data_4DSD # _model_server_result.job_id e5tlSkXSl-G8weedhl6Nfw _model_server_result.datetime_utc '2025-02-13 20:05:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4dsd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":202}' # _entry.id 4DSD # _exptl.entry_id 4DSD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4DSD _cell.length_a 107.381 _cell.length_b 107.381 _cell.length_c 63.01 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4DSD _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,K 1 1 B,F,G,H,I,J,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ASP 8 A ASP 27 1_555 A N MSE 9 A MSE 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale2 A C MSE 9 A MSE 28 1_555 A N ASN 10 A ASN 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 A C ASP 37 A ASP 56 1_555 A N MSE 38 A MSE 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 A C MSE 38 A MSE 57 1_555 A N MSE 39 A MSE 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale5 A C MSE 39 A MSE 58 1_555 A N GLU 40 A GLU 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale6 A C LEU 48 A LEU 67 1_555 A N MSE 49 A MSE 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale7 A C MSE 49 A MSE 68 1_555 A N ASP 50 A ASP 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale8 B C ASP 8 B ASP 27 1_555 B N MSE 9 B MSE 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale9 B C MSE 9 B MSE 28 1_555 B N ASN 10 B ASN 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale10 B C ASP 37 B ASP 56 1_555 B N MSE 38 B MSE 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale11 B C MSE 38 B MSE 57 1_555 B N MSE 39 B MSE 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale12 B C MSE 39 B MSE 58 1_555 B N GLU 40 B GLU 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale13 B C LEU 48 B LEU 67 1_555 B N MSE 49 B MSE 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale14 B C MSE 49 B MSE 68 1_555 B N ASP 50 B ASP 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 70 n n C1 C2 EDO sing 71 n n C1 H11 EDO sing 72 n n C1 H12 EDO sing 73 n n O1 HO1 EDO sing 74 n n C2 O2 EDO sing 75 n n C2 H21 EDO sing 76 n n C2 H22 EDO sing 77 n n O2 HO2 EDO sing 78 n n # _atom_sites.entry_id 4DSD _atom_sites.fract_transf_matrix[1][1] 0.009313 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009313 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015871 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EDO A 1 201 200 EDO EDO . D 2 EDO A 1 202 204 EDO EDO . E 2 EDO A 1 203 206 EDO EDO . F 2 EDO B 1 201 201 EDO EDO . G 2 EDO B 1 202 202 EDO EDO . H 2 EDO B 1 203 203 EDO EDO . I 2 EDO B 1 204 205 EDO EDO . J 2 EDO B 1 205 207 EDO EDO . K 3 HOH A 1 301 208 HOH HOH . K 3 HOH A 2 302 209 HOH HOH . K 3 HOH A 3 303 210 HOH HOH . K 3 HOH A 4 304 213 HOH HOH . K 3 HOH A 5 305 215 HOH HOH . K 3 HOH A 6 306 216 HOH HOH . K 3 HOH A 7 307 218 HOH HOH . K 3 HOH A 8 308 219 HOH HOH . K 3 HOH A 9 309 222 HOH HOH . K 3 HOH A 10 310 223 HOH HOH . K 3 HOH A 11 311 225 HOH HOH . K 3 HOH A 12 312 226 HOH HOH . K 3 HOH A 13 313 228 HOH HOH . K 3 HOH A 14 314 229 HOH HOH . K 3 HOH A 15 315 235 HOH HOH . K 3 HOH A 16 316 236 HOH HOH . K 3 HOH A 17 317 238 HOH HOH . K 3 HOH A 18 318 240 HOH HOH . K 3 HOH A 19 319 241 HOH HOH . K 3 HOH A 20 320 243 HOH HOH . K 3 HOH A 21 321 245 HOH HOH . K 3 HOH A 22 322 246 HOH HOH . K 3 HOH A 23 323 247 HOH HOH . K 3 HOH A 24 324 250 HOH HOH . K 3 HOH A 25 325 251 HOH HOH . K 3 HOH A 26 326 252 HOH HOH . K 3 HOH A 27 327 254 HOH HOH . K 3 HOH A 28 328 259 HOH HOH . K 3 HOH A 29 329 260 HOH HOH . K 3 HOH A 30 330 261 HOH HOH . K 3 HOH A 31 331 262 HOH HOH . K 3 HOH A 32 332 264 HOH HOH . K 3 HOH A 33 333 265 HOH HOH . K 3 HOH A 34 334 266 HOH HOH . K 3 HOH A 35 335 270 HOH HOH . K 3 HOH A 36 336 271 HOH HOH . K 3 HOH A 37 337 274 HOH HOH . K 3 HOH A 38 338 277 HOH HOH . K 3 HOH A 39 339 280 HOH HOH . K 3 HOH A 40 340 281 HOH HOH . K 3 HOH A 41 341 283 HOH HOH . K 3 HOH A 42 342 284 HOH HOH . K 3 HOH A 43 343 286 HOH HOH . K 3 HOH A 44 344 287 HOH HOH . K 3 HOH A 45 345 288 HOH HOH . K 3 HOH A 46 346 290 HOH HOH . K 3 HOH A 47 347 291 HOH HOH . K 3 HOH A 48 348 292 HOH HOH . K 3 HOH A 49 349 293 HOH HOH . K 3 HOH A 50 350 294 HOH HOH . K 3 HOH A 51 351 295 HOH HOH . K 3 HOH A 52 352 296 HOH HOH . K 3 HOH A 53 353 297 HOH HOH . K 3 HOH A 54 354 302 HOH HOH . K 3 HOH A 55 355 305 HOH HOH . K 3 HOH A 56 356 306 HOH HOH . K 3 HOH A 57 357 313 HOH HOH . K 3 HOH A 58 358 314 HOH HOH . K 3 HOH A 59 359 315 HOH HOH . K 3 HOH A 60 360 317 HOH HOH . K 3 HOH A 61 361 318 HOH HOH . K 3 HOH A 62 362 319 HOH HOH . K 3 HOH A 63 363 321 HOH HOH . K 3 HOH A 64 364 323 HOH HOH . K 3 HOH A 65 365 326 HOH HOH . K 3 HOH A 66 366 327 HOH HOH . K 3 HOH A 67 367 330 HOH HOH . K 3 HOH A 68 368 332 HOH HOH . K 3 HOH A 69 369 333 HOH HOH . K 3 HOH A 70 370 334 HOH HOH . K 3 HOH A 71 371 335 HOH HOH . K 3 HOH A 72 372 337 HOH HOH . K 3 HOH A 73 373 339 HOH HOH . K 3 HOH A 74 374 342 HOH HOH . K 3 HOH A 75 375 343 HOH HOH . K 3 HOH A 76 376 344 HOH HOH . K 3 HOH A 77 377 348 HOH HOH . K 3 HOH A 78 378 352 HOH HOH . K 3 HOH A 79 379 353 HOH HOH . K 3 HOH A 80 380 354 HOH HOH . K 3 HOH A 81 381 357 HOH HOH . K 3 HOH A 82 382 358 HOH HOH . K 3 HOH A 83 383 359 HOH HOH . K 3 HOH A 84 384 360 HOH HOH . K 3 HOH A 85 385 364 HOH HOH . K 3 HOH A 86 386 365 HOH HOH . K 3 HOH A 87 387 366 HOH HOH . K 3 HOH A 88 388 367 HOH HOH . K 3 HOH A 89 389 369 HOH HOH . K 3 HOH A 90 390 377 HOH HOH . K 3 HOH A 91 391 378 HOH HOH . K 3 HOH A 92 392 379 HOH HOH . K 3 HOH A 93 393 382 HOH HOH . K 3 HOH A 94 394 384 HOH HOH . K 3 HOH A 95 395 386 HOH HOH . K 3 HOH A 96 396 387 HOH HOH . K 3 HOH A 97 397 388 HOH HOH . K 3 HOH A 98 398 389 HOH HOH . K 3 HOH A 99 399 394 HOH HOH . K 3 HOH A 100 400 395 HOH HOH . K 3 HOH A 101 401 401 HOH HOH . K 3 HOH A 102 402 403 HOH HOH . K 3 HOH A 103 403 404 HOH HOH . K 3 HOH A 104 404 407 HOH HOH . K 3 HOH A 105 405 409 HOH HOH . K 3 HOH A 106 406 411 HOH HOH . K 3 HOH A 107 407 414 HOH HOH . K 3 HOH A 108 408 415 HOH HOH . K 3 HOH A 109 409 420 HOH HOH . K 3 HOH A 110 410 421 HOH HOH . K 3 HOH A 111 411 423 HOH HOH . K 3 HOH A 112 412 424 HOH HOH . K 3 HOH A 113 413 427 HOH HOH . K 3 HOH A 114 414 430 HOH HOH . K 3 HOH A 115 415 434 HOH HOH . K 3 HOH A 116 416 435 HOH HOH . K 3 HOH A 117 417 436 HOH HOH . K 3 HOH A 118 418 437 HOH HOH . K 3 HOH A 119 419 438 HOH HOH . K 3 HOH A 120 420 439 HOH HOH . K 3 HOH A 121 421 440 HOH HOH . K 3 HOH A 122 422 441 HOH HOH . K 3 HOH A 123 423 446 HOH HOH . K 3 HOH A 124 424 447 HOH HOH . K 3 HOH A 125 425 449 HOH HOH . L 3 HOH B 1 301 211 HOH HOH . L 3 HOH B 2 302 212 HOH HOH . L 3 HOH B 3 303 214 HOH HOH . L 3 HOH B 4 304 217 HOH HOH . L 3 HOH B 5 305 220 HOH HOH . L 3 HOH B 6 306 221 HOH HOH . L 3 HOH B 7 307 224 HOH HOH . L 3 HOH B 8 308 227 HOH HOH . L 3 HOH B 9 309 230 HOH HOH . L 3 HOH B 10 310 231 HOH HOH . L 3 HOH B 11 311 232 HOH HOH . L 3 HOH B 12 312 233 HOH HOH . L 3 HOH B 13 313 234 HOH HOH . L 3 HOH B 14 314 237 HOH HOH . L 3 HOH B 15 315 239 HOH HOH . L 3 HOH B 16 316 242 HOH HOH . L 3 HOH B 17 317 244 HOH HOH . L 3 HOH B 18 318 248 HOH HOH . L 3 HOH B 19 319 249 HOH HOH . L 3 HOH B 20 320 253 HOH HOH . L 3 HOH B 21 321 255 HOH HOH . L 3 HOH B 22 322 256 HOH HOH . L 3 HOH B 23 323 257 HOH HOH . L 3 HOH B 24 324 258 HOH HOH . L 3 HOH B 25 325 263 HOH HOH . L 3 HOH B 26 326 267 HOH HOH . L 3 HOH B 27 327 268 HOH HOH . L 3 HOH B 28 328 269 HOH HOH . L 3 HOH B 29 329 272 HOH HOH . L 3 HOH B 30 330 273 HOH HOH . L 3 HOH B 31 331 275 HOH HOH . L 3 HOH B 32 332 276 HOH HOH . L 3 HOH B 33 333 278 HOH HOH . L 3 HOH B 34 334 279 HOH HOH . L 3 HOH B 35 335 282 HOH HOH . L 3 HOH B 36 336 285 HOH HOH . L 3 HOH B 37 337 289 HOH HOH . L 3 HOH B 38 338 298 HOH HOH . L 3 HOH B 39 339 299 HOH HOH . L 3 HOH B 40 340 300 HOH HOH . L 3 HOH B 41 341 301 HOH HOH . L 3 HOH B 42 342 303 HOH HOH . L 3 HOH B 43 343 304 HOH HOH . L 3 HOH B 44 344 307 HOH HOH . L 3 HOH B 45 345 308 HOH HOH . L 3 HOH B 46 346 309 HOH HOH . L 3 HOH B 47 347 310 HOH HOH . L 3 HOH B 48 348 311 HOH HOH . L 3 HOH B 49 349 312 HOH HOH . L 3 HOH B 50 350 316 HOH HOH . L 3 HOH B 51 351 320 HOH HOH . L 3 HOH B 52 352 322 HOH HOH . L 3 HOH B 53 353 324 HOH HOH . L 3 HOH B 54 354 325 HOH HOH . L 3 HOH B 55 355 328 HOH HOH . L 3 HOH B 56 356 329 HOH HOH . L 3 HOH B 57 357 331 HOH HOH . L 3 HOH B 58 358 336 HOH HOH . L 3 HOH B 59 359 338 HOH HOH . L 3 HOH B 60 360 340 HOH HOH . L 3 HOH B 61 361 341 HOH HOH . L 3 HOH B 62 362 345 HOH HOH . L 3 HOH B 63 363 346 HOH HOH . L 3 HOH B 64 364 347 HOH HOH . L 3 HOH B 65 365 349 HOH HOH . L 3 HOH B 66 366 350 HOH HOH . L 3 HOH B 67 367 351 HOH HOH . L 3 HOH B 68 368 355 HOH HOH . L 3 HOH B 69 369 356 HOH HOH . L 3 HOH B 70 370 361 HOH HOH . L 3 HOH B 71 371 362 HOH HOH . L 3 HOH B 72 372 363 HOH HOH . L 3 HOH B 73 373 368 HOH HOH . L 3 HOH B 74 374 370 HOH HOH . L 3 HOH B 75 375 371 HOH HOH . L 3 HOH B 76 376 372 HOH HOH . L 3 HOH B 77 377 373 HOH HOH . L 3 HOH B 78 378 374 HOH HOH . L 3 HOH B 79 379 375 HOH HOH . L 3 HOH B 80 380 376 HOH HOH . L 3 HOH B 81 381 380 HOH HOH . L 3 HOH B 82 382 381 HOH HOH . L 3 HOH B 83 383 383 HOH HOH . L 3 HOH B 84 384 385 HOH HOH . L 3 HOH B 85 385 390 HOH HOH . L 3 HOH B 86 386 391 HOH HOH . L 3 HOH B 87 387 392 HOH HOH . L 3 HOH B 88 388 393 HOH HOH . L 3 HOH B 89 389 396 HOH HOH . L 3 HOH B 90 390 397 HOH HOH . L 3 HOH B 91 391 398 HOH HOH . L 3 HOH B 92 392 399 HOH HOH . L 3 HOH B 93 393 400 HOH HOH . L 3 HOH B 94 394 402 HOH HOH . L 3 HOH B 95 395 405 HOH HOH . L 3 HOH B 96 396 406 HOH HOH . L 3 HOH B 97 397 408 HOH HOH . L 3 HOH B 98 398 410 HOH HOH . L 3 HOH B 99 399 412 HOH HOH . L 3 HOH B 100 400 413 HOH HOH . L 3 HOH B 101 401 416 HOH HOH . L 3 HOH B 102 402 417 HOH HOH . L 3 HOH B 103 403 418 HOH HOH . L 3 HOH B 104 404 419 HOH HOH . L 3 HOH B 105 405 422 HOH HOH . L 3 HOH B 106 406 425 HOH HOH . L 3 HOH B 107 407 426 HOH HOH . L 3 HOH B 108 408 428 HOH HOH . L 3 HOH B 109 409 429 HOH HOH . L 3 HOH B 110 410 431 HOH HOH . L 3 HOH B 111 411 432 HOH HOH . L 3 HOH B 112 412 433 HOH HOH . L 3 HOH B 113 413 442 HOH HOH . L 3 HOH B 114 414 443 HOH HOH . L 3 HOH B 115 415 444 HOH HOH . L 3 HOH B 116 416 445 HOH HOH . L 3 HOH B 117 417 448 HOH HOH . L 3 HOH B 118 418 450 HOH HOH . L 3 HOH B 119 419 451 HOH HOH . L 3 HOH B 120 420 452 HOH HOH . L 3 HOH B 121 421 453 HOH HOH . L 3 HOH B 122 422 454 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . G 2 47.584 29.191 27.778 1 77.94 ? C1 EDO 202 B 1 HETATM 2 O O1 EDO . . . G 2 46.829 30.331 27.329 1 78.36 ? O1 EDO 202 B 1 HETATM 3 C C2 EDO . . . G 2 48.906 29.047 27.024 1 71.9 ? C2 EDO 202 B 1 HETATM 4 O O2 EDO . . . G 2 49.177 27.649 26.878 1 77.02 ? O2 EDO 202 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 4 #