH B 22 522 52 HOH HOH . 
G 5 HOH B 23 523 53 HOH HOH . 
G 5 HOH B 24 524 55 HOH HOH . 
G 5 HOH B 25 525 56 HOH HOH . 
G 5 HOH B 26 526 62 HOH HOH . 
G 5 HOH B 27 527 66 HOH HOH . 
G 5 HOH B 28 528 67 HOH HOH . 
G 5 HOH B 29 529 68 HOH HOH . 
G 5 HOH B 30 530 70 HOH HOH . 
G 5 HOH B 31 531 71 HOH HOH . 
G 5 HOH B 32 532 74 HOH HOH . 
G 5 HOH B 33 533 75 HOH HOH . 
G 5 HOH B 34 534 80 HOH HOH . 
G 5 HOH B 35 535 81 HOH HOH . 
G 5 HOH B 36 536 83 HOH HOH . 
G 5 HOH B 37 537 85 HOH HOH . 
G 5 HOH B 38 538 86 HOH HOH . 
G 5 HOH B 39 539 88 HOH HOH . 
G 5 HOH B 40 540 94 HOH HOH . 
G 5 HOH B 41 541 96 HOH HOH . 
G 5 HOH B 42 542 101 HOH HOH . 
G 5 HOH B 43 543 102 HOH HOH . 
G 5 HOH B 44 544 106 HOH HOH . 
G 5 HOH B 45 545 109 HOH HOH . 
G 5 HOH B 46 546 110 HOH HOH . 
G 5 HOH B 47 547 112 HOH HOH . 
G 5 HOH B 48 548 114 HOH HOH . 
G 5 HOH B 49 549 115 HOH HOH . 
G 5 HOH B 50 550 117 HOH HOH . 
G 5 HOH B 51 551 124 HOH HOH . 
G 5 HOH B 52 552 127 HOH HOH . 
G 5 HOH B 53 553 132 HOH HOH . 
G 5 HOH B 54 554 137 HOH HOH . 
G 5 HOH B 55 555 138 HOH HOH . 
G 5 HOH B 56 556 140 HOH HOH . 
G 5 HOH B 57 557 142 HOH HOH . 
G 5 HOH B 58 558 143 HOH HOH . 
G 5 HOH B 59 559 146 HOH HOH . 
G 5 HOH B 60 560 149 HOH HOH . 
G 5 HOH B 61 561 165 HOH HOH . 
G 5 HOH B 62 562 167 HOH HOH . 
G 5 HOH B 63 563 170 HOH HOH . 
G 5 HOH B 64 564 172 HOH HOH . 
G 5 HOH B 65 565 174 HOH HOH . 
G 5 HOH B 66 566 177 HOH HOH . 
G 5 HOH B 67 567 182 HOH HOH . 
G 5 HOH B 68 568 185 HOH HOH . 
G 5 HOH B 69 569 195 HOH HOH . 
G 5 HOH B 70 570 196 HOH HOH . 
G 5 HOH B 71 571 198 HOH HOH . 
G 5 HOH B 72 572 199 HOH HOH . 
G 5 HOH B 73 573 200 HOH HOH . 
G 5 HOH B 74 574 206 HOH HOH . 
G 5 HOH B 75 575 209 HOH HOH . 
G 5 HOH B 76 576 210 HOH HOH . 
G 5 HOH B 77 577 212 HOH HOH . 
G 5 HOH B 78 578 216 HOH HOH . 
G 5 HOH B 79 579 220 HOH HOH . 
G 5 HOH B 80 580 222 HOH HOH . 
G 5 HOH B 81 581 224 HOH HOH . 
G 5 HOH B 82 582 227 HOH HOH . 
G 5 HOH B 83 583 231 HOH HOH . 
G 5 HOH B 84 584 235 HOH HOH . 
G 5 HOH B 85 585 236 HOH HOH . 
G 5 HOH B 86 586 237 HOH HOH . 
G 5 HOH B 87 587 238 HOH HOH . 
G 5 HOH B 88 588 239 HOH HOH . 
G 5 HOH B 89 589 241 HOH HOH . 
G 5 HOH B 90 590 242 HOH HOH . 
G 5 HOH B 91 591 244 HOH HOH . 
G 5 HOH B 92 592 247 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . C 2 -16.591 -10.869 28.039 0.9 40.6 ? C1 GOL 401 A 1 
HETATM 2 O O1 GOL . . . C 2 -17.944 -11.293 27.832 0.9 35.35 ? O1 GOL 401 A 1 
HETATM 3 C C2 GOL . . . C 2 -15.885 -10.563 26.718 0.9 37.47 ? C2 GOL 401 A 1 
HETATM 4 O O2 GOL . . . C 2 -15.457 -9.228 26.805 0.9 39.45 ? O2 GOL 401 A 1 
HETATM 5 C C3 GOL . . . C 2 -14.645 -11.429 26.452 0.9 38.88 ? C3 GOL 401 A 1 
HETATM 6 O O3 GOL . . . C 2 -14.452 -11.579 25.05 0.9 30.86 ? O3 GOL 401 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           281 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           6 
#