data_4DQM
#
_model_server_result.job_id            OadgjlEvZZoXO3Em_voUUw 
_model_server_result.datetime_utc      '2025-07-08 04:30:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4dqm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":501}' 
#
_entry.id    4DQM 
#
_exptl.entry_id    4DQM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              386.567 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (5S)-4-[(3E,7E)-4,8-dimethyl-10-(2,6,6-trimethylcyclohex-1-en-1-yl)deca-3,7-dien-1-yl]-5-hydroxyfuran-2(5H)-one 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4DQM 
_cell.length_a            54.12 
_cell.length_b            104.46 
_cell.length_c            113.48 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4DQM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 2 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,G 1 1 
C,D,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
#
_chem_comp.formula           'C25 H38 O3' 
_chem_comp.formula_weight    386.567 
_chem_comp.id                LUF 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (5S)-4-[(3E,7E)-4,8-dimethyl-10-(2,6,6-trimethylcyclohex-1-en-1-yl)deca-3,7-dien-1-yl]-5-hydroxyfuran-2(5H)-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     Luffariellolide 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O3 C25 LUF doub 194 n n 
C25 O1 LUF sing 195 n n 
C25 C24 LUF sing 196 n n 
O1 C23 LUF sing 197 n n 
C24 C22 LUF doub 198 n n 
C23 C22 LUF sing 199 n n 
C23 O2 LUF sing 200 n n 
C22 C20 LUF sing 201 n n 
C20 C18 LUF sing 202 n n 
C18 C19 LUF sing 203 n n 
C21 C17 LUF sing 204 n n 
C19 C17 LUF doub 205 e n 
C17 C16 LUF sing 206 n n 
C16 C15 LUF sing 207 n n 
C15 C13 LUF sing 208 n n 
C13 C12 LUF doub 209 e n 
C14 C12 LUF sing 210 n n 
C12 C10 LUF sing 211 n n 
C10 C7 LUF sing 212 n n 
C8 C1 LUF sing 213 n n 
C7 C3 LUF sing 214 n n 
C1 C9 LUF sing 215 n n 
C1 C3 LUF sing 216 n n 
C1 C2 LUF sing 217 n n 
C3 C6 LUF doub 218 n n 
C2 C4 LUF sing 219 n n 
C4 C5 LUF sing 220 n n 
C6 C5 LUF sing 221 n n 
C6 C11 LUF sing 222 n n 
C4 H1 LUF sing 223 n n 
C4 H2 LUF sing 224 n n 
C5 H3 LUF sing 225 n n 
C5 H4 LUF sing 226 n n 
C7 H6 LUF sing 227 n n 
C7 H7 LUF sing 228 n n 
C8 H8 LUF sing 229 n n 
C8 H9 LUF sing 230 n n 
C8 H10 LUF sing 231 n n 
C10 H11 LUF sing 232 n n 
C10 H12 LUF sing 233 n n 
C13 H13 LUF sing 234 n n 
C15 H14 LUF sing 235 n n 
C15 H15 LUF sing 236 n n 
C20 H16 LUF sing 237 n n 
C20 H17 LUF sing 238 n n 
C21 H18 LUF sing 239 n n 
C21 H19 LUF sing 240 n n 
C21 H20 LUF sing 241 n n 
C24 H22 LUF sing 242 n n 
C23 H24 LUF sing 243 n n 
O2 H25 LUF sing 244 n n 
C18 H26 LUF sing 245 n n 
C18 H27 LUF sing 246 n n 
C19 H28 LUF sing 247 n n 
C16 H29 LUF sing 248 n n 
C16 H30 LUF sing 249 n n 
C14 H31 LUF sing 250 n n 
C14 H32 LUF sing 251 n n 
C14 H33 LUF sing 252 n n 
C9 H35 LUF sing 253 n n 
C9 H36 LUF sing 254 n n 
C9 H37 LUF sing 255 n n 
C11 H38 LUF sing 256 n n 
C11 H39 LUF sing 257 n n 
C11 H40 LUF sing 258 n n 
C2 H41 LUF sing 259 n n 
C2 H42 LUF sing 260 n n 
#
_atom_sites.entry_id                     4DQM 
_atom_sites.fract_transf_matrix[1][1]    0.018477 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009573 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008812 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 LUF A 1 501 1 LUF LIG . 
F 3 LUF C 1 501 1 LUF LIG . 
G 4 HOH A 1 601 8 HOH HOH . 
G 4 HOH A 2 602 9 HOH HOH . 
G 4 HOH A 3 603 10 HOH HOH . 
G 4 HOH A 4 604 11 HOH HOH . 
G 4 HOH A 5 605 19 HOH HOH . 
G 4 HOH A 6 606 20 HOH HOH . 
G 4 HOH A 7 607 22 HOH HOH . 
G 4 HOH A 8 608 24 HOH HOH . 
G 4 HOH A 9 609 25 HOH HOH . 
G 4 HOH A 10 610 26 HOH HOH . 
G 4 HOH A 11 611 28 HOH HOH . 
G 4 HOH A 12 612 30 HOH HOH . 
H 4 HOH C 1 601 1 HOH HOH . 
H 4 HOH C 2 602 2 HOH HOH . 
H 4 HOH C 3 603 3 HOH HOH . 
H 4 HOH C 4 604 4 HOH HOH . 
H 4 HOH C 5 605 5 HOH HOH . 
H 4 HOH C 6 606 6 HOH HOH . 
H 4 HOH C 7 607 7 HOH HOH . 
H 4 HOH C 8 608 12 HOH HOH . 
H 4 HOH C 9 609 13 HOH HOH . 
H 4 HOH C 10 610 14 HOH HOH . 
H 4 HOH C 11 611 15 HOH HOH . 
H 4 HOH C 12 612 16 HOH HOH . 
H 4 HOH C 13 613 17 HOH HOH . 
H 4 HOH C 14 614 18 HOH HOH . 
H 4 HOH C 15 615 21 HOH HOH . 
H 4 HOH C 16 616 23 HOH HOH . 
H 4 HOH C 17 617 27 HOH HOH . 
H 4 HOH C 18 618 29 HOH HOH . 
H 4 HOH C 19 619 31 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 LUF . . . F 3 -8.316 -29.034 43.954 1 55.18 ? C4 LUF 501 C 1 
HETATM 2 C C5 LUF . . . F 3 -8.873 -29.124 42.498 1 53.16 ? C5 LUF 501 C 1 
HETATM 3 C C6 LUF . . . F 3 -10.228 -28.453 42.538 1 49.85 ? C6 LUF 501 C 1 
HETATM 4 C C7 LUF . . . F 3 -12.161 -28.795 44.194 1 60.18 ? C7 LUF 501 C 1 
HETATM 5 C C8 LUF . . . F 3 -10.206 -28.052 46.129 1 55.85 ? C8 LUF 501 C 1 
HETATM 6 C C10 LUF . . . F 3 -13.052 -27.604 44.668 1 57.02 ? C10 LUF 501 C 1 
HETATM 7 C C13 LUF . . . F 3 -15.456 -27.145 45.09 1 46.77 ? C13 LUF 501 C 1 
HETATM 8 C C15 LUF . . . F 3 -16.82 -27.549 45.564 1 41.6 ? C15 LUF 501 C 1 
HETATM 9 C C17 LUF . . . F 3 -18.221 -27.935 47.629 1 44.67 ? C17 LUF 501 C 1 
HETATM 10 C C21 LUF . . . F 3 -18.209 -28.901 48.729 1 41.4 ? C21 LUF 501 C 1 
HETATM 11 C C22 LUF . . . F 3 -20.65 -28.926 49.322 1 46.43 ? C22 LUF 501 C 1 
HETATM 12 C C24 LUF . . . F 3 -20.887 -27.868 50.107 1 44.4 ? C24 LUF 501 C 1 
HETATM 13 O O3 LUF . . . F 3 -20.78 -27.706 52.518 1 60.33 ? O3 LUF 501 C 1 
HETATM 14 C C25 LUF . . . F 3 -20.695 -28.379 51.48 1 51.93 ? C25 LUF 501 C 1 
HETATM 15 O O1 LUF . . . F 3 -20.443 -29.806 51.571 1 47.62 ? O1 LUF 501 C 1 
HETATM 16 C C23 LUF . . . F 3 -20.42 -30.201 50.175 1 46.99 ? C23 LUF 501 C 1 
HETATM 17 O O2 LUF . . . F 3 -19.092 -30.808 50.005 1 45.33 ? O2 LUF 501 C 1 
HETATM 18 C C19 LUF . . . F 3 -19.47 -27.49 47.286 1 44.25 ? C19 LUF 501 C 1 
HETATM 19 C C16 LUF . . . F 3 -16.824 -27.586 47.076 1 38.95 ? C16 LUF 501 C 1 
HETATM 20 C C12 LUF . . . F 3 -14.435 -28.031 45.132 1 52.09 ? C12 LUF 501 C 1 
HETATM 21 C C14 LUF . . . F 3 -14.578 -29.431 45.629 1 47.95 ? C14 LUF 501 C 1 
HETATM 22 C C3 LUF . . . F 3 -10.771 -28.234 43.753 1 53.35 ? C3 LUF 501 C 1 
HETATM 23 C C1 LUF . . . F 3 -9.958 -27.44 44.751 1 52.28 ? C1 LUF 501 C 1 
HETATM 24 C C9 LUF . . . F 3 -10.327 -25.936 44.641 1 60.38 ? C9 LUF 501 C 1 
HETATM 25 C C11 LUF . . . F 3 -10.934 -28.128 41.258 1 50.08 ? C11 LUF 501 C 1 
HETATM 26 C C2 LUF . . . F 3 -8.486 -27.596 44.453 1 50.12 ? C2 LUF 501 C 1 
#
_model_server_stats.io_time_ms              116 
_model_server_stats.parse_time_ms           103 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           219 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           26 
#