data_4DQU # _model_server_result.job_id NztU3CC4QDklS0c2hM1ypg _model_server_result.datetime_utc '2024-10-30 03:20:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4dqu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":500}' # _entry.id 4DQU # _exptl.entry_id 4DQU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 665.441 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4DQU _cell.length_a 98.445 _cell.length_b 98.445 _cell.length_c 139.215 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4DQU _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 49.2225 85.255871 0 3 'crystal symmetry operation' 7_554 y,x,-z-1/3 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 -46.405 4 'crystal symmetry operation' 10_664 -y+1,-x+1,-z-1/3 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 49.2225 85.255871 -46.405 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H29 N7 O14 P2' _chem_comp.formula_weight 665.441 _chem_comp.id NAI _chem_comp.mon_nstd_flag . _chem_comp.name '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms NADH # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAI doub 237 n n PA O2A NAI sing 238 n n PA O5B NAI sing 239 n n PA O3 NAI sing 240 n n O2A HOA2 NAI sing 241 n n O5B C5B NAI sing 242 n n C5B C4B NAI sing 243 n n C5B H51A NAI sing 244 n n C5B H52A NAI sing 245 n n C4B O4B NAI sing 246 n n C4B C3B NAI sing 247 n n C4B H4B NAI sing 248 n n O4B C1B NAI sing 249 n n C3B O3B NAI sing 250 n n C3B C2B NAI sing 251 n n C3B H3B NAI sing 252 n n O3B HO3A NAI sing 253 n n C2B O2B NAI sing 254 n n C2B C1B NAI sing 255 n n C2B H2B NAI sing 256 n n O2B HO2A NAI sing 257 n n C1B N9A NAI sing 258 n n C1B H1B NAI sing 259 n n N9A C8A NAI sing 260 n y N9A C4A NAI sing 261 n y C8A N7A NAI doub 262 n y C8A H8A NAI sing 263 n n N7A C5A NAI sing 264 n y C5A C6A NAI sing 265 n y C5A C4A NAI doub 266 n y C6A N6A NAI sing 267 n n C6A N1A NAI doub 268 n y N6A H61A NAI sing 269 n n N6A H62A NAI sing 270 n n N1A C2A NAI sing 271 n y C2A N3A NAI doub 272 n y C2A H2A NAI sing 273 n n N3A C4A NAI sing 274 n y O3 PN NAI sing 275 n n PN O1N NAI sing 276 n n PN O2N NAI doub 277 n n PN O5D NAI sing 278 n n O1N HO1N NAI sing 279 n n O5D C5D NAI sing 280 n n C5D C4D NAI sing 281 n n C5D H51N NAI sing 282 n n C5D H52N NAI sing 283 n n C4D O4D NAI sing 284 n n C4D C3D NAI sing 285 n n C4D H4D NAI sing 286 n n O4D C1D NAI sing 287 n n C3D O3D NAI sing 288 n n C3D C2D NAI sing 289 n n C3D H3D NAI sing 290 n n O3D HO3N NAI sing 291 n n C2D O2D NAI sing 292 n n C2D C1D NAI sing 293 n n C2D H2D NAI sing 294 n n O2D HO2N NAI sing 295 n n C1D N1N NAI sing 296 n n C1D H1D NAI sing 297 n n N1N C2N NAI sing 298 n n N1N C6N NAI sing 299 n n C2N C3N NAI doub 300 n n C2N H2N NAI sing 301 n n C3N C7N NAI sing 302 n n C3N C4N NAI sing 303 n n C7N O7N NAI doub 304 n n C7N N7N NAI sing 305 n n N7N H71N NAI sing 306 n n N7N H72N NAI sing 307 n n C4N C5N NAI sing 308 n n C4N H4N NAI sing 309 n n C4N H42N NAI sing 310 n n C5N C6N NAI doub 311 n n C5N H5N NAI sing 312 n n C6N H6N NAI sing 313 n n # _atom_sites.entry_id 4DQU _atom_sites.fract_transf_matrix[1][1] 0.010158 _atom_sites.fract_transf_matrix[1][2] 0.005865 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011729 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007183 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAI A 1 500 500 NAI NAD . C 3 HOH A 1 601 7 HOH HOH . C 3 HOH A 2 602 8 HOH HOH . C 3 HOH A 3 603 17 HOH HOH . C 3 HOH A 4 604 18 HOH HOH . C 3 HOH A 5 605 19 HOH HOH . C 3 HOH A 6 606 20 HOH HOH . C 3 HOH A 7 607 33 HOH HOH . C 3 HOH A 8 608 36 HOH HOH . C 3 HOH A 9 609 39 HOH HOH . C 3 HOH A 10 610 58 HOH HOH . C 3 HOH A 11 611 59 HOH HOH . C 3 HOH A 12 612 66 HOH HOH . C 3 HOH A 13 613 69 HOH HOH . C 3 HOH A 14 614 70 HOH HOH . C 3 HOH A 15 615 73 HOH HOH . C 3 HOH A 16 616 80 HOH HOH . C 3 HOH A 17 617 85 HOH HOH . C 3 HOH A 18 618 91 HOH HOH . C 3 HOH A 19 619 103 HOH HOH . C 3 HOH A 20 620 104 HOH HOH . C 3 HOH A 21 621 114 HOH HOH . C 3 HOH A 22 622 126 HOH HOH . C 3 HOH A 23 623 127 HOH HOH . C 3 HOH A 24 624 128 HOH HOH . C 3 HOH A 25 625 129 HOH HOH . C 3 HOH A 26 626 130 HOH HOH . C 3 HOH A 27 627 131 HOH HOH . C 3 HOH A 28 628 132 HOH HOH . C 3 HOH A 29 629 133 HOH HOH . C 3 HOH A 30 630 135 HOH HOH . C 3 HOH A 31 631 136 HOH HOH . C 3 HOH A 32 632 138 HOH HOH . C 3 HOH A 33 633 141 HOH HOH . C 3 HOH A 34 634 142 HOH HOH . C 3 HOH A 35 635 143 HOH HOH . C 3 HOH A 36 636 144 HOH HOH . C 3 HOH A 37 637 146 HOH HOH . C 3 HOH A 38 638 147 HOH HOH . C 3 HOH A 39 639 148 HOH HOH . C 3 HOH A 40 640 149 HOH HOH . C 3 HOH A 41 641 150 HOH HOH . C 3 HOH A 42 642 151 HOH HOH . C 3 HOH A 43 643 152 HOH HOH . C 3 HOH A 44 644 154 HOH HOH . C 3 HOH A 45 645 155 HOH HOH . C 3 HOH A 46 646 156 HOH HOH . C 3 HOH A 47 647 157 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAI . . . B 2 0.735 33.799 -11.048 1 32.86 ? PA NAI 500 A 1 HETATM 2 O O1A NAI . . . B 2 0.909 32.437 -10.472 1 28.2 ? O1A NAI 500 A 1 HETATM 3 O O2A NAI . . . B 2 -0.336 34.744 -10.605 1 29.7 ? O2A NAI 500 A 1 HETATM 4 O O5B NAI . . . B 2 0.557 33.617 -12.721 1 37 ? O5B NAI 500 A 1 HETATM 5 C C5B NAI . . . B 2 0.912 32.363 -13.304 1 29.35 ? C5B NAI 500 A 1 HETATM 6 C C4B NAI . . . B 2 -0.105 32.083 -14.402 1 31.82 ? C4B NAI 500 A 1 HETATM 7 O O4B NAI . . . B 2 0.4 30.942 -15.21 1 33.88 ? O4B NAI 500 A 1 HETATM 8 C C3B NAI . . . B 2 -1.298 31.538 -13.617 1 27.97 ? C3B NAI 500 A 1 HETATM 9 O O3B NAI . . . B 2 -2.462 32.243 -13.983 1 24.84 ? O3B NAI 500 A 1 HETATM 10 C C2B NAI . . . B 2 -1.346 30.107 -14.075 1 29.12 ? C2B NAI 500 A 1 HETATM 11 O O2B NAI . . . B 2 -2.694 29.679 -14.206 1 39.59 ? O2B NAI 500 A 1 HETATM 12 C C1B NAI . . . B 2 -0.72 30.192 -15.454 1 29.16 ? C1B NAI 500 A 1 HETATM 13 N N9A NAI . . . B 2 -0.398 28.829 -15.918 1 29.05 ? N9A NAI 500 A 1 HETATM 14 C C8A NAI . . . B 2 0.365 27.88 -15.361 1 28.56 ? C8A NAI 500 A 1 HETATM 15 N N7A NAI . . . B 2 0.337 26.782 -16.145 1 30.06 ? N7A NAI 500 A 1 HETATM 16 C C5A NAI . . . B 2 -0.452 27.044 -17.209 1 30.47 ? C5A NAI 500 A 1 HETATM 17 C C6A NAI . . . B 2 -0.882 26.36 -18.355 1 32.54 ? C6A NAI 500 A 1 HETATM 18 N N6A NAI . . . B 2 -0.535 25.094 -18.659 1 31.68 ? N6A NAI 500 A 1 HETATM 19 N N1A NAI . . . B 2 -1.685 27.013 -19.213 1 31.16 ? N1A NAI 500 A 1 HETATM 20 C C2A NAI . . . B 2 -2.074 28.252 -19.015 1 31.12 ? C2A NAI 500 A 1 HETATM 21 N N3A NAI . . . B 2 -1.689 28.907 -17.953 1 29.92 ? N3A NAI 500 A 1 HETATM 22 C C4A NAI . . . B 2 -0.897 28.343 -17.052 1 28.98 ? C4A NAI 500 A 1 HETATM 23 O O3 NAI . . . B 2 2.198 34.473 -10.908 1 31.1 ? O3 NAI 500 A 1 HETATM 24 P PN NAI . . . B 2 2.673 35.795 -11.637 1 30.19 ? PN NAI 500 A 1 HETATM 25 O O1N NAI . . . B 2 3.869 36.311 -11.012 1 36.63 ? O1N NAI 500 A 1 HETATM 26 O O2N NAI . . . B 2 1.533 36.737 -11.877 1 32.88 ? O2N NAI 500 A 1 HETATM 27 O O5D NAI . . . B 2 3.18 35.025 -13.034 1 33.51 ? O5D NAI 500 A 1 HETATM 28 C C5D NAI . . . B 2 2.888 35.683 -14.265 1 31.27 ? C5D NAI 500 A 1 HETATM 29 C C4D NAI . . . B 2 4.148 35.881 -15.109 1 32.42 ? C4D NAI 500 A 1 HETATM 30 O O4D NAI . . . B 2 4.982 36.986 -14.602 1 32.18 ? O4D NAI 500 A 1 HETATM 31 C C3D NAI . . . B 2 5.037 34.621 -15.131 1 29.12 ? C3D NAI 500 A 1 HETATM 32 O O3D NAI . . . B 2 5.619 34.61 -16.428 1 31.38 ? O3D NAI 500 A 1 HETATM 33 C C2D NAI . . . B 2 6.13 34.961 -14.127 1 25.93 ? C2D NAI 500 A 1 HETATM 34 O O2D NAI . . . B 2 7.308 34.16 -14.359 1 22.24 ? O2D NAI 500 A 1 HETATM 35 C C1D NAI . . . B 2 6.361 36.375 -14.589 1 28.84 ? C1D NAI 500 A 1 HETATM 36 N N1N NAI . . . B 2 7.172 37.155 -13.662 1 30.94 ? N1N NAI 500 A 1 HETATM 37 C C2N NAI . . . B 2 6.891 37.045 -12.272 1 29.43 ? C2N NAI 500 A 1 HETATM 38 C C3N NAI . . . B 2 7.642 37.757 -11.358 1 29.84 ? C3N NAI 500 A 1 HETATM 39 C C7N NAI . . . B 2 7.343 37.657 -9.84 1 28.12 ? C7N NAI 500 A 1 HETATM 40 O O7N NAI . . . B 2 8.273 38.089 -8.957 1 29.71 ? O7N NAI 500 A 1 HETATM 41 N N7N NAI . . . B 2 6.078 37.364 -9.488 1 23.07 ? N7N NAI 500 A 1 HETATM 42 C C4N NAI . . . B 2 8.638 38.613 -11.814 1 29.07 ? C4N NAI 500 A 1 HETATM 43 C C5N NAI . . . B 2 8.872 38.728 -13.186 1 33.23 ? C5N NAI 500 A 1 HETATM 44 C C6N NAI . . . B 2 8.143 38.011 -14.147 1 27.9 ? C6N NAI 500 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 37 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 44 #