data_4DSO
#
_model_server_result.job_id            lEKtH_eVMgnx3Ms4jMARTQ 
_model_server_result.datetime_utc      '2024-11-28 15:09:39' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4dso 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":203}' 
#
_entry.id    4DSO 
#
_exptl.entry_id    4DSO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              120.152 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            BENZAMIDINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4DSO 
_cell.length_a            79.374 
_cell.length_b            79.374 
_cell.length_c            77.749 
_cell.Z_PDB               9 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4DSO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        146 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG SER 18 A SER 17 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.956 ? 
metalc ? metalc2 A OG1 THR 36 A THR 35 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? 
metalc ? metalc3 B O3G GSP . A GSP 201 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.845 ? 
metalc ? metalc4 B O2B GSP . A GSP 201 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? 
metalc ? metalc5 C MG MG . A MG 202 1_555 F O HOH . A HOH 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
metalc ? metalc6 C MG MG . A MG 202 1_555 F O HOH . A HOH 366 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? 
#
_chem_comp.formula           'C7 H8 N2' 
_chem_comp.formula_weight    120.152 
_chem_comp.id                BEN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              BENZAMIDINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 BEN doub 70 n y 
C1 C6 BEN sing 71 n y 
C1 C BEN sing 72 n n 
C2 C3 BEN sing 73 n y 
C2 H2 BEN sing 74 n n 
C3 C4 BEN doub 75 n y 
C3 H3 BEN sing 76 n n 
C4 C5 BEN sing 77 n y 
C4 H4 BEN sing 78 n n 
C5 C6 BEN doub 79 n y 
C5 H5 BEN sing 80 n n 
C6 H6 BEN sing 81 n n 
C N1 BEN doub 82 e n 
C N2 BEN sing 83 n n 
N1 HN1 BEN sing 84 n n 
N2 HN21 BEN sing 85 n n 
N2 HN22 BEN sing 86 n n 
#
_atom_sites.entry_id                     4DSO 
_atom_sites.fract_transf_matrix[1][1]    0.012599 
_atom_sites.fract_transf_matrix[1][2]    0.007274 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014548 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012862 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GSP A 1 201 1 GSP GSP . 
C 3 MG A 1 202 2 MG MG . 
D 4 BEN A 1 203 3 BEN BEN . 
E 5 GOL A 1 204 4 GOL GOL . 
F 6 HOH A 1 301 1 HOH HOH . 
F 6 HOH A 2 302 2 HOH HOH . 
F 6 HOH A 3 303 3 HOH HOH . 
F 6 HOH A 4 304 4 HOH HOH . 
F 6 HOH A 5 305 5 HOH HOH . 
F 6 HOH A 6 306 6 HOH HOH . 
F 6 HOH A 7 307 7 HOH HOH . 
F 6 HOH A 8 308 8 HOH HOH . 
F 6 HOH A 9 309 9 HOH HOH . 
F 6 HOH A 10 310 10 HOH HOH . 
F 6 HOH A 11 311 11 HOH HOH . 
F 6 HOH A 12 312 12 HOH HOH . 
F 6 HOH A 13 313 13 HOH HOH . 
F 6 HOH A 14 314 14 HOH HOH . 
F 6 HOH A 15 315 15 HOH HOH . 
F 6 HOH A 16 316 16 HOH HOH . 
F 6 HOH A 17 317 17 HOH HOH . 
F 6 HOH A 18 318 18 HOH HOH . 
F 6 HOH A 19 319 19 HOH HOH . 
F 6 HOH A 20 320 20 HOH HOH . 
F 6 HOH A 21 321 21 HOH HOH . 
F 6 HOH A 22 322 22 HOH HOH . 
F 6 HOH A 23 323 23 HOH HOH . 
F 6 HOH A 24 324 24 HOH HOH . 
F 6 HOH A 25 325 25 HOH HOH . 
F 6 HOH A 26 326 26 HOH HOH . 
F 6 HOH A 27 327 27 HOH HOH . 
F 6 HOH A 28 328 28 HOH HOH . 
F 6 HOH A 29 329 29 HOH HOH . 
F 6 HOH A 30 330 30 HOH HOH . 
F 6 HOH A 31 331 31 HOH HOH . 
F 6 HOH A 32 332 32 HOH HOH . 
F 6 HOH A 33 333 33 HOH HOH . 
F 6 HOH A 34 334 34 HOH HOH . 
F 6 HOH A 35 335 35 HOH HOH . 
F 6 HOH A 36 336 36 HOH HOH . 
F 6 HOH A 37 337 37 HOH HOH . 
F 6 HOH A 38 338 38 HOH HOH . 
F 6 HOH A 39 339 39 HOH HOH . 
F 6 HOH A 40 340 40 HOH HOH . 
F 6 HOH A 41 341 41 HOH HOH . 
F 6 HOH A 42 342 42 HOH HOH . 
F 6 HOH A 43 343 43 HOH HOH . 
F 6 HOH A 44 344 44 HOH HOH . 
F 6 HOH A 45 345 45 HOH HOH . 
F 6 HOH A 46 346 46 HOH HOH . 
F 6 HOH A 47 347 47 HOH HOH . 
F 6 HOH A 48 348 48 HOH HOH . 
F 6 HOH A 49 349 49 HOH HOH . 
F 6 HOH A 50 350 50 HOH HOH . 
F 6 HOH A 51 351 51 HOH HOH . 
F 6 HOH A 52 352 52 HOH HOH . 
F 6 HOH A 53 353 53 HOH HOH . 
F 6 HOH A 54 354 54 HOH HOH . 
F 6 HOH A 55 355 55 HOH HOH . 
F 6 HOH A 56 356 56 HOH HOH . 
F 6 HOH A 57 357 57 HOH HOH . 
F 6 HOH A 58 358 58 HOH HOH . 
F 6 HOH A 59 359 59 HOH HOH . 
F 6 HOH A 60 360 60 HOH HOH . 
F 6 HOH A 61 361 61 HOH HOH . 
F 6 HOH A 62 362 62 HOH HOH . 
F 6 HOH A 63 363 63 HOH HOH . 
F 6 HOH A 64 364 64 HOH HOH . 
F 6 HOH A 65 365 65 HOH HOH . 
F 6 HOH A 66 366 66 HOH HOH . 
F 6 HOH A 67 367 67 HOH HOH . 
F 6 HOH A 68 368 68 HOH HOH . 
F 6 HOH A 69 369 69 HOH HOH . 
F 6 HOH A 70 370 70 HOH HOH . 
F 6 HOH A 71 371 71 HOH HOH . 
F 6 HOH A 72 372 72 HOH HOH . 
F 6 HOH A 73 373 73 HOH HOH . 
F 6 HOH A 74 374 74 HOH HOH . 
F 6 HOH A 75 375 75 HOH HOH . 
F 6 HOH A 76 376 76 HOH HOH . 
F 6 HOH A 77 377 77 HOH HOH . 
F 6 HOH A 78 378 78 HOH HOH . 
F 6 HOH A 79 379 79 HOH HOH . 
F 6 HOH A 80 380 80 HOH HOH . 
F 6 HOH A 81 381 81 HOH HOH . 
F 6 HOH A 82 382 82 HOH HOH . 
F 6 HOH A 83 383 83 HOH HOH . 
F 6 HOH A 84 384 84 HOH HOH . 
F 6 HOH A 85 385 85 HOH HOH . 
F 6 HOH A 86 386 86 HOH HOH . 
F 6 HOH A 87 387 87 HOH HOH . 
F 6 HOH A 88 388 88 HOH HOH . 
F 6 HOH A 89 389 89 HOH HOH . 
F 6 HOH A 90 390 90 HOH HOH . 
F 6 HOH A 91 391 91 HOH HOH . 
F 6 HOH A 92 392 92 HOH HOH . 
F 6 HOH A 93 393 93 HOH HOH . 
F 6 HOH A 94 394 94 HOH HOH . 
F 6 HOH A 95 395 95 HOH HOH . 
F 6 HOH A 96 396 96 HOH HOH . 
F 6 HOH A 97 397 97 HOH HOH . 
F 6 HOH A 98 398 98 HOH HOH . 
F 6 HOH A 99 399 99 HOH HOH . 
F 6 HOH A 100 400 100 HOH HOH . 
F 6 HOH A 101 401 101 HOH HOH . 
F 6 HOH A 102 402 102 HOH HOH . 
F 6 HOH A 103 403 103 HOH HOH . 
F 6 HOH A 104 404 104 HOH HOH . 
F 6 HOH A 105 405 105 HOH HOH . 
F 6 HOH A 106 406 106 HOH HOH . 
F 6 HOH A 107 407 107 HOH HOH . 
F 6 HOH A 108 408 108 HOH HOH . 
F 6 HOH A 109 409 109 HOH HOH . 
F 6 HOH A 110 410 110 HOH HOH . 
F 6 HOH A 111 411 111 HOH HOH . 
F 6 HOH A 112 412 112 HOH HOH . 
F 6 HOH A 113 413 113 HOH HOH . 
F 6 HOH A 114 414 114 HOH HOH . 
F 6 HOH A 115 415 115 HOH HOH . 
F 6 HOH A 116 416 116 HOH HOH . 
F 6 HOH A 117 417 117 HOH HOH . 
F 6 HOH A 118 418 118 HOH HOH . 
F 6 HOH A 119 419 119 HOH HOH . 
F 6 HOH A 120 420 120 HOH HOH . 
F 6 HOH A 121 421 121 HOH HOH . 
F 6 HOH A 122 422 122 HOH HOH . 
F 6 HOH A 123 423 123 HOH HOH . 
F 6 HOH A 124 424 124 HOH HOH . 
F 6 HOH A 125 425 125 HOH HOH . 
F 6 HOH A 126 426 126 HOH HOH . 
F 6 HOH A 127 427 127 HOH HOH . 
F 6 HOH A 128 428 128 HOH HOH . 
F 6 HOH A 129 429 129 HOH HOH . 
F 6 HOH A 130 430 130 HOH HOH . 
F 6 HOH A 131 431 131 HOH HOH . 
F 6 HOH A 132 432 132 HOH HOH . 
F 6 HOH A 133 433 133 HOH HOH . 
F 6 HOH A 134 434 134 HOH HOH . 
F 6 HOH A 135 435 135 HOH HOH . 
F 6 HOH A 136 436 136 HOH HOH . 
F 6 HOH A 137 437 137 HOH HOH . 
F 6 HOH A 138 438 138 HOH HOH . 
F 6 HOH A 139 439 139 HOH HOH . 
F 6 HOH A 140 440 140 HOH HOH . 
F 6 HOH A 141 441 141 HOH HOH . 
F 6 HOH A 142 442 142 HOH HOH . 
F 6 HOH A 143 443 143 HOH HOH . 
F 6 HOH A 144 444 144 HOH HOH . 
F 6 HOH A 145 445 145 HOH HOH . 
F 6 HOH A 146 446 146 HOH HOH . 
F 6 HOH A 147 447 147 HOH HOH . 
F 6 HOH A 148 448 148 HOH HOH . 
F 6 HOH A 149 449 149 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 BEN . . . D 4 24.736 13.267 11.364 1 42.42 ? C1 BEN 203 A 1 
HETATM 2 C C2 BEN . . . D 4 23.623 14.079 11.625 1 43.31 ? C2 BEN 203 A 1 
HETATM 3 C C3 BEN . . . D 4 22.881 14.639 10.578 1 40.22 ? C3 BEN 203 A 1 
HETATM 4 C C4 BEN . . . D 4 23.24 14.385 9.253 1 38.87 ? C4 BEN 203 A 1 
HETATM 5 C C5 BEN . . . D 4 24.332 13.581 8.982 1 38 ? C5 BEN 203 A 1 
HETATM 6 C C6 BEN . . . D 4 25.071 13.032 10.032 1 40.21 ? C6 BEN 203 A 1 
HETATM 7 C C BEN . . . D 4 25.555 12.683 12.498 1 44.79 ? C BEN 203 A 1 
HETATM 8 N N1 BEN . . . D 4 25.092 12.538 13.661 1 47.04 ? N1 BEN 203 A 1 
HETATM 9 N N2 BEN . . . D 4 26.83 12.333 12.322 1 44.42 ? N2 BEN 203 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           359 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           9 
#