data_4DQF # _model_server_result.job_id haqmwLN4wkUidKXlw3Gf-A _model_server_result.datetime_utc '2024-11-04 22:43:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4dqf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":105}' # _entry.id 4DQF # _exptl.entry_id 4DQF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4DQF _cell.length_a 51.978 _cell.length_b 57.379 _cell.length_c 60.678 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4DQF _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 203 n n C1 C2 GOL sing 204 n n C1 H11 GOL sing 205 n n C1 H12 GOL sing 206 n n O1 HO1 GOL sing 207 n n C2 O2 GOL sing 208 n n C2 C3 GOL sing 209 n n C2 H2 GOL sing 210 n n O2 HO2 GOL sing 211 n n C3 O3 GOL sing 212 n n C3 H31 GOL sing 213 n n C3 H32 GOL sing 214 n n O3 HO3 GOL sing 215 n n # _atom_sites.entry_id 4DQF _atom_sites.fract_transf_matrix[1][1] 0.019239 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017428 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01648 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 017 B 1 101 200 017 017 . D 3 SO4 B 1 102 1 SO4 SO4 . E 3 SO4 B 1 103 2 SO4 SO4 . F 4 EDO B 1 104 3 EDO EDO . G 5 GOL B 1 105 4 GOL GOL . H 6 HOH A 1 101 1 HOH HOH . H 6 HOH A 2 102 5 HOH HOH . H 6 HOH A 3 103 6 HOH HOH . H 6 HOH A 4 104 9 HOH HOH . H 6 HOH A 5 105 10 HOH HOH . H 6 HOH A 6 106 11 HOH HOH . H 6 HOH A 7 107 12 HOH HOH . H 6 HOH A 8 108 14 HOH HOH . H 6 HOH A 9 109 15 HOH HOH . H 6 HOH A 10 110 16 HOH HOH . H 6 HOH A 11 111 17 HOH HOH . H 6 HOH A 12 112 18 HOH HOH . H 6 HOH A 13 113 28 HOH HOH . H 6 HOH A 14 114 29 HOH HOH . H 6 HOH A 15 115 30 HOH HOH . H 6 HOH A 16 116 31 HOH HOH . H 6 HOH A 17 117 36 HOH HOH . H 6 HOH A 18 118 38 HOH HOH . H 6 HOH A 19 119 39 HOH HOH . H 6 HOH A 20 120 40 HOH HOH . H 6 HOH A 21 121 41 HOH HOH . H 6 HOH A 22 122 42 HOH HOH . H 6 HOH A 23 123 43 HOH HOH . H 6 HOH A 24 124 45 HOH HOH . H 6 HOH A 25 125 52 HOH HOH . H 6 HOH A 26 126 53 HOH HOH . H 6 HOH A 27 127 54 HOH HOH . H 6 HOH A 28 128 55 HOH HOH . H 6 HOH A 29 129 56 HOH HOH . H 6 HOH A 30 130 57 HOH HOH . H 6 HOH A 31 131 58 HOH HOH . H 6 HOH A 32 132 59 HOH HOH . H 6 HOH A 33 133 61 HOH HOH . I 6 HOH B 1 201 2 HOH HOH . I 6 HOH B 2 202 3 HOH HOH . I 6 HOH B 3 203 4 HOH HOH . I 6 HOH B 4 204 7 HOH HOH . I 6 HOH B 5 205 8 HOH HOH . I 6 HOH B 6 206 13 HOH HOH . I 6 HOH B 7 207 19 HOH HOH . I 6 HOH B 8 208 20 HOH HOH . I 6 HOH B 9 209 21 HOH HOH . I 6 HOH B 10 210 22 HOH HOH . I 6 HOH B 11 211 23 HOH HOH . I 6 HOH B 12 212 24 HOH HOH . I 6 HOH B 13 213 25 HOH HOH . I 6 HOH B 14 214 26 HOH HOH . I 6 HOH B 15 215 27 HOH HOH . I 6 HOH B 16 216 32 HOH HOH . I 6 HOH B 17 217 33 HOH HOH . I 6 HOH B 18 218 34 HOH HOH . I 6 HOH B 19 219 35 HOH HOH . I 6 HOH B 20 220 37 HOH HOH . I 6 HOH B 21 221 44 HOH HOH . I 6 HOH B 22 222 46 HOH HOH . I 6 HOH B 23 223 47 HOH HOH . I 6 HOH B 24 224 48 HOH HOH . I 6 HOH B 25 225 49 HOH HOH . I 6 HOH B 26 226 50 HOH HOH . I 6 HOH B 27 227 51 HOH HOH . I 6 HOH B 28 228 60 HOH HOH . I 6 HOH B 29 229 62 HOH HOH . I 6 HOH B 30 230 63 HOH HOH . I 6 HOH B 31 231 64 HOH HOH . I 6 HOH B 32 232 65 HOH HOH . I 6 HOH B 33 233 66 HOH HOH . I 6 HOH B 34 234 67 HOH HOH . I 6 HOH B 35 235 68 HOH HOH . I 6 HOH B 36 236 69 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 5 8.871 -8.446 -21.663 1 44.21 ? C1 GOL 105 B 1 HETATM 2 O O1 GOL . . . G 5 8.915 -9.637 -22.458 1 49.21 ? O1 GOL 105 B 1 HETATM 3 C C2 GOL . . . G 5 9.704 -8.554 -20.39 1 46.56 ? C2 GOL 105 B 1 HETATM 4 O O2 GOL . . . G 5 10.625 -9.648 -20.502 1 51.82 ? O2 GOL 105 B 1 HETATM 5 C C3 GOL . . . G 5 8.835 -8.701 -19.135 1 45.66 ? C3 GOL 105 B 1 HETATM 6 O O3 GOL . . . G 5 9.392 -8.021 -17.997 1 44.02 ? O3 GOL 105 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #