data_4DQ2 # _model_server_result.job_id nOl4b7abyysdEvUSi08mtA _model_server_result.datetime_utc '2025-01-11 09:05:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4dq2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":500}' # _entry.id 4DQ2 # _exptl.entry_id 4DQ2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 559.533 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '((2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3,4-DIHYDROXY-TETRAHYDROFURAN-2-YL)METHYL 5-((3AS,4S,6AR)-2-OXO-HEXAHYDRO-1H-THIENO[3,4-D]IMIDAZOL-4-YL)PENTYL HYDROGEN PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4DQ2 _cell.length_a 94.598 _cell.length_b 94.598 _cell.length_c 130.626 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4DQ2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 94.598 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H30 N7 O8 P S' _chem_comp.formula_weight 559.533 _chem_comp.id BTX _chem_comp.mon_nstd_flag . _chem_comp.name '((2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3,4-DIHYDROXY-TETRAHYDROFURAN-2-YL)METHYL 5-((3AS,4S,6AR)-2-OXO-HEXAHYDRO-1H-THIENO[3,4-D]IMIDAZOL-4-YL)PENTYL HYDROGEN PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms BIOTINOL-5-AMP # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P BTX doub 70 n n P O2P BTX sing 71 n n P O5' BTX sing 72 n n P OBB BTX sing 73 n n O2P H2P BTX sing 74 n n O5' C5' BTX sing 75 n n C5' C4' BTX sing 76 n n C5' "H5'1" BTX sing 77 n n C5' "H5'2" BTX sing 78 n n C4' O4' BTX sing 79 n n C4' C3' BTX sing 80 n n C4' H4' BTX sing 81 n n O4' C1' BTX sing 82 n n C3' O3' BTX sing 83 n n C3' C2' BTX sing 84 n n C3' H3' BTX sing 85 n n O3' H3 BTX sing 86 n n C2' O2' BTX sing 87 n n C2' C1' BTX sing 88 n n C2' H1 BTX sing 89 n n O2' H2' BTX sing 90 n n C1' N9 BTX sing 91 n n C1' H1' BTX sing 92 n n N9 C8 BTX sing 93 n y N9 C4 BTX sing 94 n y C8 N7 BTX doub 95 n y C8 H8 BTX sing 96 n n N7 C5 BTX sing 97 n y C5 C6 BTX sing 98 n y C5 C4 BTX doub 99 n y C6 N6 BTX sing 100 n n C6 N1 BTX doub 101 n y N6 HN61 BTX sing 102 n n N6 HN62 BTX sing 103 n n N1 C2 BTX sing 104 n y C2 N3 BTX doub 105 n y C2 H4 BTX sing 106 n n N3 C4 BTX sing 107 n y CBB OBB BTX sing 108 n n CBB CAB BTX sing 109 n n CBB H111 BTX sing 110 n n CBB H112 BTX sing 111 n n CAB C9B BTX sing 112 n n CAB H101 BTX sing 113 n n CAB H102 BTX sing 114 n n C9B C8B BTX sing 115 n n C9B H9B1 BTX sing 116 n n C9B H9B2 BTX sing 117 n n C8B C7B BTX sing 118 n n C8B H8B1 BTX sing 119 n n C8B H8B2 BTX sing 120 n n C7B C2B BTX sing 121 n n C7B H7B1 BTX sing 122 n n C7B H7B2 BTX sing 123 n n C2B S1B BTX sing 124 n n C2B C4B BTX sing 125 n n C2B H2B BTX sing 126 n n S1B C6B BTX sing 127 n n C6B C5B BTX sing 128 n n C6B H6B1 BTX sing 129 n n C6B H6B2 BTX sing 130 n n C5B N1B BTX sing 131 n n C5B C4B BTX sing 132 n n C5B H5B BTX sing 133 n n N1B C3B BTX sing 134 n n N1B H1B BTX sing 135 n n C3B O3B BTX doub 136 n n C3B N2B BTX sing 137 n n N2B C4B BTX sing 138 n n N2B H2 BTX sing 139 n n C4B H4B BTX sing 140 n n # _atom_sites.entry_id 4DQ2 _atom_sites.fract_transf_matrix[1][1] 0.010571 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010571 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007655 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BTX A 1 500 500 BTX BTX . C 3 HOH A 1 601 1 HOH HOH . C 3 HOH A 2 602 2 HOH HOH . C 3 HOH A 3 603 3 HOH HOH . C 3 HOH A 4 604 4 HOH HOH . C 3 HOH A 5 605 5 HOH HOH . C 3 HOH A 6 606 6 HOH HOH . C 3 HOH A 7 607 7 HOH HOH . C 3 HOH A 8 608 8 HOH HOH . C 3 HOH A 9 609 9 HOH HOH . C 3 HOH A 10 610 10 HOH HOH . C 3 HOH A 11 611 11 HOH HOH . C 3 HOH A 12 612 12 HOH HOH . C 3 HOH A 13 613 13 HOH HOH . C 3 HOH A 14 614 14 HOH HOH . C 3 HOH A 15 615 15 HOH HOH . C 3 HOH A 16 616 16 HOH HOH . C 3 HOH A 17 617 17 HOH HOH . C 3 HOH A 18 618 18 HOH HOH . C 3 HOH A 19 619 19 HOH HOH . C 3 HOH A 20 620 20 HOH HOH . C 3 HOH A 21 621 21 HOH HOH . C 3 HOH A 22 622 22 HOH HOH . C 3 HOH A 23 623 23 HOH HOH . C 3 HOH A 24 624 24 HOH HOH . C 3 HOH A 25 625 25 HOH HOH . C 3 HOH A 26 626 26 HOH HOH . C 3 HOH A 27 627 27 HOH HOH . C 3 HOH A 28 628 28 HOH HOH . C 3 HOH A 29 629 29 HOH HOH . C 3 HOH A 30 630 30 HOH HOH . C 3 HOH A 31 631 31 HOH HOH . C 3 HOH A 32 632 32 HOH HOH . C 3 HOH A 33 633 33 HOH HOH . C 3 HOH A 34 634 34 HOH HOH . C 3 HOH A 35 635 35 HOH HOH . C 3 HOH A 36 636 36 HOH HOH . C 3 HOH A 37 637 37 HOH HOH . C 3 HOH A 38 638 38 HOH HOH . C 3 HOH A 39 639 39 HOH HOH . C 3 HOH A 40 640 40 HOH HOH . C 3 HOH A 41 641 41 HOH HOH . C 3 HOH A 42 642 42 HOH HOH . C 3 HOH A 43 643 43 HOH HOH . C 3 HOH A 44 644 44 HOH HOH . C 3 HOH A 45 645 45 HOH HOH . C 3 HOH A 46 646 46 HOH HOH . C 3 HOH A 47 647 47 HOH HOH . C 3 HOH A 48 648 48 HOH HOH . C 3 HOH A 49 649 49 HOH HOH . C 3 HOH A 50 650 50 HOH HOH . C 3 HOH A 51 651 51 HOH HOH . C 3 HOH A 52 652 52 HOH HOH . C 3 HOH A 53 653 53 HOH HOH . C 3 HOH A 54 654 54 HOH HOH . C 3 HOH A 55 655 55 HOH HOH . C 3 HOH A 56 656 56 HOH HOH . C 3 HOH A 57 657 57 HOH HOH . C 3 HOH A 58 658 58 HOH HOH . C 3 HOH A 59 659 59 HOH HOH . C 3 HOH A 60 660 60 HOH HOH . C 3 HOH A 61 661 61 HOH HOH . C 3 HOH A 62 662 62 HOH HOH . C 3 HOH A 63 663 63 HOH HOH . C 3 HOH A 64 664 64 HOH HOH . C 3 HOH A 65 665 65 HOH HOH . C 3 HOH A 66 666 66 HOH HOH . C 3 HOH A 67 667 67 HOH HOH . C 3 HOH A 68 668 68 HOH HOH . C 3 HOH A 69 669 69 HOH HOH . C 3 HOH A 70 670 70 HOH HOH . C 3 HOH A 71 671 71 HOH HOH . C 3 HOH A 72 672 72 HOH HOH . C 3 HOH A 73 673 73 HOH HOH . C 3 HOH A 74 674 74 HOH HOH . C 3 HOH A 75 675 75 HOH HOH . C 3 HOH A 76 676 76 HOH HOH . C 3 HOH A 77 677 77 HOH HOH . C 3 HOH A 78 678 78 HOH HOH . C 3 HOH A 79 679 79 HOH HOH . C 3 HOH A 80 680 80 HOH HOH . C 3 HOH A 81 681 81 HOH HOH . C 3 HOH A 82 682 82 HOH HOH . C 3 HOH A 83 683 83 HOH HOH . C 3 HOH A 84 684 84 HOH HOH . C 3 HOH A 85 685 85 HOH HOH . C 3 HOH A 86 686 86 HOH HOH . C 3 HOH A 87 687 87 HOH HOH . C 3 HOH A 88 688 88 HOH HOH . C 3 HOH A 89 689 89 HOH HOH . C 3 HOH A 90 690 90 HOH HOH . C 3 HOH A 91 691 91 HOH HOH . C 3 HOH A 92 692 92 HOH HOH . C 3 HOH A 93 693 93 HOH HOH . C 3 HOH A 94 694 94 HOH HOH . C 3 HOH A 95 695 95 HOH HOH . C 3 HOH A 96 696 96 HOH HOH . C 3 HOH A 97 697 97 HOH HOH . C 3 HOH A 98 698 98 HOH HOH . C 3 HOH A 99 699 99 HOH HOH . C 3 HOH A 100 700 100 HOH HOH . C 3 HOH A 101 701 101 HOH HOH . C 3 HOH A 102 702 102 HOH HOH . C 3 HOH A 103 703 103 HOH HOH . C 3 HOH A 104 704 104 HOH HOH . C 3 HOH A 105 705 105 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P BTX . . . B 2 53.202 18.087 17.613 1 39.3 ? P BTX 500 A 1 HETATM 2 O O1P BTX . . . B 2 52.97 18.714 16.31 1 49.07 ? O1P BTX 500 A 1 HETATM 3 O O2P BTX . . . B 2 54.25 17.015 17.803 1 40.44 ? O2P BTX 500 A 1 HETATM 4 O O5' BTX . . . B 2 54.019 19.033 18.586 1 47.75 ? O5' BTX 500 A 1 HETATM 5 C C5' BTX . . . B 2 53.786 20.309 18.906 1 47.63 ? C5' BTX 500 A 1 HETATM 6 C C4' BTX . . . B 2 54.974 21.216 18.809 1 47.48 ? C4' BTX 500 A 1 HETATM 7 O O4' BTX . . . B 2 54.246 22.478 19.025 1 53.02 ? O4' BTX 500 A 1 HETATM 8 C C3' BTX . . . B 2 56.06 21.207 19.824 1 50.94 ? C3' BTX 500 A 1 HETATM 9 O O3' BTX . . . B 2 57.317 20.797 19.334 1 55.3 ? O3' BTX 500 A 1 HETATM 10 C C2' BTX . . . B 2 56.258 22.701 20.069 1 55.4 ? C2' BTX 500 A 1 HETATM 11 O O2' BTX . . . B 2 56.832 23.309 18.922 1 58.19 ? O2' BTX 500 A 1 HETATM 12 C C1' BTX . . . B 2 54.893 23.335 19.946 1 53.72 ? C1' BTX 500 A 1 HETATM 13 N N9 BTX . . . B 2 54.049 23.301 21.166 1 51.49 ? N9 BTX 500 A 1 HETATM 14 C C8 BTX . . . B 2 54.228 22.597 22.297 1 45.07 ? C8 BTX 500 A 1 HETATM 15 N N7 BTX . . . B 2 53.213 22.926 23.106 1 44 ? N7 BTX 500 A 1 HETATM 16 C C5 BTX . . . B 2 52.399 23.797 22.495 1 44.29 ? C5 BTX 500 A 1 HETATM 17 C C6 BTX . . . B 2 51.193 24.512 22.861 1 44.06 ? C6 BTX 500 A 1 HETATM 18 N N6 BTX . . . B 2 50.563 24.372 24.041 1 43.63 ? N6 BTX 500 A 1 HETATM 19 N N1 BTX . . . B 2 50.677 25.363 21.987 1 48.14 ? N1 BTX 500 A 1 HETATM 20 C C2 BTX . . . B 2 51.255 25.668 20.707 1 49.21 ? C2 BTX 500 A 1 HETATM 21 N N3 BTX . . . B 2 52.463 24.963 20.442 1 45.28 ? N3 BTX 500 A 1 HETATM 22 C C4 BTX . . . B 2 52.953 24.051 21.273 1 49.21 ? C4 BTX 500 A 1 HETATM 23 C CBB BTX . . . B 2 50.405 17.452 18.1 1 37.52 ? CBB BTX 500 A 1 HETATM 24 O OBB BTX . . . B 2 51.859 17.636 18.394 1 42.27 ? OBB BTX 500 A 1 HETATM 25 C CAB BTX . . . B 2 49.95 17.098 19.233 1 40.56 ? CAB BTX 500 A 1 HETATM 26 C C9B BTX . . . B 2 49.527 16.698 20.372 1 36.64 ? C9B BTX 500 A 1 HETATM 27 C C8B BTX . . . B 2 48.315 16.936 21.155 1 37.2 ? C8B BTX 500 A 1 HETATM 28 C C7B BTX . . . B 2 48.656 16.932 22.647 1 36.54 ? C7B BTX 500 A 1 HETATM 29 C C2B BTX . . . B 2 47.427 16.452 23.39 1 33.28 ? C2B BTX 500 A 1 HETATM 30 S S1B BTX . . . B 2 47.263 17.293 24.923 1 36.92 ? S1B BTX 500 A 1 HETATM 31 C C6B BTX . . . B 2 46.131 15.991 25.239 1 33.36 ? C6B BTX 500 A 1 HETATM 32 C C5B BTX . . . B 2 46.814 14.683 24.887 1 31.73 ? C5B BTX 500 A 1 HETATM 33 N N1B BTX . . . B 2 47.807 14.241 25.84 1 28.3 ? N1B BTX 500 A 1 HETATM 34 C C3B BTX . . . B 2 49.063 14.289 25.363 1 31.65 ? C3B BTX 500 A 1 HETATM 35 O O3B BTX . . . B 2 50.107 13.932 26.02 1 29.98 ? O3B BTX 500 A 1 HETATM 36 N N2B BTX . . . B 2 49.041 14.846 24.111 1 28.04 ? N2B BTX 500 A 1 HETATM 37 C C4B BTX . . . B 2 47.663 14.979 23.643 1 32.24 ? C4B BTX 500 A 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 37 #