data_4DQ9 # _model_server_result.job_id ltpGhN5VImH5XnUmvyJLzA _model_server_result.datetime_utc '2025-03-06 09:46:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4dq9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":202}' # _entry.id 4DQ9 # _exptl.entry_id 4DQ9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4DQ9 _cell.length_a 53.391 _cell.length_b 71.11 _cell.length_c 84.646 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4DQ9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 PISA monomeric 1 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G 1 1 A,C,D,F 2 1 B,E,G 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ARG 34 A ARG 60 1_555 C NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.016 ? metalc ? metalc2 A OD2 ASP 36 A ASP 62 1_555 C NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.724 ? metalc ? metalc3 A OG1 THR 43 A THR 69 1_555 C NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.628 ? metalc ? metalc4 A OE1 GLN 54 A GLN 80 1_555 D NA NA . A NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.732 ? metalc ? metalc5 A OE2 GLU 110 A GLU 136 1_555 D NA NA . A NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.941 ? metalc ? metalc6 D NA NA . A NA 202 1_555 F O HOH . A HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.784 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4DQ9 _atom_sites.fract_transf_matrix[1][1] 0.01873 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014063 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011814 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NA A 1 201 1 NA NA . D 2 NA A 1 202 2 NA NA . E 3 CL B 1 201 3 CL CL . F 4 HOH A 1 301 7 HOH HOH . F 4 HOH A 2 302 8 HOH HOH . F 4 HOH A 3 303 9 HOH HOH . F 4 HOH A 4 304 10 HOH HOH . F 4 HOH A 5 305 14 HOH HOH . F 4 HOH A 6 306 16 HOH HOH . F 4 HOH A 7 307 17 HOH HOH . F 4 HOH A 8 308 18 HOH HOH . F 4 HOH A 9 309 19 HOH HOH . F 4 HOH A 10 310 21 HOH HOH . F 4 HOH A 11 311 22 HOH HOH . F 4 HOH A 12 312 25 HOH HOH . F 4 HOH A 13 313 26 HOH HOH . F 4 HOH A 14 314 197 HOH HOH . F 4 HOH A 15 315 198 HOH HOH . F 4 HOH A 16 316 199 HOH HOH . F 4 HOH A 17 317 200 HOH HOH . F 4 HOH A 18 318 201 HOH HOH . F 4 HOH A 19 319 202 HOH HOH . F 4 HOH A 20 320 203 HOH HOH . F 4 HOH A 21 321 204 HOH HOH . F 4 HOH A 22 322 205 HOH HOH . F 4 HOH A 23 323 206 HOH HOH . F 4 HOH A 24 324 207 HOH HOH . F 4 HOH A 25 325 208 HOH HOH . F 4 HOH A 26 326 209 HOH HOH . F 4 HOH A 27 327 210 HOH HOH . F 4 HOH A 28 328 211 HOH HOH . F 4 HOH A 29 329 212 HOH HOH . F 4 HOH A 30 330 213 HOH HOH . F 4 HOH A 31 331 214 HOH HOH . F 4 HOH A 32 332 215 HOH HOH . F 4 HOH A 33 333 216 HOH HOH . F 4 HOH A 34 334 217 HOH HOH . F 4 HOH A 35 335 218 HOH HOH . F 4 HOH A 36 336 219 HOH HOH . F 4 HOH A 37 337 220 HOH HOH . F 4 HOH A 38 338 221 HOH HOH . F 4 HOH A 39 339 222 HOH HOH . F 4 HOH A 40 340 223 HOH HOH . F 4 HOH A 41 341 224 HOH HOH . F 4 HOH A 42 342 225 HOH HOH . F 4 HOH A 43 343 226 HOH HOH . F 4 HOH A 44 344 227 HOH HOH . F 4 HOH A 45 345 228 HOH HOH . F 4 HOH A 46 346 229 HOH HOH . F 4 HOH A 47 347 230 HOH HOH . F 4 HOH A 48 348 231 HOH HOH . F 4 HOH A 49 349 232 HOH HOH . F 4 HOH A 50 350 233 HOH HOH . F 4 HOH A 51 351 234 HOH HOH . F 4 HOH A 52 352 235 HOH HOH . F 4 HOH A 53 353 236 HOH HOH . F 4 HOH A 54 354 237 HOH HOH . F 4 HOH A 55 355 238 HOH HOH . F 4 HOH A 56 356 239 HOH HOH . F 4 HOH A 57 357 240 HOH HOH . F 4 HOH A 58 358 241 HOH HOH . F 4 HOH A 59 359 242 HOH HOH . F 4 HOH A 60 360 243 HOH HOH . F 4 HOH A 61 361 244 HOH HOH . F 4 HOH A 62 362 245 HOH HOH . F 4 HOH A 63 363 246 HOH HOH . F 4 HOH A 64 364 247 HOH HOH . F 4 HOH A 65 365 248 HOH HOH . F 4 HOH A 66 366 249 HOH HOH . F 4 HOH A 67 367 250 HOH HOH . F 4 HOH A 68 368 251 HOH HOH . F 4 HOH A 69 369 252 HOH HOH . F 4 HOH A 70 370 253 HOH HOH . F 4 HOH A 71 371 254 HOH HOH . F 4 HOH A 72 372 255 HOH HOH . F 4 HOH A 73 373 256 HOH HOH . F 4 HOH A 74 374 257 HOH HOH . F 4 HOH A 75 375 258 HOH HOH . F 4 HOH A 76 376 259 HOH HOH . F 4 HOH A 77 377 260 HOH HOH . F 4 HOH A 78 378 261 HOH HOH . F 4 HOH A 79 379 262 HOH HOH . F 4 HOH A 80 380 263 HOH HOH . F 4 HOH A 81 381 264 HOH HOH . F 4 HOH A 82 382 265 HOH HOH . F 4 HOH A 83 383 266 HOH HOH . F 4 HOH A 84 384 267 HOH HOH . F 4 HOH A 85 385 268 HOH HOH . F 4 HOH A 86 386 269 HOH HOH . F 4 HOH A 87 387 270 HOH HOH . F 4 HOH A 88 388 271 HOH HOH . F 4 HOH A 89 389 272 HOH HOH . F 4 HOH A 90 390 273 HOH HOH . F 4 HOH A 91 391 274 HOH HOH . F 4 HOH A 92 392 275 HOH HOH . F 4 HOH A 93 393 276 HOH HOH . F 4 HOH A 94 394 277 HOH HOH . F 4 HOH A 95 395 278 HOH HOH . F 4 HOH A 96 396 279 HOH HOH . F 4 HOH A 97 397 280 HOH HOH . F 4 HOH A 98 398 281 HOH HOH . F 4 HOH A 99 399 282 HOH HOH . F 4 HOH A 100 400 283 HOH HOH . F 4 HOH A 101 401 284 HOH HOH . F 4 HOH A 102 402 285 HOH HOH . F 4 HOH A 103 403 286 HOH HOH . F 4 HOH A 104 404 287 HOH HOH . F 4 HOH A 105 405 288 HOH HOH . F 4 HOH A 106 406 289 HOH HOH . F 4 HOH A 107 407 290 HOH HOH . F 4 HOH A 108 408 291 HOH HOH . F 4 HOH A 109 409 292 HOH HOH . F 4 HOH A 110 410 293 HOH HOH . F 4 HOH A 111 411 294 HOH HOH . F 4 HOH A 112 412 295 HOH HOH . F 4 HOH A 113 413 296 HOH HOH . F 4 HOH A 114 414 297 HOH HOH . F 4 HOH A 115 415 298 HOH HOH . F 4 HOH A 116 416 299 HOH HOH . F 4 HOH A 117 417 300 HOH HOH . F 4 HOH A 118 418 301 HOH HOH . F 4 HOH A 119 419 302 HOH HOH . F 4 HOH A 120 420 303 HOH HOH . F 4 HOH A 121 421 304 HOH HOH . F 4 HOH A 122 422 305 HOH HOH . F 4 HOH A 123 423 306 HOH HOH . F 4 HOH A 124 424 307 HOH HOH . F 4 HOH A 125 425 308 HOH HOH . F 4 HOH A 126 426 309 HOH HOH . F 4 HOH A 127 427 310 HOH HOH . F 4 HOH A 128 428 311 HOH HOH . F 4 HOH A 129 429 312 HOH HOH . F 4 HOH A 130 430 313 HOH HOH . F 4 HOH A 131 431 314 HOH HOH . F 4 HOH A 132 432 315 HOH HOH . F 4 HOH A 133 433 316 HOH HOH . F 4 HOH A 134 434 317 HOH HOH . F 4 HOH A 135 435 318 HOH HOH . F 4 HOH A 136 436 319 HOH HOH . F 4 HOH A 137 437 320 HOH HOH . F 4 HOH A 138 438 321 HOH HOH . F 4 HOH A 139 439 322 HOH HOH . F 4 HOH A 140 440 323 HOH HOH . F 4 HOH A 141 441 324 HOH HOH . F 4 HOH A 142 442 325 HOH HOH . F 4 HOH A 143 443 326 HOH HOH . F 4 HOH A 144 444 327 HOH HOH . F 4 HOH A 145 445 328 HOH HOH . F 4 HOH A 146 446 329 HOH HOH . F 4 HOH A 147 447 330 HOH HOH . F 4 HOH A 148 448 331 HOH HOH . F 4 HOH A 149 449 332 HOH HOH . G 4 HOH B 1 301 2 HOH HOH . G 4 HOH B 2 302 4 HOH HOH . G 4 HOH B 3 303 5 HOH HOH . G 4 HOH B 4 304 6 HOH HOH . G 4 HOH B 5 305 11 HOH HOH . G 4 HOH B 6 306 12 HOH HOH . G 4 HOH B 7 307 13 HOH HOH . G 4 HOH B 8 308 15 HOH HOH . G 4 HOH B 9 309 20 HOH HOH . G 4 HOH B 10 310 23 HOH HOH . G 4 HOH B 11 311 24 HOH HOH . G 4 HOH B 12 312 197 HOH HOH . G 4 HOH B 13 313 198 HOH HOH . G 4 HOH B 14 314 199 HOH HOH . G 4 HOH B 15 315 200 HOH HOH . G 4 HOH B 16 316 201 HOH HOH . G 4 HOH B 17 317 202 HOH HOH . G 4 HOH B 18 318 203 HOH HOH . G 4 HOH B 19 319 204 HOH HOH . G 4 HOH B 20 320 205 HOH HOH . G 4 HOH B 21 321 206 HOH HOH . G 4 HOH B 22 322 207 HOH HOH . G 4 HOH B 23 323 208 HOH HOH . G 4 HOH B 24 324 209 HOH HOH . G 4 HOH B 25 325 210 HOH HOH . G 4 HOH B 26 326 211 HOH HOH . G 4 HOH B 27 327 212 HOH HOH . G 4 HOH B 28 328 213 HOH HOH . G 4 HOH B 29 329 214 HOH HOH . G 4 HOH B 30 330 215 HOH HOH . G 4 HOH B 31 331 216 HOH HOH . G 4 HOH B 32 332 217 HOH HOH . G 4 HOH B 33 333 218 HOH HOH . G 4 HOH B 34 334 219 HOH HOH . G 4 HOH B 35 335 220 HOH HOH . G 4 HOH B 36 336 221 HOH HOH . G 4 HOH B 37 337 222 HOH HOH . G 4 HOH B 38 338 223 HOH HOH . G 4 HOH B 39 339 224 HOH HOH . G 4 HOH B 40 340 225 HOH HOH . G 4 HOH B 41 341 226 HOH HOH . G 4 HOH B 42 342 227 HOH HOH . G 4 HOH B 43 343 228 HOH HOH . G 4 HOH B 44 344 229 HOH HOH . G 4 HOH B 45 345 230 HOH HOH . G 4 HOH B 46 346 231 HOH HOH . G 4 HOH B 47 347 232 HOH HOH . G 4 HOH B 48 348 233 HOH HOH . G 4 HOH B 49 349 234 HOH HOH . G 4 HOH B 50 350 235 HOH HOH . G 4 HOH B 51 351 236 HOH HOH . G 4 HOH B 52 352 237 HOH HOH . G 4 HOH B 53 353 238 HOH HOH . G 4 HOH B 54 354 239 HOH HOH . G 4 HOH B 55 355 240 HOH HOH . G 4 HOH B 56 356 241 HOH HOH . G 4 HOH B 57 357 242 HOH HOH . G 4 HOH B 58 358 243 HOH HOH . G 4 HOH B 59 359 244 HOH HOH . G 4 HOH B 60 360 245 HOH HOH . G 4 HOH B 61 361 246 HOH HOH . G 4 HOH B 62 362 247 HOH HOH . G 4 HOH B 63 363 248 HOH HOH . G 4 HOH B 64 364 249 HOH HOH . G 4 HOH B 65 365 250 HOH HOH . G 4 HOH B 66 366 251 HOH HOH . G 4 HOH B 67 367 252 HOH HOH . G 4 HOH B 68 368 253 HOH HOH . G 4 HOH B 69 369 254 HOH HOH . G 4 HOH B 70 370 255 HOH HOH . G 4 HOH B 71 371 256 HOH HOH . G 4 HOH B 72 372 257 HOH HOH . G 4 HOH B 73 373 258 HOH HOH . G 4 HOH B 74 374 259 HOH HOH . G 4 HOH B 75 375 260 HOH HOH . G 4 HOH B 76 376 261 HOH HOH . G 4 HOH B 77 377 262 HOH HOH . G 4 HOH B 78 378 263 HOH HOH . G 4 HOH B 79 379 264 HOH HOH . G 4 HOH B 80 380 265 HOH HOH . G 4 HOH B 81 381 266 HOH HOH . G 4 HOH B 82 382 267 HOH HOH . G 4 HOH B 83 383 268 HOH HOH . G 4 HOH B 84 384 269 HOH HOH . G 4 HOH B 85 385 270 HOH HOH . G 4 HOH B 86 386 271 HOH HOH . G 4 HOH B 87 387 272 HOH HOH . G 4 HOH B 88 388 273 HOH HOH . G 4 HOH B 89 389 274 HOH HOH . G 4 HOH B 90 390 275 HOH HOH . G 4 HOH B 91 391 276 HOH HOH . G 4 HOH B 92 392 277 HOH HOH . G 4 HOH B 93 393 278 HOH HOH . G 4 HOH B 94 394 279 HOH HOH . G 4 HOH B 95 395 280 HOH HOH . G 4 HOH B 96 396 281 HOH HOH . G 4 HOH B 97 397 282 HOH HOH . G 4 HOH B 98 398 283 HOH HOH . G 4 HOH B 99 399 284 HOH HOH . G 4 HOH B 100 400 285 HOH HOH . G 4 HOH B 101 401 286 HOH HOH . G 4 HOH B 102 402 287 HOH HOH . G 4 HOH B 103 403 288 HOH HOH . G 4 HOH B 104 404 289 HOH HOH . G 4 HOH B 105 405 290 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 28.027 _atom_site.Cartn_y 34.446 _atom_site.Cartn_z -0.034 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 28.41 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 202 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 1 #