data_4DRE # _model_server_result.job_id gqBlAnZzgvdPXHOOfk2OHg _model_server_result.datetime_utc '2024-11-26 14:26:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4dre # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":500}' # _entry.id 4DRE # _exptl.entry_id 4DRE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 665.441 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4DRE _cell.length_a 97.649 _cell.length_b 97.649 _cell.length_c 139.561 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4DRE _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 1,2,3,4 A,B,C 2 1,3 A,B,C 3 1,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_455 -x-1,-y,z -1 0 0 0 -1 0 0 0 1 -97.649 0 0 3 'crystal symmetry operation' 8_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 11_455 -x+y-1,y,-z -1 0 0 0 1 0 0 0 -1 -97.649 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H29 N7 O14 P2' _chem_comp.formula_weight 665.441 _chem_comp.id NAI _chem_comp.mon_nstd_flag . _chem_comp.name '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms NADH # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAI doub 237 n n PA O2A NAI sing 238 n n PA O5B NAI sing 239 n n PA O3 NAI sing 240 n n O2A HOA2 NAI sing 241 n n O5B C5B NAI sing 242 n n C5B C4B NAI sing 243 n n C5B H51A NAI sing 244 n n C5B H52A NAI sing 245 n n C4B O4B NAI sing 246 n n C4B C3B NAI sing 247 n n C4B H4B NAI sing 248 n n O4B C1B NAI sing 249 n n C3B O3B NAI sing 250 n n C3B C2B NAI sing 251 n n C3B H3B NAI sing 252 n n O3B HO3A NAI sing 253 n n C2B O2B NAI sing 254 n n C2B C1B NAI sing 255 n n C2B H2B NAI sing 256 n n O2B HO2A NAI sing 257 n n C1B N9A NAI sing 258 n n C1B H1B NAI sing 259 n n N9A C8A NAI sing 260 n y N9A C4A NAI sing 261 n y C8A N7A NAI doub 262 n y C8A H8A NAI sing 263 n n N7A C5A NAI sing 264 n y C5A C6A NAI sing 265 n y C5A C4A NAI doub 266 n y C6A N6A NAI sing 267 n n C6A N1A NAI doub 268 n y N6A H61A NAI sing 269 n n N6A H62A NAI sing 270 n n N1A C2A NAI sing 271 n y C2A N3A NAI doub 272 n y C2A H2A NAI sing 273 n n N3A C4A NAI sing 274 n y O3 PN NAI sing 275 n n PN O1N NAI sing 276 n n PN O2N NAI doub 277 n n PN O5D NAI sing 278 n n O1N HO1N NAI sing 279 n n O5D C5D NAI sing 280 n n C5D C4D NAI sing 281 n n C5D H51N NAI sing 282 n n C5D H52N NAI sing 283 n n C4D O4D NAI sing 284 n n C4D C3D NAI sing 285 n n C4D H4D NAI sing 286 n n O4D C1D NAI sing 287 n n C3D O3D NAI sing 288 n n C3D C2D NAI sing 289 n n C3D H3D NAI sing 290 n n O3D HO3N NAI sing 291 n n C2D O2D NAI sing 292 n n C2D C1D NAI sing 293 n n C2D H2D NAI sing 294 n n O2D HO2N NAI sing 295 n n C1D N1N NAI sing 296 n n C1D H1D NAI sing 297 n n N1N C2N NAI sing 298 n n N1N C6N NAI sing 299 n n C2N C3N NAI doub 300 n n C2N H2N NAI sing 301 n n C3N C7N NAI sing 302 n n C3N C4N NAI sing 303 n n C7N O7N NAI doub 304 n n C7N N7N NAI sing 305 n n N7N H71N NAI sing 306 n n N7N H72N NAI sing 307 n n C4N C5N NAI sing 308 n n C4N H4N NAI sing 309 n n C4N H42N NAI sing 310 n n C5N C6N NAI doub 311 n n C5N H5N NAI sing 312 n n C6N H6N NAI sing 313 n n # _atom_sites.entry_id 4DRE _atom_sites.fract_transf_matrix[1][1] 0.010241 _atom_sites.fract_transf_matrix[1][2] 0.005913 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011825 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007165 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAI A 1 500 500 NAI NAD . C 3 HOH A 1 601 7 HOH HOH . C 3 HOH A 2 602 18 HOH HOH . C 3 HOH A 3 603 19 HOH HOH . C 3 HOH A 4 604 33 HOH HOH . C 3 HOH A 5 605 39 HOH HOH . C 3 HOH A 6 606 59 HOH HOH . C 3 HOH A 7 607 80 HOH HOH . C 3 HOH A 8 608 85 HOH HOH . C 3 HOH A 9 609 91 HOH HOH . C 3 HOH A 10 610 103 HOH HOH . C 3 HOH A 11 611 104 HOH HOH . C 3 HOH A 12 612 126 HOH HOH . C 3 HOH A 13 613 127 HOH HOH . C 3 HOH A 14 614 130 HOH HOH . C 3 HOH A 15 615 133 HOH HOH . C 3 HOH A 16 616 135 HOH HOH . C 3 HOH A 17 617 136 HOH HOH . C 3 HOH A 18 618 142 HOH HOH . C 3 HOH A 19 619 150 HOH HOH . C 3 HOH A 20 620 161 HOH HOH . C 3 HOH A 21 621 165 HOH HOH . C 3 HOH A 22 622 166 HOH HOH . C 3 HOH A 23 623 167 HOH HOH . C 3 HOH A 24 624 168 HOH HOH . C 3 HOH A 25 625 172 HOH HOH . C 3 HOH A 26 626 173 HOH HOH . C 3 HOH A 27 627 174 HOH HOH . C 3 HOH A 28 628 175 HOH HOH . C 3 HOH A 29 629 176 HOH HOH . C 3 HOH A 30 630 178 HOH HOH . C 3 HOH A 31 631 179 HOH HOH . C 3 HOH A 32 632 180 HOH HOH . C 3 HOH A 33 633 182 HOH HOH . C 3 HOH A 34 634 183 HOH HOH . C 3 HOH A 35 635 184 HOH HOH . C 3 HOH A 36 636 188 HOH HOH . C 3 HOH A 37 637 190 HOH HOH . C 3 HOH A 38 638 191 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAI . . . B 2 -29.205 16.23 -12.146 1 30.36 ? PA NAI 500 A 1 HETATM 2 O O1A NAI . . . B 2 -28.117 15.422 -12.709 1 25.8 ? O1A NAI 500 A 1 HETATM 3 O O2A NAI . . . B 2 -29.508 17.638 -12.593 1 28.23 ? O2A NAI 500 A 1 HETATM 4 O O5B NAI . . . B 2 -28.976 16.267 -10.478 1 31.26 ? O5B NAI 500 A 1 HETATM 5 C C5B NAI . . . B 2 -28.18 15.302 -9.833 1 27.52 ? C5B NAI 500 A 1 HETATM 6 C C4B NAI . . . B 2 -27.298 16.075 -8.82 1 28.49 ? C4B NAI 500 A 1 HETATM 7 O O4B NAI . . . B 2 -26.575 15.102 -7.963 1 28.61 ? O4B NAI 500 A 1 HETATM 8 C C3B NAI . . . B 2 -26.197 16.842 -9.596 1 26.47 ? C3B NAI 500 A 1 HETATM 9 O O3B NAI . . . B 2 -26.25 18.22 -9.285 1 23.12 ? O3B NAI 500 A 1 HETATM 10 C C2B NAI . . . B 2 -24.939 16.208 -9.072 1 26.31 ? C2B NAI 500 A 1 HETATM 11 O O2B NAI . . . B 2 -23.868 17.168 -9.017 1 33.61 ? O2B NAI 500 A 1 HETATM 12 C C1B NAI . . . B 2 -25.381 15.755 -7.677 1 26.2 ? C1B NAI 500 A 1 HETATM 13 N N9A NAI . . . B 2 -24.379 14.816 -7.172 1 28.24 ? N9A NAI 500 A 1 HETATM 14 C C8A NAI . . . B 2 -23.95 13.662 -7.729 1 27.62 ? C8A NAI 500 A 1 HETATM 15 N N7A NAI . . . B 2 -22.998 13.145 -6.935 1 28.38 ? N7A NAI 500 A 1 HETATM 16 C C5A NAI . . . B 2 -22.814 13.964 -5.898 1 26.22 ? C5A NAI 500 A 1 HETATM 17 C C6A NAI . . . B 2 -21.976 13.962 -4.781 1 27.83 ? C6A NAI 500 A 1 HETATM 18 N N6A NAI . . . B 2 -21.068 13.005 -4.502 1 27.58 ? N6A NAI 500 A 1 HETATM 19 N N1A NAI . . . B 2 -22.112 14.976 -3.931 1 27.78 ? N1A NAI 500 A 1 HETATM 20 C C2A NAI . . . B 2 -22.979 15.971 -4.124 1 28.06 ? C2A NAI 500 A 1 HETATM 21 N N3A NAI . . . B 2 -23.786 15.996 -5.156 1 27.05 ? N3A NAI 500 A 1 HETATM 22 C C4A NAI . . . B 2 -23.718 14.999 -6.043 1 26.97 ? C4A NAI 500 A 1 HETATM 23 O O3 NAI . . . B 2 -30.524 15.317 -12.301 1 30.19 ? O3 NAI 500 A 1 HETATM 24 P PN NAI . . . B 2 -31.941 15.509 -11.545 1 27.55 ? PN NAI 500 A 1 HETATM 25 O O1N NAI . . . B 2 -32.966 14.735 -12.296 1 32.63 ? O1N NAI 500 A 1 HETATM 26 O O2N NAI . . . B 2 -32.147 16.969 -11.387 1 29.13 ? O2N NAI 500 A 1 HETATM 27 O O5D NAI . . . B 2 -31.559 14.689 -10.173 1 28.02 ? O5D NAI 500 A 1 HETATM 28 C C5D NAI . . . B 2 -31.991 15.301 -8.896 1 27.93 ? C5D NAI 500 A 1 HETATM 29 C C4D NAI . . . B 2 -32.804 14.34 -8.058 1 26.77 ? C4D NAI 500 A 1 HETATM 30 O O4D NAI . . . B 2 -34.09 14.086 -8.726 1 27.8 ? O4D NAI 500 A 1 HETATM 31 C C3D NAI . . . B 2 -32.101 13.002 -8.061 1 25.99 ? C3D NAI 500 A 1 HETATM 32 O O3D NAI . . . B 2 -32.264 12.447 -6.775 1 25.55 ? O3D NAI 500 A 1 HETATM 33 C C2D NAI . . . B 2 -32.943 12.159 -9.049 1 25.24 ? C2D NAI 500 A 1 HETATM 34 O O2D NAI . . . B 2 -32.836 10.748 -8.756 1 23.92 ? O2D NAI 500 A 1 HETATM 35 C C1D NAI . . . B 2 -34.294 12.637 -8.673 1 25.76 ? C1D NAI 500 A 1 HETATM 36 N N1N NAI . . . B 2 -35.383 12.34 -9.634 1 28.47 ? N1N NAI 500 A 1 HETATM 37 C C2N NAI . . . B 2 -35.165 12.508 -11.028 1 27.56 ? C2N NAI 500 A 1 HETATM 38 C C3N NAI . . . B 2 -36.2 12.247 -11.934 1 27.73 ? C3N NAI 500 A 1 HETATM 39 C C7N NAI . . . B 2 -35.965 12.431 -13.444 1 25.3 ? C7N NAI 500 A 1 HETATM 40 O O7N NAI . . . B 2 -36.79 11.902 -14.378 1 28.85 ? O7N NAI 500 A 1 HETATM 41 N N7N NAI . . . B 2 -34.969 13.237 -13.795 1 25.7 ? N7N NAI 500 A 1 HETATM 42 C C4N NAI . . . B 2 -37.444 11.837 -11.456 1 27.3 ? C4N NAI 500 A 1 HETATM 43 C C5N NAI . . . B 2 -37.65 11.677 -10.077 1 27.5 ? C5N NAI 500 A 1 HETATM 44 C C6N NAI . . . B 2 -36.639 11.94 -9.16 1 24.56 ? C6N NAI 500 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 44 #