data_4DRS # _model_server_result.job_id lA2jcgDSbfqD69sJy0hKEQ _model_server_result.datetime_utc '2024-11-05 00:23:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4drs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":604}' # _entry.id 4DRS # _exptl.entry_id 4DRS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4DRS _cell.length_a 129.895 _cell.length_b 136.941 _cell.length_c 77.233 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4DRS _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 L N N ? 3 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 26 A CYS 26 1_555 B SG CYS 312 B CYS 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf2 A SG CYS 312 A CYS 312 1_555 B SG CYS 26 B CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 135 n n C1 C2 GOL sing 136 n n C1 H11 GOL sing 137 n n C1 H12 GOL sing 138 n n O1 HO1 GOL sing 139 n n C2 O2 GOL sing 140 n n C2 C3 GOL sing 141 n n C2 H2 GOL sing 142 n n O2 HO2 GOL sing 143 n n C3 O3 GOL sing 144 n n C3 H31 GOL sing 145 n n C3 H32 GOL sing 146 n n O3 HO3 GOL sing 147 n n # _atom_sites.entry_id 4DRS _atom_sites.fract_transf_matrix[1][1] 0.007699 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007302 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012948 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 601 527 SO4 SO4 . D 2 SO4 A 1 602 528 SO4 SO4 . E 3 GOL A 1 603 529 GOL GOL . F 3 GOL A 1 604 530 GOL GOL . G 4 ACT A 1 605 531 ACT ACT . H 4 ACT A 1 606 532 ACT ACT . I 4 ACT A 1 607 533 ACT ACT . J 2 SO4 B 1 601 527 SO4 SO4 . K 2 SO4 B 1 602 528 SO4 SO4 . L 3 GOL B 1 603 529 GOL GOL . M 3 GOL B 1 604 530 GOL GOL . N 4 ACT B 1 605 531 ACT ACT . O 4 ACT B 1 606 532 ACT ACT . P 4 ACT B 1 607 533 ACT ACT . Q 5 HOH A 1 701 601 HOH HOH . Q 5 HOH A 2 702 602 HOH HOH . Q 5 HOH A 3 703 603 HOH HOH . Q 5 HOH A 4 704 604 HOH HOH . Q 5 HOH A 5 705 605 HOH HOH . Q 5 HOH A 6 706 606 HOH HOH . Q 5 HOH A 7 707 607 HOH HOH . Q 5 HOH A 8 708 608 HOH HOH . Q 5 HOH A 9 709 609 HOH HOH . Q 5 HOH A 10 710 610 HOH HOH . Q 5 HOH A 11 711 611 HOH HOH . Q 5 HOH A 12 712 612 HOH HOH . Q 5 HOH A 13 713 613 HOH HOH . Q 5 HOH A 14 714 614 HOH HOH . Q 5 HOH A 15 715 615 HOH HOH . Q 5 HOH A 16 716 616 HOH HOH . Q 5 HOH A 17 717 617 HOH HOH . Q 5 HOH A 18 718 618 HOH HOH . Q 5 HOH A 19 719 619 HOH HOH . Q 5 HOH A 20 720 620 HOH HOH . Q 5 HOH A 21 721 621 HOH HOH . Q 5 HOH A 22 722 622 HOH HOH . Q 5 HOH A 23 723 623 HOH HOH . Q 5 HOH A 24 724 624 HOH HOH . Q 5 HOH A 25 725 625 HOH HOH . Q 5 HOH A 26 726 626 HOH HOH . Q 5 HOH A 27 727 627 HOH HOH . Q 5 HOH A 28 728 628 HOH HOH . Q 5 HOH A 29 729 630 HOH HOH . Q 5 HOH A 30 730 631 HOH HOH . Q 5 HOH A 31 731 632 HOH HOH . Q 5 HOH A 32 732 633 HOH HOH . Q 5 HOH A 33 733 634 HOH HOH . Q 5 HOH A 34 734 635 HOH HOH . Q 5 HOH A 35 735 636 HOH HOH . Q 5 HOH A 36 736 637 HOH HOH . Q 5 HOH A 37 737 638 HOH HOH . Q 5 HOH A 38 738 639 HOH HOH . Q 5 HOH A 39 739 640 HOH HOH . Q 5 HOH A 40 740 641 HOH HOH . Q 5 HOH A 41 741 670 HOH HOH . Q 5 HOH A 42 742 684 HOH HOH . Q 5 HOH A 43 743 687 HOH HOH . Q 5 HOH A 44 744 688 HOH HOH . Q 5 HOH A 45 745 689 HOH HOH . Q 5 HOH A 46 746 690 HOH HOH . Q 5 HOH A 47 747 692 HOH HOH . Q 5 HOH A 48 748 694 HOH HOH . Q 5 HOH A 49 749 697 HOH HOH . Q 5 HOH A 50 750 701 HOH HOH . Q 5 HOH A 51 751 702 HOH HOH . Q 5 HOH A 52 752 704 HOH HOH . Q 5 HOH A 53 753 705 HOH HOH . Q 5 HOH A 54 754 706 HOH HOH . Q 5 HOH A 55 755 708 HOH HOH . Q 5 HOH A 56 756 711 HOH HOH . Q 5 HOH A 57 757 715 HOH HOH . Q 5 HOH A 58 758 716 HOH HOH . Q 5 HOH A 59 759 717 HOH HOH . Q 5 HOH A 60 760 718 HOH HOH . Q 5 HOH A 61 761 722 HOH HOH . Q 5 HOH A 62 762 723 HOH HOH . Q 5 HOH A 63 763 727 HOH HOH . Q 5 HOH A 64 764 728 HOH HOH . Q 5 HOH A 65 765 731 HOH HOH . Q 5 HOH A 66 766 734 HOH HOH . Q 5 HOH A 67 767 735 HOH HOH . Q 5 HOH A 68 768 738 HOH HOH . Q 5 HOH A 69 769 739 HOH HOH . Q 5 HOH A 70 770 742 HOH HOH . Q 5 HOH A 71 771 744 HOH HOH . Q 5 HOH A 72 772 745 HOH HOH . Q 5 HOH A 73 773 748 HOH HOH . Q 5 HOH A 74 774 749 HOH HOH . R 5 HOH B 1 701 629 HOH HOH . R 5 HOH B 2 702 642 HOH HOH . R 5 HOH B 3 703 643 HOH HOH . R 5 HOH B 4 704 644 HOH HOH . R 5 HOH B 5 705 645 HOH HOH . R 5 HOH B 6 706 646 HOH HOH . R 5 HOH B 7 707 647 HOH HOH . R 5 HOH B 8 708 648 HOH HOH . R 5 HOH B 9 709 649 HOH HOH . R 5 HOH B 10 710 650 HOH HOH . R 5 HOH B 11 711 651 HOH HOH . R 5 HOH B 12 712 652 HOH HOH . R 5 HOH B 13 713 653 HOH HOH . R 5 HOH B 14 714 654 HOH HOH . R 5 HOH B 15 715 655 HOH HOH . R 5 HOH B 16 716 656 HOH HOH . R 5 HOH B 17 717 657 HOH HOH . R 5 HOH B 18 718 658 HOH HOH . R 5 HOH B 19 719 659 HOH HOH . R 5 HOH B 20 720 660 HOH HOH . R 5 HOH B 21 721 661 HOH HOH . R 5 HOH B 22 722 662 HOH HOH . R 5 HOH B 23 723 663 HOH HOH . R 5 HOH B 24 724 664 HOH HOH . R 5 HOH B 25 725 665 HOH HOH . R 5 HOH B 26 726 666 HOH HOH . R 5 HOH B 27 727 667 HOH HOH . R 5 HOH B 28 728 668 HOH HOH . R 5 HOH B 29 729 669 HOH HOH . R 5 HOH B 30 730 671 HOH HOH . R 5 HOH B 31 731 672 HOH HOH . R 5 HOH B 32 732 673 HOH HOH . R 5 HOH B 33 733 674 HOH HOH . R 5 HOH B 34 734 675 HOH HOH . R 5 HOH B 35 735 676 HOH HOH . R 5 HOH B 36 736 677 HOH HOH . R 5 HOH B 37 737 678 HOH HOH . R 5 HOH B 38 738 679 HOH HOH . R 5 HOH B 39 739 680 HOH HOH . R 5 HOH B 40 740 681 HOH HOH . R 5 HOH B 41 741 682 HOH HOH . R 5 HOH B 42 742 683 HOH HOH . R 5 HOH B 43 743 685 HOH HOH . R 5 HOH B 44 744 686 HOH HOH . R 5 HOH B 45 745 691 HOH HOH . R 5 HOH B 46 746 693 HOH HOH . R 5 HOH B 47 747 695 HOH HOH . R 5 HOH B 48 748 696 HOH HOH . R 5 HOH B 49 749 698 HOH HOH . R 5 HOH B 50 750 699 HOH HOH . R 5 HOH B 51 751 700 HOH HOH . R 5 HOH B 52 752 703 HOH HOH . R 5 HOH B 53 753 707 HOH HOH . R 5 HOH B 54 754 709 HOH HOH . R 5 HOH B 55 755 710 HOH HOH . R 5 HOH B 56 756 712 HOH HOH . R 5 HOH B 57 757 713 HOH HOH . R 5 HOH B 58 758 714 HOH HOH . R 5 HOH B 59 759 719 HOH HOH . R 5 HOH B 60 760 720 HOH HOH . R 5 HOH B 61 761 721 HOH HOH . R 5 HOH B 62 762 724 HOH HOH . R 5 HOH B 63 763 725 HOH HOH . R 5 HOH B 64 764 726 HOH HOH . R 5 HOH B 65 765 729 HOH HOH . R 5 HOH B 66 766 730 HOH HOH . R 5 HOH B 67 767 732 HOH HOH . R 5 HOH B 68 768 733 HOH HOH . R 5 HOH B 69 769 736 HOH HOH . R 5 HOH B 70 770 737 HOH HOH . R 5 HOH B 71 771 740 HOH HOH . R 5 HOH B 72 772 741 HOH HOH . R 5 HOH B 73 773 743 HOH HOH . R 5 HOH B 74 774 746 HOH HOH . R 5 HOH B 75 775 747 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 3 39.921 -22.819 -9.996 1 51.75 ? C1 GOL 604 A 1 HETATM 2 O O1 GOL . . . F 3 39.319 -22.893 -8.691 1 53.19 ? O1 GOL 604 A 1 HETATM 3 C C2 GOL . . . F 3 40.017 -24.235 -10.534 1 47.84 ? C2 GOL 604 A 1 HETATM 4 O O2 GOL . . . F 3 38.688 -24.754 -10.567 1 51.45 ? O2 GOL 604 A 1 HETATM 5 C C3 GOL . . . F 3 40.587 -24.247 -11.939 1 48.15 ? C3 GOL 604 A 1 HETATM 6 O O3 GOL . . . F 3 40.248 -25.497 -12.553 1 49.2 ? O3 GOL 604 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #