data_4DSH # _model_server_result.job_id nCXtfEFucEGUNw9vGBtrKw _model_server_result.datetime_utc '2025-01-02 18:59:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4dsh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":506}' # _entry.id 4DSH # _exptl.entry_id 4DSH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.305 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4DSH _cell.length_a 143.84 _cell.length_b 143.84 _cell.length_c 354.389 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4DSH _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,L 1 1 B,I,J,K,M 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 169 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 166 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 169 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 166 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.11 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C8 H18 N2 O4 S' _chem_comp.formula_weight 238.305 _chem_comp.id EPE _chem_comp.mon_nstd_flag . _chem_comp.name '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEPES # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 EPE sing 83 n n N1 C6 EPE sing 84 n n N1 C9 EPE sing 85 n n C2 C3 EPE sing 86 n n C2 H21 EPE sing 87 n n C2 H22 EPE sing 88 n n C3 N4 EPE sing 89 n n C3 H31 EPE sing 90 n n C3 H32 EPE sing 91 n n N4 C5 EPE sing 92 n n N4 C7 EPE sing 93 n n C5 C6 EPE sing 94 n n C5 H51 EPE sing 95 n n C5 H52 EPE sing 96 n n C6 H61 EPE sing 97 n n C6 H62 EPE sing 98 n n C7 C8 EPE sing 99 n n C7 H71 EPE sing 100 n n C7 H72 EPE sing 101 n n C8 O8 EPE sing 102 n n C8 H81 EPE sing 103 n n C8 H82 EPE sing 104 n n O8 HO8 EPE sing 105 n n C9 C10 EPE sing 106 n n C9 H91 EPE sing 107 n n C9 H92 EPE sing 108 n n C10 S EPE sing 109 n n C10 H101 EPE sing 110 n n C10 H102 EPE sing 111 n n S O1S EPE doub 112 n n S O2S EPE doub 113 n n S O3S EPE sing 114 n n O3S HOS3 EPE sing 115 n n # _atom_sites.entry_id 4DSH _atom_sites.fract_transf_matrix[1][1] 0.006952 _atom_sites.fract_transf_matrix[1][2] 0.004014 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008028 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002822 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 UDP A 1 501 1 UDP UDP . D 3 FDA A 1 502 1 FDA FDA . E 4 SO4 A 1 503 1 SO4 SO4 . F 4 SO4 A 1 504 3 SO4 SO4 . G 4 SO4 A 1 505 6 SO4 SO4 . H 5 EPE A 1 506 201 EPE EPE . I 3 FDA B 1 501 1 FDA FDA . J 2 UDP B 1 502 1 UDP UDP . K 4 SO4 B 1 503 5 SO4 SO4 . L 6 HOH A 1 601 1 HOH HOH . L 6 HOH A 2 602 2 HOH HOH . L 6 HOH A 3 603 3 HOH HOH . L 6 HOH A 4 604 4 HOH HOH . L 6 HOH A 5 605 5 HOH HOH . L 6 HOH A 6 606 6 HOH HOH . L 6 HOH A 7 607 7 HOH HOH . L 6 HOH A 8 608 9 HOH HOH . L 6 HOH A 9 609 10 HOH HOH . L 6 HOH A 10 610 11 HOH HOH . L 6 HOH A 11 611 12 HOH HOH . L 6 HOH A 12 612 13 HOH HOH . L 6 HOH A 13 613 14 HOH HOH . L 6 HOH A 14 614 15 HOH HOH . L 6 HOH A 15 615 16 HOH HOH . L 6 HOH A 16 616 17 HOH HOH . L 6 HOH A 17 617 18 HOH HOH . L 6 HOH A 18 618 19 HOH HOH . L 6 HOH A 19 619 20 HOH HOH . L 6 HOH A 20 620 21 HOH HOH . L 6 HOH A 21 621 22 HOH HOH . L 6 HOH A 22 622 23 HOH HOH . L 6 HOH A 23 623 24 HOH HOH . L 6 HOH A 24 624 25 HOH HOH . L 6 HOH A 25 625 26 HOH HOH . L 6 HOH A 26 626 27 HOH HOH . L 6 HOH A 27 627 28 HOH HOH . L 6 HOH A 28 628 29 HOH HOH . L 6 HOH A 29 629 64 HOH HOH . L 6 HOH A 30 630 88 HOH HOH . L 6 HOH A 31 631 89 HOH HOH . L 6 HOH A 32 632 90 HOH HOH . L 6 HOH A 33 633 91 HOH HOH . L 6 HOH A 34 634 92 HOH HOH . L 6 HOH A 35 635 93 HOH HOH . L 6 HOH A 36 636 94 HOH HOH . L 6 HOH A 37 637 95 HOH HOH . L 6 HOH A 38 638 96 HOH HOH . L 6 HOH A 39 639 97 HOH HOH . L 6 HOH A 40 640 98 HOH HOH . L 6 HOH A 41 641 99 HOH HOH . L 6 HOH A 42 642 100 HOH HOH . L 6 HOH A 43 643 101 HOH HOH . L 6 HOH A 44 644 102 HOH HOH . L 6 HOH A 45 645 103 HOH HOH . L 6 HOH A 46 646 104 HOH HOH . L 6 HOH A 47 647 105 HOH HOH . L 6 HOH A 48 648 106 HOH HOH . L 6 HOH A 49 649 107 HOH HOH . L 6 HOH A 50 650 108 HOH HOH . L 6 HOH A 51 651 109 HOH HOH . L 6 HOH A 52 652 110 HOH HOH . L 6 HOH A 53 653 111 HOH HOH . L 6 HOH A 54 654 114 HOH HOH . L 6 HOH A 55 655 118 HOH HOH . L 6 HOH A 56 656 119 HOH HOH . L 6 HOH A 57 657 120 HOH HOH . L 6 HOH A 58 658 121 HOH HOH . L 6 HOH A 59 659 122 HOH HOH . L 6 HOH A 60 660 123 HOH HOH . L 6 HOH A 61 661 124 HOH HOH . L 6 HOH A 62 662 125 HOH HOH . L 6 HOH A 63 663 126 HOH HOH . L 6 HOH A 64 664 127 HOH HOH . L 6 HOH A 65 665 128 HOH HOH . L 6 HOH A 66 666 129 HOH HOH . L 6 HOH A 67 667 130 HOH HOH . L 6 HOH A 68 668 131 HOH HOH . L 6 HOH A 69 669 132 HOH HOH . L 6 HOH A 70 670 133 HOH HOH . L 6 HOH A 71 671 134 HOH HOH . L 6 HOH A 72 672 135 HOH HOH . L 6 HOH A 73 673 136 HOH HOH . L 6 HOH A 74 674 137 HOH HOH . L 6 HOH A 75 675 138 HOH HOH . L 6 HOH A 76 676 140 HOH HOH . L 6 HOH A 77 677 141 HOH HOH . L 6 HOH A 78 678 142 HOH HOH . L 6 HOH A 79 679 143 HOH HOH . L 6 HOH A 80 680 144 HOH HOH . L 6 HOH A 81 681 145 HOH HOH . L 6 HOH A 82 682 146 HOH HOH . L 6 HOH A 83 683 147 HOH HOH . L 6 HOH A 84 684 148 HOH HOH . L 6 HOH A 85 685 150 HOH HOH . L 6 HOH A 86 686 151 HOH HOH . L 6 HOH A 87 687 152 HOH HOH . L 6 HOH A 88 688 157 HOH HOH . L 6 HOH A 89 689 158 HOH HOH . L 6 HOH A 90 690 159 HOH HOH . L 6 HOH A 91 691 160 HOH HOH . L 6 HOH A 92 692 161 HOH HOH . L 6 HOH A 93 693 162 HOH HOH . L 6 HOH A 94 694 163 HOH HOH . L 6 HOH A 95 695 164 HOH HOH . L 6 HOH A 96 696 165 HOH HOH . L 6 HOH A 97 697 166 HOH HOH . L 6 HOH A 98 698 167 HOH HOH . L 6 HOH A 99 699 168 HOH HOH . L 6 HOH A 100 700 170 HOH HOH . L 6 HOH A 101 701 171 HOH HOH . L 6 HOH A 102 702 172 HOH HOH . L 6 HOH A 103 703 178 HOH HOH . L 6 HOH A 104 704 179 HOH HOH . L 6 HOH A 105 705 180 HOH HOH . L 6 HOH A 106 706 181 HOH HOH . L 6 HOH A 107 707 183 HOH HOH . L 6 HOH A 108 708 186 HOH HOH . L 6 HOH A 109 709 187 HOH HOH . L 6 HOH A 110 710 188 HOH HOH . L 6 HOH A 111 711 189 HOH HOH . L 6 HOH A 112 712 190 HOH HOH . L 6 HOH A 113 713 191 HOH HOH . L 6 HOH A 114 714 192 HOH HOH . L 6 HOH A 115 715 193 HOH HOH . L 6 HOH A 116 716 194 HOH HOH . L 6 HOH A 117 717 195 HOH HOH . L 6 HOH A 118 718 202 HOH HOH . L 6 HOH A 119 719 203 HOH HOH . L 6 HOH A 120 720 204 HOH HOH . L 6 HOH A 121 721 205 HOH HOH . L 6 HOH A 122 722 207 HOH HOH . L 6 HOH A 123 723 208 HOH HOH . L 6 HOH A 124 724 209 HOH HOH . L 6 HOH A 125 725 210 HOH HOH . L 6 HOH A 126 726 211 HOH HOH . L 6 HOH A 127 727 213 HOH HOH . L 6 HOH A 128 728 214 HOH HOH . L 6 HOH A 129 729 215 HOH HOH . L 6 HOH A 130 730 216 HOH HOH . L 6 HOH A 131 731 217 HOH HOH . L 6 HOH A 132 732 241 HOH HOH . L 6 HOH A 133 733 246 HOH HOH . M 6 HOH B 1 601 8 HOH HOH . M 6 HOH B 2 602 30 HOH HOH . M 6 HOH B 3 603 31 HOH HOH . M 6 HOH B 4 604 32 HOH HOH . M 6 HOH B 5 605 33 HOH HOH . M 6 HOH B 6 606 34 HOH HOH . M 6 HOH B 7 607 35 HOH HOH . M 6 HOH B 8 608 36 HOH HOH . M 6 HOH B 9 609 37 HOH HOH . M 6 HOH B 10 610 38 HOH HOH . M 6 HOH B 11 611 39 HOH HOH . M 6 HOH B 12 612 40 HOH HOH . M 6 HOH B 13 613 41 HOH HOH . M 6 HOH B 14 614 42 HOH HOH . M 6 HOH B 15 615 43 HOH HOH . M 6 HOH B 16 616 44 HOH HOH . M 6 HOH B 17 617 45 HOH HOH . M 6 HOH B 18 618 46 HOH HOH . M 6 HOH B 19 619 47 HOH HOH . M 6 HOH B 20 620 48 HOH HOH . M 6 HOH B 21 621 49 HOH HOH . M 6 HOH B 22 622 50 HOH HOH . M 6 HOH B 23 623 51 HOH HOH . M 6 HOH B 24 624 52 HOH HOH . M 6 HOH B 25 625 53 HOH HOH . M 6 HOH B 26 626 54 HOH HOH . M 6 HOH B 27 627 55 HOH HOH . M 6 HOH B 28 628 56 HOH HOH . M 6 HOH B 29 629 57 HOH HOH . M 6 HOH B 30 630 58 HOH HOH . M 6 HOH B 31 631 59 HOH HOH . M 6 HOH B 32 632 60 HOH HOH . M 6 HOH B 33 633 61 HOH HOH . M 6 HOH B 34 634 62 HOH HOH . M 6 HOH B 35 635 63 HOH HOH . M 6 HOH B 36 636 65 HOH HOH . M 6 HOH B 37 637 66 HOH HOH . M 6 HOH B 38 638 67 HOH HOH . M 6 HOH B 39 639 68 HOH HOH . M 6 HOH B 40 640 69 HOH HOH . M 6 HOH B 41 641 70 HOH HOH . M 6 HOH B 42 642 71 HOH HOH . M 6 HOH B 43 643 72 HOH HOH . M 6 HOH B 44 644 73 HOH HOH . M 6 HOH B 45 645 74 HOH HOH . M 6 HOH B 46 646 75 HOH HOH . M 6 HOH B 47 647 76 HOH HOH . M 6 HOH B 48 648 77 HOH HOH . M 6 HOH B 49 649 78 HOH HOH . M 6 HOH B 50 650 79 HOH HOH . M 6 HOH B 51 651 80 HOH HOH . M 6 HOH B 52 652 81 HOH HOH . M 6 HOH B 53 653 82 HOH HOH . M 6 HOH B 54 654 83 HOH HOH . M 6 HOH B 55 655 84 HOH HOH . M 6 HOH B 56 656 85 HOH HOH . M 6 HOH B 57 657 86 HOH HOH . M 6 HOH B 58 658 87 HOH HOH . M 6 HOH B 59 659 112 HOH HOH . M 6 HOH B 60 660 113 HOH HOH . M 6 HOH B 61 661 115 HOH HOH . M 6 HOH B 62 662 116 HOH HOH . M 6 HOH B 63 663 117 HOH HOH . M 6 HOH B 64 664 139 HOH HOH . M 6 HOH B 65 665 149 HOH HOH . M 6 HOH B 66 666 153 HOH HOH . M 6 HOH B 67 667 154 HOH HOH . M 6 HOH B 68 668 155 HOH HOH . M 6 HOH B 69 669 156 HOH HOH . M 6 HOH B 70 670 169 HOH HOH . M 6 HOH B 71 671 173 HOH HOH . M 6 HOH B 72 672 174 HOH HOH . M 6 HOH B 73 673 175 HOH HOH . M 6 HOH B 74 674 176 HOH HOH . M 6 HOH B 75 675 177 HOH HOH . M 6 HOH B 76 676 182 HOH HOH . M 6 HOH B 77 677 184 HOH HOH . M 6 HOH B 78 678 185 HOH HOH . M 6 HOH B 79 679 196 HOH HOH . M 6 HOH B 80 680 197 HOH HOH . M 6 HOH B 81 681 198 HOH HOH . M 6 HOH B 82 682 199 HOH HOH . M 6 HOH B 83 683 200 HOH HOH . M 6 HOH B 84 684 201 HOH HOH . M 6 HOH B 85 685 206 HOH HOH . M 6 HOH B 86 686 212 HOH HOH . M 6 HOH B 87 687 218 HOH HOH . M 6 HOH B 88 688 219 HOH HOH . M 6 HOH B 89 689 220 HOH HOH . M 6 HOH B 90 690 221 HOH HOH . M 6 HOH B 91 691 222 HOH HOH . M 6 HOH B 92 692 223 HOH HOH . M 6 HOH B 93 693 224 HOH HOH . M 6 HOH B 94 694 225 HOH HOH . M 6 HOH B 95 695 226 HOH HOH . M 6 HOH B 96 696 227 HOH HOH . M 6 HOH B 97 697 228 HOH HOH . M 6 HOH B 98 698 229 HOH HOH . M 6 HOH B 99 699 230 HOH HOH . M 6 HOH B 100 700 231 HOH HOH . M 6 HOH B 101 701 232 HOH HOH . M 6 HOH B 102 702 233 HOH HOH . M 6 HOH B 103 703 234 HOH HOH . M 6 HOH B 104 704 235 HOH HOH . M 6 HOH B 105 705 236 HOH HOH . M 6 HOH B 106 706 237 HOH HOH . M 6 HOH B 107 707 238 HOH HOH . M 6 HOH B 108 708 239 HOH HOH . M 6 HOH B 109 709 240 HOH HOH . M 6 HOH B 110 710 242 HOH HOH . M 6 HOH B 111 711 243 HOH HOH . M 6 HOH B 112 712 244 HOH HOH . M 6 HOH B 113 713 245 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 EPE . . . H 5 82.158 -18.148 -32.776 1 46.29 ? N1 EPE 506 A 1 HETATM 2 C C2 EPE . . . H 5 83.39 -18.539 -32.081 1 50.32 ? C2 EPE 506 A 1 HETATM 3 C C3 EPE . . . H 5 84.516 -17.709 -32.676 1 50.79 ? C3 EPE 506 A 1 HETATM 4 N N4 EPE . . . H 5 84.234 -16.293 -32.553 1 49.03 ? N4 EPE 506 A 1 HETATM 5 C C5 EPE . . . H 5 82.876 -15.799 -32.74 1 44.04 ? C5 EPE 506 A 1 HETATM 6 C C6 EPE . . . H 5 81.779 -16.792 -32.355 1 45.64 ? C6 EPE 506 A 1 HETATM 7 C C7 EPE . . . H 5 85.366 -15.381 -32.504 1 50.82 ? C7 EPE 506 A 1 HETATM 8 C C8 EPE . . . H 5 85.358 -14.301 -33.579 1 47.28 ? C8 EPE 506 A 1 HETATM 9 O O8 EPE . . . H 5 84.539 -13.229 -33.159 1 47.47 ? O8 EPE 506 A 1 HETATM 10 C C9 EPE . . . H 5 81.106 -19.154 -32.549 1 40.8 ? C9 EPE 506 A 1 HETATM 11 C C10 EPE . . . H 5 79.749 -18.566 -32.174 1 38.44 ? C10 EPE 506 A 1 HETATM 12 S S EPE . . . H 5 78.449 -19.832 -32.313 1 41.26 ? S EPE 506 A 1 HETATM 13 O O1S EPE . . . H 5 78.463 -20.394 -33.657 1 39.14 ? O1S EPE 506 A 1 HETATM 14 O O2S EPE . . . H 5 77.153 -19.22 -32.036 1 28.2 ? O2S EPE 506 A 1 HETATM 15 O O3S EPE . . . H 5 78.727 -20.914 -31.375 1 46.2 ? O3S EPE 506 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 33 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 15 #