data_4DSN # _model_server_result.job_id Aj2Wjj32vk8ibPuH10PZyA _model_server_result.datetime_utc '2024-10-15 16:19:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4dsn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":204}' # _entry.id 4DSN # _exptl.entry_id 4DSN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4DSN _cell.length_a 78.638 _cell.length_b 78.638 _cell.length_c 77.353 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4DSN _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 11 A GLY 10 1_555 D MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.532 ? metalc ? metalc2 A OG SER 18 A SER 17 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc3 A OG1 THR 36 A THR 35 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc4 A O ALA 60 A ALA 59 1_555 D MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.506 ? metalc ? metalc5 A O GLY 61 A GLY 60 1_555 D MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.539 ? metalc ? metalc6 A OH TYR 97 A TYR 96 1_555 D MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc7 B O1G GCP . A GCP 201 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc8 B O2B GCP . A GCP 201 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? metalc ? metalc9 C MG MG . A MG 202 1_555 G O HOH . A HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc10 C MG MG . A MG 202 1_555 G O HOH . A HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc11 D MG MG . A MG 203 1_555 G O HOH . A HOH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? metalc ? metalc12 D MG MG . A MG 203 1_555 G O HOH . A HOH 365 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.61 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 4DSN _atom_sites.fract_transf_matrix[1][1] 0.012716 _atom_sites.fract_transf_matrix[1][2] 0.007342 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014684 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012928 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GCP A 1 201 1 GCP GCP . C 3 MG A 1 202 2 MG MG . D 3 MG A 1 203 3 MG MG . E 4 EDO A 1 204 5 EDO EDO . F 4 EDO A 1 205 6 EDO EDO . G 5 HOH A 1 301 1 HOH HOH . G 5 HOH A 2 302 2 HOH HOH . G 5 HOH A 3 303 3 HOH HOH . G 5 HOH A 4 304 4 HOH HOH . G 5 HOH A 5 305 5 HOH HOH . G 5 HOH A 6 306 6 HOH HOH . G 5 HOH A 7 307 7 HOH HOH . G 5 HOH A 8 308 8 HOH HOH . G 5 HOH A 9 309 9 HOH HOH . G 5 HOH A 10 310 10 HOH HOH . G 5 HOH A 11 311 11 HOH HOH . G 5 HOH A 12 312 12 HOH HOH . G 5 HOH A 13 313 13 HOH HOH . G 5 HOH A 14 314 14 HOH HOH . G 5 HOH A 15 315 15 HOH HOH . G 5 HOH A 16 316 16 HOH HOH . G 5 HOH A 17 317 17 HOH HOH . G 5 HOH A 18 318 18 HOH HOH . G 5 HOH A 19 319 19 HOH HOH . G 5 HOH A 20 320 20 HOH HOH . G 5 HOH A 21 321 21 HOH HOH . G 5 HOH A 22 322 22 HOH HOH . G 5 HOH A 23 323 23 HOH HOH . G 5 HOH A 24 324 24 HOH HOH . G 5 HOH A 25 325 25 HOH HOH . G 5 HOH A 26 326 26 HOH HOH . G 5 HOH A 27 327 27 HOH HOH . G 5 HOH A 28 328 28 HOH HOH . G 5 HOH A 29 329 29 HOH HOH . G 5 HOH A 30 330 30 HOH HOH . G 5 HOH A 31 331 31 HOH HOH . G 5 HOH A 32 332 32 HOH HOH . G 5 HOH A 33 333 33 HOH HOH . G 5 HOH A 34 334 34 HOH HOH . G 5 HOH A 35 335 35 HOH HOH . G 5 HOH A 36 336 36 HOH HOH . G 5 HOH A 37 337 37 HOH HOH . G 5 HOH A 38 338 38 HOH HOH . G 5 HOH A 39 339 39 HOH HOH . G 5 HOH A 40 340 40 HOH HOH . G 5 HOH A 41 341 41 HOH HOH . G 5 HOH A 42 342 42 HOH HOH . G 5 HOH A 43 343 43 HOH HOH . G 5 HOH A 44 344 44 HOH HOH . G 5 HOH A 45 345 45 HOH HOH . G 5 HOH A 46 346 46 HOH HOH . G 5 HOH A 47 347 47 HOH HOH . G 5 HOH A 48 348 48 HOH HOH . G 5 HOH A 49 349 49 HOH HOH . G 5 HOH A 50 350 50 HOH HOH . G 5 HOH A 51 351 52 HOH HOH . G 5 HOH A 52 352 53 HOH HOH . G 5 HOH A 53 353 54 HOH HOH . G 5 HOH A 54 354 55 HOH HOH . G 5 HOH A 55 355 56 HOH HOH . G 5 HOH A 56 356 57 HOH HOH . G 5 HOH A 57 357 58 HOH HOH . G 5 HOH A 58 358 59 HOH HOH . G 5 HOH A 59 359 60 HOH HOH . G 5 HOH A 60 360 61 HOH HOH . G 5 HOH A 61 361 62 HOH HOH . G 5 HOH A 62 362 63 HOH HOH . G 5 HOH A 63 363 64 HOH HOH . G 5 HOH A 64 364 65 HOH HOH . G 5 HOH A 65 365 66 HOH HOH . G 5 HOH A 66 366 67 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 4 6.782 26.533 -1.431 1 104.6 ? C1 EDO 204 A 1 HETATM 2 O O1 EDO . . . E 4 6.56 25.129 -1.608 1 103.15 ? O1 EDO 204 A 1 HETATM 3 C C2 EDO . . . E 4 8.237 26.775 -1.046 1 102.3 ? C2 EDO 204 A 1 HETATM 4 O O2 EDO . . . E 4 8.548 26.013 0.125 1 100.14 ? O2 EDO 204 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #