data_4DST # _model_server_result.job_id 8KOqLJpfuXOC80TViITO3A _model_server_result.datetime_utc '2024-11-27 19:09:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4dst # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":208}' # _entry.id 4DST # _exptl.entry_id 4DST _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4DST _cell.length_a 78.923 _cell.length_b 78.923 _cell.length_c 78.631 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4DST _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 11 A GLY 10 1_555 I MG MG . A MG 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.623 ? metalc ? metalc2 A OG SER 18 A SER 17 1_555 D MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc3 A OG1 THR 36 A THR 35 1_555 D MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? metalc ? metalc4 A O ALA 60 A ALA 59 1_555 I MG MG . A MG 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.668 ? metalc ? metalc5 A O GLY 61 A GLY 60 1_555 I MG MG . A MG 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.604 ? metalc ? metalc6 A OH TYR 97 A TYR 96 1_555 I MG MG . A MG 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? metalc ? metalc7 C O2B GCP . A GCP 202 1_555 D MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc8 C O1G GCP . A GCP 202 1_555 D MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? metalc ? metalc9 D MG MG . A MG 203 1_555 J O HOH . A HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc10 D MG MG . A MG 203 1_555 J O HOH . A HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc11 I MG MG . A MG 208 1_555 J O HOH . A HOH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? metalc ? metalc12 I MG MG . A MG 208 1_555 J O HOH . A HOH 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.535 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4DST _atom_sites.fract_transf_matrix[1][1] 0.012671 _atom_sites.fract_transf_matrix[1][2] 0.007315 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014631 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012718 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 9LI A 1 201 1 9LI 9LI . C 3 GCP A 1 202 1 GCP GCP . D 4 MG A 1 203 1 MG MG . E 5 GOL A 1 204 5 GOL GOL . F 6 EDO A 1 205 6 EDO EDO . G 7 DMS A 1 206 7 DMS DMS . H 8 ACT A 1 207 8 ACT ACT . I 4 MG A 1 208 9 MG MG . J 9 HOH A 1 301 1 HOH HOH . J 9 HOH A 2 302 2 HOH HOH . J 9 HOH A 3 303 3 HOH HOH . J 9 HOH A 4 304 4 HOH HOH . J 9 HOH A 5 305 5 HOH HOH . J 9 HOH A 6 306 6 HOH HOH . J 9 HOH A 7 307 7 HOH HOH . J 9 HOH A 8 308 8 HOH HOH . J 9 HOH A 9 309 9 HOH HOH . J 9 HOH A 10 310 10 HOH HOH . J 9 HOH A 11 311 11 HOH HOH . J 9 HOH A 12 312 12 HOH HOH . J 9 HOH A 13 313 14 HOH HOH . J 9 HOH A 14 314 15 HOH HOH . J 9 HOH A 15 315 16 HOH HOH . J 9 HOH A 16 316 17 HOH HOH . J 9 HOH A 17 317 18 HOH HOH . J 9 HOH A 18 318 19 HOH HOH . J 9 HOH A 19 319 20 HOH HOH . J 9 HOH A 20 320 21 HOH HOH . J 9 HOH A 21 321 22 HOH HOH . J 9 HOH A 22 322 23 HOH HOH . J 9 HOH A 23 323 24 HOH HOH . J 9 HOH A 24 324 25 HOH HOH . J 9 HOH A 25 325 26 HOH HOH . J 9 HOH A 26 326 27 HOH HOH . J 9 HOH A 27 327 28 HOH HOH . J 9 HOH A 28 328 29 HOH HOH . J 9 HOH A 29 329 30 HOH HOH . J 9 HOH A 30 330 31 HOH HOH . J 9 HOH A 31 331 32 HOH HOH . J 9 HOH A 32 332 33 HOH HOH . J 9 HOH A 33 333 34 HOH HOH . J 9 HOH A 34 334 35 HOH HOH . J 9 HOH A 35 335 36 HOH HOH . J 9 HOH A 36 336 37 HOH HOH . J 9 HOH A 37 337 38 HOH HOH . J 9 HOH A 38 338 39 HOH HOH . J 9 HOH A 39 339 40 HOH HOH . J 9 HOH A 40 340 41 HOH HOH . J 9 HOH A 41 341 42 HOH HOH . J 9 HOH A 42 342 43 HOH HOH . J 9 HOH A 43 343 44 HOH HOH . J 9 HOH A 44 344 45 HOH HOH . J 9 HOH A 45 345 46 HOH HOH . J 9 HOH A 46 346 47 HOH HOH . J 9 HOH A 47 347 48 HOH HOH . J 9 HOH A 48 348 49 HOH HOH . J 9 HOH A 49 349 50 HOH HOH . J 9 HOH A 50 350 51 HOH HOH . J 9 HOH A 51 351 52 HOH HOH . J 9 HOH A 52 352 53 HOH HOH . J 9 HOH A 53 353 54 HOH HOH . J 9 HOH A 54 354 55 HOH HOH . J 9 HOH A 55 355 56 HOH HOH . J 9 HOH A 56 356 57 HOH HOH . J 9 HOH A 57 357 58 HOH HOH . J 9 HOH A 58 358 59 HOH HOH . J 9 HOH A 59 359 60 HOH HOH . J 9 HOH A 60 360 61 HOH HOH . J 9 HOH A 61 361 62 HOH HOH . J 9 HOH A 62 362 63 HOH HOH . J 9 HOH A 63 363 64 HOH HOH . J 9 HOH A 64 364 65 HOH HOH . J 9 HOH A 65 365 66 HOH HOH . J 9 HOH A 66 366 68 HOH HOH . J 9 HOH A 67 367 69 HOH HOH . J 9 HOH A 68 368 70 HOH HOH . J 9 HOH A 69 369 73 HOH HOH . J 9 HOH A 70 370 75 HOH HOH . J 9 HOH A 71 371 76 HOH HOH . J 9 HOH A 72 372 77 HOH HOH . J 9 HOH A 73 373 78 HOH HOH . J 9 HOH A 74 374 79 HOH HOH . J 9 HOH A 75 375 80 HOH HOH . J 9 HOH A 76 376 82 HOH HOH . J 9 HOH A 77 377 83 HOH HOH . J 9 HOH A 78 378 84 HOH HOH . J 9 HOH A 79 379 85 HOH HOH . J 9 HOH A 80 380 86 HOH HOH . J 9 HOH A 81 381 87 HOH HOH . J 9 HOH A 82 382 88 HOH HOH . J 9 HOH A 83 383 89 HOH HOH . J 9 HOH A 84 384 90 HOH HOH . J 9 HOH A 85 385 91 HOH HOH . J 9 HOH A 86 386 92 HOH HOH . J 9 HOH A 87 387 93 HOH HOH . J 9 HOH A 88 388 94 HOH HOH . J 9 HOH A 89 389 95 HOH HOH . J 9 HOH A 90 390 96 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id I _atom_site.label_entity_id 4 _atom_site.Cartn_x 11.818 _atom_site.Cartn_y 7.424 _atom_site.Cartn_z 7.75 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 37.97 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 208 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #